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Paolone A, Bazzan M, Favaro G, Borondics F, Nemeth G, Capitani F, Swaraj S, Belkhou R, Flammini R, Teillon J, Michel C, Hofman D, Granata M. Argon release, crystallization, morphological and optical changes of ion-beam sputtered Ta 2O 5 thin films during thermal treatments. Heliyon 2025; 11:e42009. [PMID: 39911425 PMCID: PMC11795037 DOI: 10.1016/j.heliyon.2025.e42009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2024] [Revised: 01/14/2025] [Accepted: 01/15/2025] [Indexed: 02/07/2025] Open
Abstract
Mass spectrometry measurements at high temperatures on amorphous Ta2O5, produced by Ion Beam Sputtering (IBS) and widely used for the high reflective coatings of the mirrors of gravitational-wave detectors, detect a release of argon around 1000 K. This process is thermally activated and the corresponding activation energy is 410 ± 60 kJ/mol. X-Ray Diffraction (XRD) measurements indicate that in the same range of temperature the crystallization of tantala takes place. Atomic Force Microscopy (AFM) experiments detect a reduction of the surface roughness in the crystalline phase; domains with typical dimensions of the order of few microns appear in the crystal. While the infrared reflectance and absorption properties measured by scanning near-field optical microscopy (SNOM) are extremely homogeneous in the amorphous state, they become dependent on the crystal domain at high temperatures. Moreover, an absorption band around 960 cm-1 appears only in samples heated in vacuum and not in specimen thermally treated in air. Photoemission electron microscopy (PEEM) experiments support the idea that this infrared absorption band is due to the formation of non-homogeneous and non-stoichiometric oxygen domains.
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Affiliation(s)
- A. Paolone
- Istituto dei Sistemi Complessi, Consiglio Nazionale delle Ricerche, Piazzale A. Moro 5, 00185, Roma, Italy
- Sezione di Roma, Istituto Nazionale di Fisica Nucleare, Piazzale A. Moro 5, 00185, Roma, Italy
| | - M. Bazzan
- Dipartimento di Fisica e Astronomia, Università di Padova, Via F. Marzolo 8, 35131, Padova, Italy
- Sezione di Padova, Istituto Nazionale di Fisica Nucleare, Via F. Marzolo 8, 35131, Padova, Italy
| | - G. Favaro
- Dipartimento di Fisica e Astronomia, Università di Padova, Via F. Marzolo 8, 35131, Padova, Italy
- Sezione di Padova, Istituto Nazionale di Fisica Nucleare, Via F. Marzolo 8, 35131, Padova, Italy
| | - F. Borondics
- SOLEIL Synchrotron, L'Orme des Merisiers, RD 128, 91190, Saint Aubin, France
| | - G. Nemeth
- SOLEIL Synchrotron, L'Orme des Merisiers, RD 128, 91190, Saint Aubin, France
| | - F. Capitani
- SOLEIL Synchrotron, L'Orme des Merisiers, RD 128, 91190, Saint Aubin, France
| | - S. Swaraj
- SOLEIL Synchrotron, L'Orme des Merisiers, RD 128, 91190, Saint Aubin, France
| | - R. Belkhou
- SOLEIL Synchrotron, L'Orme des Merisiers, RD 128, 91190, Saint Aubin, France
| | - R. Flammini
- Istituto di Struttura della Materia, Consiglio Nazionale delle Ricerche, Area di Ricerca di Tor Vergata, via del Fosso del Cavaliere 100, 00133, Roma, Italy
| | - J. Teillon
- Laboratoire des Matériaux Avancés – IP2I, CNRS, Université de Lyon, 69622, Villeurbanne, France
| | - C. Michel
- Laboratoire des Matériaux Avancés – IP2I, CNRS, Université de Lyon, 69622, Villeurbanne, France
| | - D. Hofman
- Laboratoire des Matériaux Avancés – IP2I, CNRS, Université de Lyon, 69622, Villeurbanne, France
| | - M. Granata
- Laboratoire des Matériaux Avancés – IP2I, CNRS, Université de Lyon, 69622, Villeurbanne, France
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2
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Jun H, Tondelier D, Geffroy B, Florea I, Bouree JE, Lopez-Varo P, Schulz P, Bonnassieux Y, Swaraj S. Electrochemical and Spectro-Microscopic Analyses of Charge Accumulation and Ion Migration in Dry Processed Perovskite Solar Cells under Electrical Biasing. J Phys Chem Lett 2025; 16:835-847. [PMID: 39817869 DOI: 10.1021/acs.jpclett.4c02884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/18/2025]
Abstract
We study the influence of electrical biasing on the modification of the chemical composition and electrical performance of perovskite solar cells (PSCs) by coupling electrochemical impedance spectroscopy (EIS) and scanning transmission X-ray microscopy (STXM) techniques. EIS reveals the formation of charge accumulation at the interfaces and changes in the resistive and capacitive properties. STXM study on PSCs after applying a strong electric field for a long biasing time indicates the breakdown of methylammonium (MA+) cation, promoting iodide ions to migrate and create defects at the interface. This complementary EIS and STXM study allows the suggestion of a degradation mechanism that includes the migration of iodide ions that leads to interface defects and subsequent degradation of solar cell performance. In addition, we study the evolution of the performance of PSCs under air. We observe an increased hysteresis index on current-voltage curves and fill factor reduction of the perovskite solar cells with aging in air. EIS measurements show the formation of a capacitive layer resulting from the accumulation of iodide ions through modification of the mobile ion concentration and ion mobility.
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Affiliation(s)
- Haeyeon Jun
- Synchrotron SOLEIL, L'Orme des Merisiers, Départementale 128, 91190 Saint-Aubin, France
- LPICM, CNRS, École Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Denis Tondelier
- LPICM, CNRS, École Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Bernard Geffroy
- LPICM, CNRS, École Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
- Université Paris-Saclay, CEA, CNRS, NIMBE, LICSEN, 91191 Gif-sur-Yvette, France
| | - Ileana Florea
- Université Côte d'Azur, CNRS, CRHEA, rue B. Grégory, 06560 Valbonne, France
| | - Jean-Eric Bouree
- LPICM, CNRS, École Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Pilar Lopez-Varo
- IPVF, UMR 9006, 18, Boulevard Thomas Gobert, 91120 Palaiseau, France
| | - Philip Schulz
- LPICM, CNRS, École Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
- IPVF, UMR 9006, 18, Boulevard Thomas Gobert, 91120 Palaiseau, France
| | - Yvan Bonnassieux
- LPICM, CNRS, École Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Sufal Swaraj
- Synchrotron SOLEIL, L'Orme des Merisiers, Départementale 128, 91190 Saint-Aubin, France
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3
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Dickson LE, Cranston RR, Xu H, Swaraj S, Seferos DS, Lessard BH. Blade Coating Poly(3-hexylthiophene): The Importance of Molecular Weight on Thin-Film Microstructures. ACS APPLIED MATERIALS & INTERFACES 2023; 15:55109-55118. [PMID: 37963182 DOI: 10.1021/acsami.3c12335] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
Abstract
Poly(3-hexylthiophene) is one of the most prevalent and promising conjugated polymers for use in organic electronics. However, the deposition of this material in thin films is highly dependent on the process, such as blade coating versus spin coating and material properties such as molecular weight. Typically, large polymer dispersity makes it difficult to isolate the effect of molecular weight without considering a distribution. In this study, we characterize oligothiophenes of exactly 8, 11, and 14 repeat units, which were deposited into thin films by varying blade coating conditions and postdeposition annealing. From synchrotron-based grazing incidence wide-angle X-ray scattering (GIWAXS), scanning transmission X-ray microscopy (STXM) and near-edge X-ray absorption fine structure spectroscopy (NEXAFS), Raman microscopy, optical microscopy, and X-ray diffraction (XRD), it was suggested that higher molecular weight polymers exhibit a fast-forming crystalline polymorph (form-1) while low molecular weight polymers exhibit a slow forming polymorph (form-2) with large domain boundaries. As molecular weight is gradually increased, the polymorph formed transitions from form-1 and form-2, where 11 repeat unit oligomers display both polymorphs. We also found that processing conditions can increase the formation of the form-2 polymorph. We also report improved organic thin film transistor (OTFT) performance when form-1 is present. Overall, oligothiophene polymorph formation is highly dependent on the molecular weight and processing conditions, providing critical insight into the importance of polymer weight control in the development of thin-film electronics based on conjugated polymers.
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Affiliation(s)
- Laura E Dickson
- Department of Chemical and Biological Engineering, University of Ottawa, 161 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
| | - Rosemary R Cranston
- Department of Chemical and Biological Engineering, University of Ottawa, 161 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
| | - Hao Xu
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
| | - Sufal Swaraj
- L'Orme des Merisiers, Départementale 128, SOLEIL Synchrotron, Saint-Aubin 91190, France
| | - Dwight S Seferos
- Department of Chemistry, University of Toronto, 80 St. George Street, Toronto, Ontario M5S 3H6, Canada
- Department of Chemical Engineering & Applied Chemistry, University of Toronto, 200 College Street, Toronto, Ontario M5S 3E5, Canada
| | - Benoît H Lessard
- Department of Chemical and Biological Engineering, University of Ottawa, 161 Louis Pasteur, Ottawa, Ontario K1N 6N5, Canada
- School of Electrical Engineering and Computer Science, University of Ottawa, 800 King Edward Ave., Ottawa, Ontario K1N 6N5, Canada
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4
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Vijayakumar J, Yuan H, Mille N, Stanescu S, Swaraj S, Favre-Nicolin V, Najafi E, Hitchcock AP, Belkhou R. Soft X-ray spectro-ptychography of boron nitride nanobamboos, carbon nanotubes and permalloy nanorods. JOURNAL OF SYNCHROTRON RADIATION 2023; 30:746-757. [PMID: 37145139 PMCID: PMC10325009 DOI: 10.1107/s1600577523003399] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/23/2022] [Accepted: 04/13/2023] [Indexed: 05/06/2023]
Abstract
Spectro-ptychography offers improved spatial resolution and additional phase spectral information relative to that provided by scanning transmission X-ray microscopes. However, carrying out ptychography at the lower range of soft X-ray energies (e.g. below 200 eV to 600 eV) on samples with weakly scattering signals can be challenging. Here, results of soft X-ray spectro-ptychography at energies as low as 180 eV are presented, and its capabilities are illustrated with results from permalloy nanorods (Fe 2p), carbon nanotubes (C 1s) and boron nitride bamboo nanostructures (B 1s, N 1s). The optimization of low-energy X-ray spectro-ptychography is described and important challenges associated with measurement approaches, reconstruction algorithms and their effects on the reconstructed images are discussed. A method for evaluating the increase in radiation dose when using overlapping sampling is presented.
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Affiliation(s)
- Jaianth Vijayakumar
- Synchrotron SOLEIL, L’Orme des Merisiers, BP 48, Saint-Aubin, 91192 Gif-sur-Yvette Cedex, France
| | - Hao Yuan
- Department of Electrical and Computer Engineering, University of Victoria, Victoria, BC, Canada V8W 2Y2
- Department of Chemistry and Chemical Biology, McMaster University, Hamilton, Canada L8S 4M1
| | - Nicolas Mille
- Synchrotron SOLEIL, L’Orme des Merisiers, BP 48, Saint-Aubin, 91192 Gif-sur-Yvette Cedex, France
| | - Stefan Stanescu
- Synchrotron SOLEIL, L’Orme des Merisiers, BP 48, Saint-Aubin, 91192 Gif-sur-Yvette Cedex, France
| | - Sufal Swaraj
- Synchrotron SOLEIL, L’Orme des Merisiers, BP 48, Saint-Aubin, 91192 Gif-sur-Yvette Cedex, France
| | - Vincent Favre-Nicolin
- ESRF – The European Synchrotron, 71 Avenue des Martyrs, 38000 Grenoble, France
- Université Grenoble Alpes, Grenoble, France
| | | | - Adam P. Hitchcock
- Department of Electrical and Computer Engineering, University of Victoria, Victoria, BC, Canada V8W 2Y2
| | - Rachid Belkhou
- Synchrotron SOLEIL, L’Orme des Merisiers, BP 48, Saint-Aubin, 91192 Gif-sur-Yvette Cedex, France
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5
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Truong C, Bernard S, Le Pape P, Morin G, Baya C, Merrot P, Gorlas A, Guyot F. Production of carbon-containing pyrite spherules induced by hyperthermophilic Thermococcales: a biosignature? Front Microbiol 2023; 14:1145781. [PMID: 37303784 PMCID: PMC10248028 DOI: 10.3389/fmicb.2023.1145781] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Accepted: 05/02/2023] [Indexed: 06/13/2023] Open
Abstract
Thermococcales, a major order of hyperthermophilic archaea inhabiting iron- and sulfur-rich anaerobic parts of hydrothermal deep-sea vents, are known to induce the formation of iron phosphates, greigite (Fe3S4) and abundant quantities of pyrite (FeS2), including pyrite spherules. In the present study, we report the characterization of the sulfide and phosphate minerals produced in the presence of Thermococcales using X-ray diffraction, synchrotron-based X ray absorption spectroscopy and scanning and transmission electron microscopies. Mixed valence Fe(II)-Fe(III) phosphates are interpreted as resulting from the activity of Thermococcales controlling phosphorus-iron-sulfur dynamics. The pyrite spherules (absent in abiotic control) consist of an assemblage of ultra-small nanocrystals of a few ten nanometers in size, showing coherently diffracting domain sizes of few nanometers. The production of these spherules occurs via a sulfur redox swing from S0 to S-2 and then to S-1, involving a comproportionation of (-II) and (0) oxidation states of sulfur, as supported by S-XANES data. Importantly, these pyrite spherules sequester biogenic organic compounds in small but detectable quantities, possibly making them good biosignatures to be searched for in extreme environments.
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Affiliation(s)
- Chloé Truong
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Sylvain Bernard
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Pierre Le Pape
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Guillaume Morin
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Camille Baya
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Pauline Merrot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
| | - Aurore Gorlas
- CEA, CNRS, Institute for Integrative Biology of the Cell, Université Paris-Saclay, Gif-sur-Yvette, France
| | - François Guyot
- Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie (IMPMC), MNHN, CNRS, IRD, Sorbonne Université, Paris, France
- Institut Universitaire de France (IUF), Paris, France
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6
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Tong X, Chen Y, Xu Z, Li Y, Xing Z, Mu C, Zhao J, Zhen X, Mao C, Tai R. High-efficiency focusing and imaging by dielectric kinoform zone plate lenses with soft X-rays. JOURNAL OF SYNCHROTRON RADIATION 2023; 30:319-326. [PMID: 36891845 PMCID: PMC10000800 DOI: 10.1107/s1600577522012115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/18/2022] [Accepted: 12/22/2022] [Indexed: 06/18/2023]
Abstract
With fast advances in enhancing the focusing/imaging resolution of Fresnel zone plate lenses toward sub-10 nm, low diffraction efficiency in connection with their rectangular zone shape still remains a big issue in both soft and hard X-ray microscopy. In hard X-ray optics, encouraging progress has recently been reported in our earlier attempts of high focusing efficiency by 3D kinoform shaped metallic zone plates, formed by greyscale electron beam lithography. This paper addresses our efforts towards high focusing/imaging efficiency by developing a novel dielectric kinoform zone plate lens for soft X-rays. The effects of the zone materials and zone shapes on the focusing/imaging quality were first theoretically investigated by a modified thin-grating-approximation method, revealing superior efficiencies of dielectric kinoform zone plates over rectangular ones in metals. Optical characterizations of replicated dielectric kinoform zone plates by greyscale electron beam lithography demonstrate a focusing efficiency of 15.5% with a resolution of 110 nm in the water window of X-rays. Apart from high efficiency, the novel kinoform zone plate lenses developed in this work exhibit significant advantages over conventional zone plates, i.e. simplified process, low cost and no need for a beamstop.
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Affiliation(s)
- Xujie Tong
- Nanolithography and Application Research Group, School of Information Science and Technology, Fudan University, Shanghai 200433, People’s Republic of China
| | - Yifang Chen
- Nanolithography and Application Research Group, School of Information Science and Technology, Fudan University, Shanghai 200433, People’s Republic of China
| | - Zijian Xu
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, People’s Republic of China
| | - Yijie Li
- Nanolithography and Application Research Group, School of Information Science and Technology, Fudan University, Shanghai 200433, People’s Republic of China
| | - Zhenjiang Xing
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, People’s Republic of China
| | - Chengyang Mu
- Nanolithography and Application Research Group, School of Information Science and Technology, Fudan University, Shanghai 200433, People’s Republic of China
| | - Jun Zhao
- Nanolithography and Application Research Group, School of Information Science and Technology, Fudan University, Shanghai 200433, People’s Republic of China
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, People’s Republic of China
| | - Xiangjun Zhen
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, People’s Republic of China
| | - Chengwen Mao
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, People’s Republic of China
| | - Renzhong Tai
- Shanghai Synchrotron Radiation Facility, Shanghai Advanced Research Institute, Chinese Academy of Sciences, Shanghai 201210, People’s Republic of China
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7
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Bonanni V, Gianoncelli A. Soft X-ray Fluorescence and Near-Edge Absorption Microscopy for Investigating Metabolic Features in Biological Systems: A Review. Int J Mol Sci 2023; 24:ijms24043220. [PMID: 36834632 PMCID: PMC9960606 DOI: 10.3390/ijms24043220] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2022] [Revised: 01/13/2023] [Accepted: 02/01/2023] [Indexed: 02/10/2023] Open
Abstract
Scanning transmission X-ray microscopy (STXM) provides the imaging of biological specimens allowing the parallel collection of localized spectroscopic information by X-ray fluorescence (XRF) and/or X-ray Absorption Near Edge Spectroscopy (XANES). The complex metabolic mechanisms which can take place in biological systems can be explored by these techniques by tracing even small quantities of the chemical elements involved in the metabolic pathways. Here, we present a review of the most recent publications in the synchrotrons' scenario where soft X-ray spectro-microscopy has been employed in life science as well as in environmental research.
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8
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Soft X-ray characterization of halide perovskite film by scanning transmission X-ray microscopy. Sci Rep 2022; 12:4520. [PMID: 35296696 PMCID: PMC8927596 DOI: 10.1038/s41598-022-08256-3] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2021] [Accepted: 02/25/2022] [Indexed: 11/10/2022] Open
Abstract
Organic–inorganic metal halide perovskites (MHPs) have recently been receiving a lot of attention due to their newfound application in optoelectronic devices, including perovskite solar cells (PSCs) which have reached power conversion efficiencies as high as 25.5%. However, the fundamental mechanisms in PSCs, including the correlation of degradation with the excellent optoelectrical properties of the perovskite absorbers, are poorly understood. In this paper, we have explored synchrotron-based soft X-ray characterization as an effective technique for the compositional analysis of MHP thin films. Most synchrotron-based studies used for investigating MHPs so far are based on hard X-rays (5–10 keV) which include various absorption edges (Pb L-edge, I L-edge, Br K-edge, etc.) but are not suited for the analysis of the organic component in these materials. In order to be sensitive to a maximum number of elements, we have employed soft X-ray-based scanning transmission X-ray microscopy (STXM) as a spectro-microscopy technique for the characterization of MHPs. We examined its sensitivity to iodine and organic components, aging, or oxidation by-products in MHPs to make sure that our suggested method is suitable for studying MHPs. Furthermore, methylammonium triiodide with different deposition ratios of PbI2 and CH3NH3I (MAI), and different thicknesses, were characterized for chemical inhomogeneity at the nanoscale by STXM. Through these measurements, we demonstrate that STXM is very sensitive to chemical composition and homogeneity in MHPs. Thus, we highlight the utility of STXM for an in-depth analysis of physical and chemical phenomena in PSCs.
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9
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Dindault C, Jun H, Tondelier D, Geffroy B, Bourée JE, Bonnassieux Y, Schulz P, Swaraj S. Metal halide perovskite layers studied by scanning transmission X-ray microscopy. RSC Adv 2022; 12:25570-25577. [PMID: 36199324 PMCID: PMC9453187 DOI: 10.1039/d2ra04438b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2022] [Accepted: 08/08/2022] [Indexed: 11/21/2022] Open
Abstract
We introduced the utility of high resolution soft X-ray STXM (scanning transmission X-ray microscopy) to study biased and unbiased wet processed metal halide perovskite layers of CH3NH3PbI3 (MAPbI3).
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Affiliation(s)
- Chloé Dindault
- Institut Photovoltaique d’Ile de France (SAS), 91120 Palaiseau, France
- LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Haeyeon Jun
- LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
- Synchrotron SOLEIL, L'Orme des Merisiers, Départementale 128, 91190 Saint-Aubin, France
| | - Denis Tondelier
- LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Bernard Geffroy
- LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
- CEA, CNRS, NIMBE, LICSEN, Université Paris-Saclay, 91191 Gif-sur-Yvette, France
| | - Jean-Eric Bourée
- LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Yvan Bonnassieux
- LPICM, CNRS, Ecole Polytechnique, Institut Polytechnique de Paris, Route de Saclay, 91128 Palaiseau, France
| | - Philip Schulz
- CNRS, Institut Photovoltaïque d’Ile de France (IPVF), UMR 9006, 18, Boulevard Thomas Gobert, 91120 Palaiseau, France
| | - Sufal Swaraj
- Synchrotron SOLEIL, L'Orme des Merisiers, Départementale 128, 91190 Saint-Aubin, France
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10
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Fehse M, Iadecola A, Simonelli L, Longo A, Stievano L. The rise of X-ray spectroscopies for unveiling the functional mechanisms in batteries. Phys Chem Chem Phys 2021; 23:23445-23465. [PMID: 34664565 DOI: 10.1039/d1cp03263a] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Abstract
Synchrotron-based techniques have been key tools in the discovery, understanding, and development of battery materials. In this review, some of the most suitable X-ray spectroscopy related techniques employed for addressing diverse scientific cases connected to battery science are highlighted. Furthermore, current shortcomings, intrinsic limitations, and ongoing challenges of individual techniques are pointed out, providing an outlook of future trends that are relevant to the battery research community. In particular, the ongoing development of next generation synchrotrons, machine learning algorithms for data analysis and combined theoretical/experimental approaches will enhance the already powerful assets of these advanced spectroscopic methods.
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Affiliation(s)
| | - Antonella Iadecola
- Rééseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS, Amiens, France
| | | | - Alessandro Longo
- European Synchrotron Radiation Facility, Grenoble, France.,Istituto per lo Studio dei Materiali Nanostrutturati, ISMN-CNR UOS di Palermo, Palermo, Italy
| | - Lorenzo Stievano
- Rééseau sur le Stockage Electrochimique de l'Energie (RS2E), CNRS, Amiens, France.,ICGM, Univ. Montpellier, CNRS, ENSCM, Montpellier, France.
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11
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Phan VTH, Quirico E, Beck P, Le Brech Y, Jovanovic L, Le Guillou C, Bernard S, Bonal L, Carrasco N, Gautier T, Raya J. Infrared spectroscopy quantification of functional carbon groups in kerogens and coals: A calibration procedure. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2021; 259:119853. [PMID: 33971437 DOI: 10.1016/j.saa.2021.119853] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/02/2020] [Revised: 04/06/2021] [Accepted: 04/13/2021] [Indexed: 06/12/2023]
Abstract
The determination of the abundances of the CHx, C = O and aromatic groups in chondritic Insoluble Organic Matter (IOM) and coals by Infrared (IR) spectroscopy is a challenging issue due to insufficient knowledge on the absorption cross-sections and their sensitivity to the molecular environment. Here, we report a calibration approach based on a 13C synthetic model material whose composition was unambiguously determined by Direct-Pulse/Magic Angle Spinning Nuclear Magnetic Resonance (DP/MAS NMR). Ratios of the cross-sections of the CHx, C = O and aromatic groups have been determined, and the method has been applied to IOM samples extracted from four chondrites as Orgueil (CI), Murchison (CM), Tagish Lake (C2-ungrouped) and EET 92042 (CR2), and to a series of coals. The estimate of the aliphatic to aromatic carbon ratio (nCHx/nAro) in IOM samples from Orgueil, Murchison and Tagish Lake chondrites is in good agreement with Single-Pulse/NMR estimates earlier published, and is lower by a factor of 1.3 in the case of the CR chondrite EET 92042 (but the error bars overlap). In contrast, the aliphatic to carbonyl ratio (nCHx/nC=O) is overestimated for the four chondrites. These discrepancies are likely due to the control of the absorption cross-section of the C = O and C = C bonds by the local molecular environment. Regarding coals, the use of published NMR analyses has brought to light that the integrated cross-section ratio ACHx/AAro varies with the vitrinite reflectance over an order of magnitude. Here as well, the local oxygen speciation plays a critical control in AAro, which decreases with increasing the vitrinite reflectance. We provide an analytical law that links ACHx/AAro and vitrinite reflectance, which will allow the determination of nCHx/nAro for any coal sample, provided its vitrinite reflectance is known.
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Affiliation(s)
- Van T H Phan
- Institut de Planétologie et d'Astrophysique de Grenoble (IPAG), Université Grenoble Alpes/CNRS-INSU, UMR 5274, Grenoble F-38041, France.
| | - Eric Quirico
- Institut de Planétologie et d'Astrophysique de Grenoble (IPAG), Université Grenoble Alpes/CNRS-INSU, UMR 5274, Grenoble F-38041, France
| | - Pierre Beck
- Institut de Planétologie et d'Astrophysique de Grenoble (IPAG), Université Grenoble Alpes/CNRS-INSU, UMR 5274, Grenoble F-38041, France
| | - Yann Le Brech
- LRGP, CNRS, Université de Lorraine, 1 rue Grandville, 54000 Nancy, France
| | | | - Corentin Le Guillou
- Unité Matériaux et Transformations, UMET, UMR-CNRS 8207, Université de Lille, France
| | - Sylvain Bernard
- Muséum National d'Histoire Naturelle, Sorbonne Université, CNRS UMR 7590, IRD, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, Paris, France
| | - Lydie Bonal
- Institut de Planétologie et d'Astrophysique de Grenoble (IPAG), Université Grenoble Alpes/CNRS-INSU, UMR 5274, Grenoble F-38041, France
| | | | | | - Jesus Raya
- ICS, CNRS, Université de Strasbourg, BP 296 R8, 670008 Strasbourg, France
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12
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Analysis of Cr(VI) Bioremediation by Citrobacter freundii Using Synchrotron Soft X-ray Scanning Transmission X-ray Microscopy. QUANTUM BEAM SCIENCE 2021. [DOI: 10.3390/qubs5040028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Scanning transmission X-ray microscopy (STXM) was utilized for analysing the bioremediation of Cr(VI) by Citrobacter freundii, a species of gram-negative bacteria. The biosorption and bioreduction processes were analysed by the chemical mapping of cells biosorbed at different concentrations of Cr(VI). STXM spectromicroscopy images were recorded at O K-edge and Cr L-edge. A thorough analysis of the X-ray absorption features corresponding to different oxidation states of Cr in the biosorbed cell indicated the coexistence of Cr(III) and Cr(VI) at higher concentrations. This signifies the presence of partially reduced Cr(VI) in addition to biosorbed Cr(VI). In addition, the Cr(III) signal is intense compared with Cr(VI) at different regions of the cell indicating excess of reduced Cr. Speciation of adsorbed Cr was analysed for the spectral features of biosorbed cell and comparison with Cr standards. Analysis of absorption onset, L3/L2 ratio and absorption fine structure concludes that adsorbed Cr is predominantly present as Cr(III) hydroxide or oxyhydroxide. The evolution of absorption features in the duration of biosorption process was also studied. These time lapse studies depict the gradual decrement in Cr(VI) signal as biosorption proceeds. A strong evidence of interaction of Cr with the cell material was also observed. The obtained results provide insights into the biosorption process and chemical speciation of Cr on the cells.
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13
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Wakabayashi D, Tanaka H, Toyoshima A, Yamashita S, Takeichi Y. Photoelectron shield for the first mirror of a soft X-ray beamline. JOURNAL OF SYNCHROTRON RADIATION 2021; 28:86-90. [PMID: 33399556 DOI: 10.1107/s1600577520013648] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2020] [Accepted: 10/12/2020] [Indexed: 06/12/2023]
Abstract
At a soft X-ray beamline with an undulator source, significant heat generation at the first-mirror chamber and light emission at the viewport were found, which can be explained by photoelectrons from the mirror. The chamber temperature increases up to approximately 50°C over a period of several hours. A photoelectron shield consisting of thin copper plates not only prevents the heat generation and light emission but also improves the pressure of the vacuum chamber, if a voltage of a few tens of V is applied to the shield. The total electron yield of the shield reached as much as 58 mA under high heat-load conditions, indicating the emission of numerous photoelectrons from the first mirror. Heat-balance analyses suggest that approximately 30% or more of the heat load on the first mirror is transferred to the surroundings.
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Affiliation(s)
- Daisuke Wakabayashi
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - Hirokazu Tanaka
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - Akio Toyoshima
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - Shohei Yamashita
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
| | - Yasuo Takeichi
- Institute of Materials Structure Science, High Energy Accelerator Research Organization (KEK), Tsukuba, Ibaraki 305-0801, Japan
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14
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Desjardins K, Medjoubi K, Sacchi M, Popescu H, Gaudemer R, Belkhou R, Stanescu S, Swaraj S, Besson A, Vijayakumar J, Pautard S, Noureddine A, Mercère P, Da Silva P, Orsini F, Menneglier C, Jaouen N. Backside-illuminated scientific CMOS detector for soft X-ray resonant scattering and ptychography. JOURNAL OF SYNCHROTRON RADIATION 2020; 27:1577-1589. [PMID: 33147182 DOI: 10.1107/s160057752001262x] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/03/2020] [Accepted: 09/16/2020] [Indexed: 06/11/2023]
Abstract
The impressive progress in the performance of synchrotron radiation sources is nowadays driven by the so-called `ultimate storage ring' projects which promise an unprecedented improvement in brightness. Progress on the detector side has not always been at the same pace, especially as far as soft X-ray 2D detectors are concerned. While the most commonly used detectors are still based on microchannel plates or CCD technology, recent developments of CMOS (complementary metal oxide semiconductor)-type detectors will play an ever more important role as 2D detectors in the soft X-ray range. This paper describes the capabilities and performance of a camera equipped with a newly commercialized backside-illuminated scientific CMOS (sCMOS-BSI) sensor, integrated in a vacuum environment, for soft X-ray experiments at synchrotron sources. The 4 Mpixel sensor reaches a frame rate of up to 48 frames s-1 while matching the requirements for X-ray experiments in terms of high-intensity linearity (>98%), good spatial homogeneity (<1%), high charge capacity (up to 80 ke-), and low readout noise (down to 2 e- r.m.s.) and dark current (3 e- per second per pixel). Performance evaluations in the soft X-ray range have been carried out at the METROLOGIE beamline of the SOLEIL synchrotron. The quantum efficiency, spatial resolution (24 line-pairs mm-1), energy resolution (<100 eV) and radiation damage versus the X-ray dose (<600 Gy) have been measured in the energy range from 40 to 2000 eV. In order to illustrate the capabilities of this new sCMOS-BSI sensor, several experiments have been performed at the SEXTANTS and HERMES soft X-ray beamlines of the SOLEIL synchrotron: acquisition of a coherent diffraction pattern from a pinhole at 186 eV, a scattering experiment from a nanostructured Co/Cu multilayer at 767 eV and ptychographic imaging in transmission at 706 eV.
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Affiliation(s)
| | - Kadda Medjoubi
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Maurizio Sacchi
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Horia Popescu
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Roland Gaudemer
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Rachid Belkhou
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Stefan Stanescu
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Sufal Swaraj
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Adrien Besson
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | | | | | | | - Pascal Mercère
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Paulo Da Silva
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | - Fabienne Orsini
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
| | | | - Nicolas Jaouen
- Synchrotron SOLEIL, Saint-Aubin, Gif-sur-Yvette, 91192, France
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15
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Galezowski L, Recham N, Larcher D, Miot J, Skouri-Panet F, Guyot F. Microbially Induced Mineralization of Layered Mn Oxides Electroactive in Li Batteries. Front Microbiol 2020; 11:2031. [PMID: 33013746 PMCID: PMC7511517 DOI: 10.3389/fmicb.2020.02031] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 07/31/2020] [Indexed: 12/17/2022] Open
Abstract
Nanoparticles produced by bacteria, fungi, or plants generally have physicochemical properties such as size, shape, crystalline structure, magnetic properties, and stability which are difficult to obtain by chemical synthesis. For instance, Mn(II)-oxidizing organisms promote the biomineralization of manganese oxides with specific textures under ambient conditions. Controlling their crystallinity and texture may offer environmentally relevant routes of Mn oxide synthesis with potential technological applications, e.g., for energy storage. However, whereas the electrochemical activity of synthetic (abiotic) Mn oxides has been extensively studied, the electroactivity of Mn biominerals has been seldom investigated yet. Here we evaluated the electroactivity of biologically induced biominerals produced by the Mn(II)-oxidizer bacteria Pseudomonas putida strain MnB1. For this purpose, we explored the mechanisms of Mn biomineralization, including the kinetics of Mn(II) oxidation, under different conditions. Manganese speciation, biomineral structure, and texture as well as organic matter content were determined by a combination of X-ray diffraction, electron and X-ray microscopies, and thermogravimetric analyses coupled to mass spectrometry. Our results evidence the formation of an organic–inorganic composite material and a competition between the enzymatic (biotic) oxidation of Mn(II) to Mn(IV) yielding MnO2 birnessite and the abiotic formation of Mn(III), of which the ratio depends on oxygenation levels and activity of the bacteria. We reveal that a subtle control over the conditions of the microbial environment orients the birnessite to Mn(III)-phases ratio and the porosity of the assembly, which both strongly impact the bulk electroactivity of the composite biomineral. The electrochemical properties were tested in lithium battery configuration and exhibit very appealing performances (voltage, capacity, reversibility, and power capability), thanks to the specific texture resulting from the microbially driven synthesis route. Given that such electroactive Mn biominerals are widespread in the environment, our study opens an alternative route for the synthesis of performing electrode materials under environment-friendly conditions.
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Affiliation(s)
- Laura Galezowski
- Institut de Minéralogie, Physique des Matériaux et Cosmochimie, Sorbonne Université, Muséum National d'Histoire Naturelle, CNRS UMR 7590, IRD 206, Paris, France
| | - Nadir Recham
- Laboratoire de Réactivité et Chimie des Solides, CNRS UMR 7314, Université de Picardie Jules Verne, Amiens, France.,Réseau sur le Stockage Electrochimique de l'Energie (RS2E), FR CNRS 3459, Amiens, France
| | - Dominique Larcher
- Laboratoire de Réactivité et Chimie des Solides, CNRS UMR 7314, Université de Picardie Jules Verne, Amiens, France.,Réseau sur le Stockage Electrochimique de l'Energie (RS2E), FR CNRS 3459, Amiens, France
| | - Jennyfer Miot
- Institut de Minéralogie, Physique des Matériaux et Cosmochimie, Sorbonne Université, Muséum National d'Histoire Naturelle, CNRS UMR 7590, IRD 206, Paris, France
| | - Fériel Skouri-Panet
- Institut de Minéralogie, Physique des Matériaux et Cosmochimie, Sorbonne Université, Muséum National d'Histoire Naturelle, CNRS UMR 7590, IRD 206, Paris, France
| | - François Guyot
- Institut de Minéralogie, Physique des Matériaux et Cosmochimie, Sorbonne Université, Muséum National d'Histoire Naturelle, CNRS UMR 7590, IRD 206, Paris, France.,Institut Universitaire de France (IUF), Paris, France
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16
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Gosse C, Stanescu S, Frederick J, Lefrançois S, Vecchiola A, Moskura M, Swaraj S, Belkhou R, Watts B, Haltebourg P, Blot C, Daillant J, Guenoun P, Chevallard C. A pressure-actuated flow cell for soft X-ray spectromicroscopy in liquid media. LAB ON A CHIP 2020; 20:3213-3229. [PMID: 32735308 DOI: 10.1039/c9lc01127g] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
Abstract
We present and fully characterize a flow cell dedicated to imaging in liquid at the nanoscale. Its use as a routine sample environment for soft X-ray spectromicroscopy is demonstrated, in particular through the spectral analysis of inorganic particles in water. The care taken in delineating the fluidic pathways and the precision associated with pressure actuation ensure the efficiency of fluid renewal under the beam, which in turn guarantees a successful utilization of this microfluidic tool for in situ kinetic studies. The assembly of the described flow cell necessitates no sophisticated microfabrication and can be easily implemented in any laboratory. Furthermore, the design principles we relied on are transposable to all microscopies involving strongly absorbed radiation (e.g. X-ray, electron), as well as to all kinds of X-ray diffraction/scattering techniques.
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Affiliation(s)
- Charlie Gosse
- Laboratoire de Photonique et de Nanostructures, LPN-CNRS, Route de Nozay, 91460 Marcoussis, France.
| | - Stefan Stanescu
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Joni Frederick
- Laboratoire de Photonique et de Nanostructures, LPN-CNRS, Route de Nozay, 91460 Marcoussis, France. and Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Stéphane Lefrançois
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Aymeric Vecchiola
- Laboratoire de Photonique et de Nanostructures, LPN-CNRS, Route de Nozay, 91460 Marcoussis, France. and Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Mélanie Moskura
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Sufal Swaraj
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Rachid Belkhou
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France
| | - Benjamin Watts
- Photon Science Division, Paul Scherrer Institute, 5232 Villigen, Switzerland
| | - Patrick Haltebourg
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Christian Blot
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Jean Daillant
- Synchrotron Soleil, L'Orme des Merisiers, Saint-Aubin - BP 48, 91192 Gif-sur-Yvette Cedex, France and Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Patrick Guenoun
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
| | - Corinne Chevallard
- Université Paris-Saclay, CEA, CNRS, NIMBE, 91191, Gif-sur-Yvette, France.
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17
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Intracellular amorphous Ca-carbonate and magnetite biomineralization by a magnetotactic bacterium affiliated to the Alphaproteobacteria. ISME JOURNAL 2020; 15:1-18. [PMID: 32839547 DOI: 10.1038/s41396-020-00747-3] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 07/30/2020] [Accepted: 08/10/2020] [Indexed: 11/08/2022]
Abstract
Bacteria synthesize a wide range of intracellular submicrometer-sized inorganic precipitates of diverse chemical compositions and structures, called biominerals. Their occurrences, functions and ultrastructures are not yet fully described despite great advances in our knowledge of microbial diversity. Here, we report bacteria inhabiting the sediments and water column of the permanently stratified ferruginous Lake Pavin, that have the peculiarity to biomineralize both intracellular magnetic particles and calcium carbonate granules. Based on an ultrastructural characterization using transmission electron microscopy (TEM) and synchrotron-based scanning transmission X-ray microscopy (STXM), we showed that the calcium carbonate granules are amorphous and contained within membrane-delimited vesicles. Single-cell sorting, correlative fluorescent in situ hybridization (FISH), scanning electron microscopy (SEM) and molecular typing of populations inhabiting sediments affiliated these bacteria to a new genus of the Alphaproteobacteria. The partially assembled genome sequence of a representative isolate revealed an atypical structure of the magnetosome gene cluster while geochemical analyses indicate that calcium carbonate production is an active process that costs energy to the cell to maintain an environment suitable for their formation. This discovery further expands the diversity of organisms capable of intracellular Ca-carbonate biomineralization. If the role of such biomineralization is still unclear, cell behaviour suggests that it may participate to cell motility in aquatic habitats as magnetite biomineralization does.
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18
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Mansikkala T, Patanen M, Kärkönen A, Korpinen R, Pranovich A, Ohigashi T, Swaraj S, Seitsonen J, Ruokolainen J, Huttula M, Saranpää P, Piispanen R. Lignans in Knotwood of Norway Spruce: Localisation with Soft X-ray Microscopy and Scanning Transmission Electron Microscopy with Energy Dispersive X-ray Spectroscopy. Molecules 2020; 25:molecules25132997. [PMID: 32630014 PMCID: PMC7411943 DOI: 10.3390/molecules25132997] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2020] [Revised: 06/27/2020] [Accepted: 06/29/2020] [Indexed: 12/03/2022] Open
Abstract
Lignans are bioactive compounds that are especially abundant in the Norway spruce (Picea abies L. Karst.) knotwood. By combining a variety of chromatographic, spectroscopic and imaging techniques, we were able to quantify, qualify and localise the easily extractable lignans in the xylem tissue. The knotwood samples contained 15 different lignans according to the gas chromatography-mass spectrometry analysis. They comprised 16% of the knotwood dry weight and 82% of the acetone extract. The main lignans were found to be hydroxymatairesinols HMR1 and HMR2. Cryosectioned and resin-embedded ultrathin sections of the knotwood were analysed with scanning transmission X-ray microscopy (STXM). Cryosectioning was found to retain only lignan residues inside the cell lumina. In the resin-embedded samples, lignan was interpreted to be unevenly distributed inside the cell lumina, and partially confined in deposits which were either readily present in the lumina or formed when OsO4 used in staining reacted with the lignans. Furthermore, the multi-technique characterisation enabled us to obtain information on the chemical composition of the structural components of knotwood. A simple spectral analysis of the STXM data gave consistent results with the gas chromatographic methods about the relative amounts of cell wall components (lignin and polysaccharides). The STXM analysis also indicated that a torus of a bordered pit contained aromatic compounds, possibly lignin.
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Affiliation(s)
- Tuomas Mansikkala
- Nano and Molecular Systems Research Unit, Faculty of Science, University of Oulu, P.O. Box 8000, FI-90014 Oulu, Finland; (T.M.); (M.H.)
- Biocenter Oulu, P.O. Box 5000, University of Oulu, FI-90014 Oulu, Finland
| | - Minna Patanen
- Nano and Molecular Systems Research Unit, Faculty of Science, University of Oulu, P.O. Box 8000, FI-90014 Oulu, Finland; (T.M.); (M.H.)
- Biocenter Oulu, P.O. Box 5000, University of Oulu, FI-90014 Oulu, Finland
- Correspondence: (M.P.); (R.P.); Tel.: +358-29-448-1326 (M.P.); +358-29-532-5473 (R.P.)
| | - Anna Kärkönen
- Production Systems, Natural Resources Institute Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland; (A.K.); (R.K.); (P.S.)
- Viikki Plant Science Centre, Department of Agricultural Sciences, University of Helsinki, FI-00014 Helsinki, Finland
| | - Risto Korpinen
- Production Systems, Natural Resources Institute Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland; (A.K.); (R.K.); (P.S.)
| | - Andrey Pranovich
- Wood and Paper Chemistry Research Group, Laboratory of Natural Materials Technology, Åbo Akademi University, Porthansgatan 3, FI-20500 Turku, Finland;
| | - Takuji Ohigashi
- UVSOR Facility, Institute for Molecular Science, 38 Nishigo-naka, Myodaiji, Okazaki, Aichi 444-8585, Japan;
| | - Sufal Swaraj
- SOLEIL Synchrotron, L’Orme des Merisiers, Saint-Aubin, P.O. Box 48, CEDEX, FR-91192 Gif-Sur-Yvette, France;
| | - Jani Seitsonen
- Nanomicroscopy Center, Department of Applied Physics, Aalto University, P.O. Box 15100, FI-00076 Aalto, Finland; (J.S.); (J.R.)
| | - Janne Ruokolainen
- Nanomicroscopy Center, Department of Applied Physics, Aalto University, P.O. Box 15100, FI-00076 Aalto, Finland; (J.S.); (J.R.)
| | - Marko Huttula
- Nano and Molecular Systems Research Unit, Faculty of Science, University of Oulu, P.O. Box 8000, FI-90014 Oulu, Finland; (T.M.); (M.H.)
| | - Pekka Saranpää
- Production Systems, Natural Resources Institute Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland; (A.K.); (R.K.); (P.S.)
| | - Riikka Piispanen
- Production Systems, Natural Resources Institute Finland, Latokartanonkaari 9, FI-00790 Helsinki, Finland; (A.K.); (R.K.); (P.S.)
- Correspondence: (M.P.); (R.P.); Tel.: +358-29-448-1326 (M.P.); +358-29-532-5473 (R.P.)
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19
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Jacquemot P, Viennet JC, Bernard S, Le Guillou C, Rigaud B, Delbes L, Georgelin T, Jaber M. The degradation of organic compounds impacts the crystallization of clay minerals and vice versa. Sci Rep 2019; 9:20251. [PMID: 31882914 PMCID: PMC6934458 DOI: 10.1038/s41598-019-56756-6] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2019] [Accepted: 11/28/2019] [Indexed: 12/03/2022] Open
Abstract
Expanding our capabilities to unambiguously identify ancient traces of life in ancient rocks requires laboratory experiments to better constrain the evolution of biomolecules during advanced fossilization processes. Here, we submitted RNA to hydrothermal conditions in the presence of a gel of Al-smectite stoichiometry at 200 °C for 20 days. NMR and STXM-XANES investigations revealed that the organic fraction of the residues is no longer RNA, nor the quite homogeneous aromatic-rich residue obtained in the absence of clays, but rather consists of particles of various chemical composition including amide-rich compounds. Rather than the pure clays obtained in the absence of RNA, electron microscopy (SEM and TEM) and diffraction (XRD) data showed that the mineralogy of the experimental residues includes amorphous silica and aluminosilicates mixed together with nanoscales phosphates and clay minerals. In addition to the influence of clay minerals on the degradation of organic compounds, these results evidence the influence of the presence of organic compounds on the nature of the mineral assemblage, highlighting the importance of fine-scale mineralogical investigations when discussing the nature/origin of organo-mineral microstructures found in ancient rocks.
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Affiliation(s)
- Pierre Jacquemot
- National Museum of Natural History (MNHN), Sorbonne University, CNRS, Institute of Mineralogy, Material Physics and Cosmochemistry (IMPMC - UMR 7590), F-75005, Paris, France
- Sorbonne University, CNRS, Laboratory of Molecular and Structural Archeology (LAMS - UMR 8220), F-75005, Paris, France
| | - Jean-Christophe Viennet
- National Museum of Natural History (MNHN), Sorbonne University, CNRS, Institute of Mineralogy, Material Physics and Cosmochemistry (IMPMC - UMR 7590), F-75005, Paris, France
- Sorbonne University, CNRS, Laboratory of Molecular and Structural Archeology (LAMS - UMR 8220), F-75005, Paris, France
| | - Sylvain Bernard
- National Museum of Natural History (MNHN), Sorbonne University, CNRS, Institute of Mineralogy, Material Physics and Cosmochemistry (IMPMC - UMR 7590), F-75005, Paris, France.
| | | | | | - Ludovic Delbes
- National Museum of Natural History (MNHN), Sorbonne University, CNRS, Institute of Mineralogy, Material Physics and Cosmochemistry (IMPMC - UMR 7590), F-75005, Paris, France
| | | | - Maguy Jaber
- Sorbonne University, CNRS, Laboratory of Molecular and Structural Archeology (LAMS - UMR 8220), F-75005, Paris, France
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Passos AR, Pulcinelli SH, Santilli CV, Briois V. Operando monitoring of metal sites and coke evolution during non-oxidative and oxidative ethanol steam reforming over Ni and NiCu ex-hydrotalcite catalysts. Catal Today 2019. [DOI: 10.1016/j.cattod.2018.12.054] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
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21
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Wei L, Chen Y, Wang S, Fan Q, Zhang Q, Qian F, Shen Z, Zhang Z, Hua Y, Zhu X, Xie C, Wang Z, Cao L. Suppression of higher diffraction orders in the extreme ultraviolet range by a reflective quasi-random square nano-pillar array. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2018; 89:093110. [PMID: 30278711 DOI: 10.1063/1.5034764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2018] [Accepted: 08/30/2018] [Indexed: 06/08/2023]
Abstract
Higher diffraction orders of a grating introduce so-called harmonics contamination that leads to ambiguity in the spectral data. They are also present in "monochromatic" output beams processed by grating monochromators at synchrotron radiation facilities, making calibration results of optical elements and detectors imprecise. The paper describes a new design of a reflective quasi-random square nano-pillar array grating to reduce the amount of data of the grating relief pattern that is 10 cm in size and suppresses higher diffraction orders in the extreme ultraviolet range. In addition, a laboratory-scale grating monochromator equipped with the grating has been developed to test its spectroscopy characteristics at grazing incidence. The results illustrate that it can suppress higher diffraction orders and maintain the spectral resolving power as an ordinary grating at grazing incidence. The grating has great potential in harmonics suppression in the field of synchrotron radiation, spectral diagnostics of plasma, and astrophysics.
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Affiliation(s)
- Lai Wei
- School of Physics Science and Engineering, Tongji University, Shanghai 200092, China
| | - Yong Chen
- Research Center of Laser Fusion, CAEP, Mianyang 21900, China
| | - Shaoyi Wang
- Research Center of Laser Fusion, CAEP, Mianyang 21900, China
| | - Quanping Fan
- Research Center of Laser Fusion, CAEP, Mianyang 21900, China
| | | | - Feng Qian
- Research Center of Laser Fusion, CAEP, Mianyang 21900, China
| | - Zhenxiang Shen
- School of Physics Science and Engineering, Tongji University, Shanghai 200092, China
| | - Zhong Zhang
- School of Physics Science and Engineering, Tongji University, Shanghai 200092, China
| | - Yilei Hua
- Key Laboratory of Microelectronic Devices and Integrated Technology, Institute of Microelectronics of Chinese Academy of Sciences, Beijing 100029, China
| | - Xiaoli Zhu
- Key Laboratory of Microelectronic Devices and Integrated Technology, Institute of Microelectronics of Chinese Academy of Sciences, Beijing 100029, China
| | - Changqing Xie
- Key Laboratory of Microelectronic Devices and Integrated Technology, Institute of Microelectronics of Chinese Academy of Sciences, Beijing 100029, China
| | - Zhanshan Wang
- School of Physics Science and Engineering, Tongji University, Shanghai 200092, China
| | - Leifeng Cao
- Research Center of Laser Fusion, CAEP, Mianyang 21900, China
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22
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Le Guillou C, Bernard S, De la Pena F, Le Brech Y. XANES-Based Quantification of Carbon Functional Group Concentrations. Anal Chem 2018; 90:8379-8386. [DOI: 10.1021/acs.analchem.8b00689] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Affiliation(s)
- Corentin Le Guillou
- Unité Matériaux et Transformations (UMET) MR-CNRS 8207, Université de Lille, 59655 Villeneuve d’Ascq, France
| | - Sylvain Bernard
- Muséum National d’Histoire Naturelle, Sorbonne Université, CNRS UMR 7590, IRD, Institut de Minéralogie, de Physique des Matériaux et de Cosmochimie, 75005 Paris, France
| | - Francisco De la Pena
- Unité Matériaux et Transformations (UMET) MR-CNRS 8207, Université de Lille, 59655 Villeneuve d’Ascq, France
| | - Yann Le Brech
- Laboratoire Réactions et Génie des Procédés, Université de Lorraine, CNRS, UMR 7274, 54001 Nancy, France
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23
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Wartelle A, Pablo-Navarro J, Staňo M, Bochmann S, Pairis S, Rioult M, Thirion C, Belkhou R, Teresa JMD, Magén C, Fruchart O. Transmission XMCD-PEEM imaging of an engineered vertical FEBID cobalt nanowire with a domain wall. NANOTECHNOLOGY 2018; 29:045704. [PMID: 29199972 DOI: 10.1088/1361-6528/aa9eff] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/23/2023]
Abstract
Using focused electron-beam-induced deposition, we fabricate a vertical, platinum-coated cobalt nanowire with a controlled three-dimensional structure. The latter is engineered to feature bends along the height: these are used as pinning sites for domain walls, which are obtained at remanence after saturation of the nanostructure in a horizontally applied magnetic field. The presence of domain walls is investigated using x-ray magnetic circular dichroism (XMCD) coupled to photoemission electron microscopy (PEEM). The vertical geometry of our sample combined with the low incidence of the x-ray beam produce an extended wire shadow which we use to recover the wire's magnetic configuration. In this transmission configuration, the whole sample volume is probed, thus circumventing the limitation of PEEM to surfaces. This article reports on the first study of magnetic nanostructures standing perpendicular to the substrate with XMCD-PEEM. The use of this technique in shadow mode enabled us to confirm the presence of a domain wall without direct imaging of the nanowire.
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Affiliation(s)
- A Wartelle
- Univ. Grenoble Alpes, CNRS, NEEL, F-38000 Grenoble, France
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24
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Miot J, Bernard S, Bourreau M, Guyot F, Kish A. Experimental maturation of Archaea encrusted by Fe-phosphates. Sci Rep 2017; 7:16984. [PMID: 29208997 PMCID: PMC5717249 DOI: 10.1038/s41598-017-17111-9] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2017] [Accepted: 11/22/2017] [Indexed: 11/15/2022] Open
Abstract
Burial is generally detrimental to the preservation of biological signals. It has often been assumed that (bio)mineral-encrusted microorganisms are more resistant to burial-induced degradation than non-encrusted ones over geological timescales. For the present study, we submitted Sulfolobus acidocaldarius experimentally encrusted by amorphous Fe phosphates to constrained temperature conditions (150 °C) under pressure for 1 to 5 days, thereby simulating burial-induced processes. We document the molecular and mineralogical evolution of these assemblages down to the sub-micrometer scale using X-ray diffraction, scanning and transmission electron microscopies and synchrotron-based X-ray absorption near edge structure spectroscopy at the carbon K-edge. The present results demonstrate that the presence of Fe-phosphates enhances the chemical degradation of microbial organic matter. While Fe-phosphates remained amorphous in abiotic controls, crystalline lipscombite (FeIIxFeIII3-x(PO4)2(OH)3-x) entrapping organic matter formed in the presence of S. acidocaldarius cells. Lipscombite textures (framboidal vs. bipyramidal) appeared only controlled by the initial level of encrustation of the cells, suggesting that the initial organic matter to mineral ratio influences the competition between nucleation and crystal growth. Altogether these results highlight the important interplay between minerals and organic matter during fossilization, which should be taken into account when interpreting the fossil record.
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Affiliation(s)
- J Miot
- IMPMC, Sorbonne Université, MNHN, UPMC, CNRS UMR 7590, 4 pl. Jussieu, 75005, Paris, France.
| | - S Bernard
- IMPMC, Sorbonne Université, MNHN, UPMC, CNRS UMR 7590, 4 pl. Jussieu, 75005, Paris, France
| | - M Bourreau
- MCAM, MNHN, UPMC, CNRS UMR 7245, 63 rue Buffon, 75005, Paris, France
| | - F Guyot
- IMPMC, Sorbonne Université, MNHN, UPMC, CNRS UMR 7590, 4 pl. Jussieu, 75005, Paris, France
| | - A Kish
- MCAM, MNHN, UPMC, CNRS UMR 7245, 63 rue Buffon, 75005, Paris, France
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Swaraj S, Belkhou R, Stanescu S, Rioult M, Besson A, Hitchcock AP. Performance of the HERMES beamline at the carbon K-edge. ACTA ACUST UNITED AC 2017. [DOI: 10.1088/1742-6596/849/1/012046] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
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26
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Yang X, Wang H, Hand M, Sawhney K, Kaulich B, Kozhevnikov IV, Huang Q, Wang Z. Design of a multilayer-based collimated plane-grating monochromator for tender X-ray range. JOURNAL OF SYNCHROTRON RADIATION 2017; 24:168-174. [PMID: 28009556 PMCID: PMC5182023 DOI: 10.1107/s1600577516017884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2016] [Accepted: 11/08/2016] [Indexed: 06/06/2023]
Abstract
Collimated plane-grating monochromators (cPGMs), consisting of a plane mirror and plane diffraction grating, are essential optics in synchrotron radiation sources for their remarkable flexibility and good optical characteristics in the soft X-ray region. However, the poor energy transport efficiency of a conventional cPGM (single-layer-coated) degrades the source intensity and leaves reduced flux at the sample, especially for the tender X-ray range (1-4 keV) that covers a large number of K- and L-edges of medium-Z elements, and M-edges of high-Z elements. To overcome this limitation, the use of a multilayer-based cPGM is proposed, combining a multilayer-coated plane mirror with blazed multilayer gratings. With this combination, the effective efficiency of cPGMs can be increased by an order of magnitude compared with the conventional single-layer cPGMs. In addition, higher resolving power can be achieved with improved efficiency by increasing the blaze angle and working at higher diffraction order.
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Affiliation(s)
- Xiaowei Yang
- MOE Key Laboratory of Advanced Micro-Structured Materials, Institute of Precision Optical Engineering, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People’s Republic of China
- Diamond Light Source Ltd, Harwell Science and Inovation Campus, Didcot OX11 0DE, UK
| | - Hongchang Wang
- Diamond Light Source Ltd, Harwell Science and Inovation Campus, Didcot OX11 0DE, UK
| | - Matthew Hand
- Diamond Light Source Ltd, Harwell Science and Inovation Campus, Didcot OX11 0DE, UK
| | - Kawal Sawhney
- Diamond Light Source Ltd, Harwell Science and Inovation Campus, Didcot OX11 0DE, UK
| | - Burkhard Kaulich
- Diamond Light Source Ltd, Harwell Science and Inovation Campus, Didcot OX11 0DE, UK
| | - Igor V. Kozhevnikov
- Shubnikov Institute of Crystallography of Federal Scientific Research Centre ‘Crystallography and Photonics’ of Russian Academy of Sciences, Moscow 119333, Russian Federation
| | - Qiushi Huang
- MOE Key Laboratory of Advanced Micro-Structured Materials, Institute of Precision Optical Engineering, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People’s Republic of China
| | - Zhanshan Wang
- MOE Key Laboratory of Advanced Micro-Structured Materials, Institute of Precision Optical Engineering, School of Physics Science and Engineering, Tongji University, Shanghai 200092, People’s Republic of China
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Barla A, Nicolás J, Cocco D, Valvidares SM, Herrero-Martín J, Gargiani P, Moldes J, Ruget C, Pellegrin E, Ferrer S. Design and performance of BOREAS, the beamline for resonant X-ray absorption and scattering experiments at the ALBA synchrotron light source. JOURNAL OF SYNCHROTRON RADIATION 2016; 23:1507-1517. [PMID: 27787258 DOI: 10.1107/s1600577516013461] [Citation(s) in RCA: 57] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2016] [Accepted: 08/22/2016] [Indexed: 05/26/2023]
Abstract
The optical design of the BOREAS beamline operating at the ALBA synchrotron radiation facility is described. BOREAS is dedicated to resonant X-ray absorption and scattering experiments using soft X-rays, in an unusually extended photon energy range from 80 to above 4000 eV, and with full polarization control. Its optical scheme includes a fixed-included-angle, variable-line-spacing grating monochromator and a pair of refocusing mirrors, equipped with benders, in a Kirkpatrick-Baez arrangement. It is equipped with two end-stations, one for X-ray magnetic circular dichroism and the other for resonant magnetic scattering. The commissioning results show that the expected beamline performance is achieved both in terms of energy resolution and of photon flux at the sample position.
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Affiliation(s)
- Alessandro Barla
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
| | - Josep Nicolás
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
| | - Daniele Cocco
- SLAC National Accelerator Laboratory, 94025 Menlo Park, USA
| | | | | | - Pierluigi Gargiani
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
| | - Jairo Moldes
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
| | - Claude Ruget
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
| | - Eric Pellegrin
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
| | - Salvador Ferrer
- ALBA Synchrotron Light Source, E-08290 Cerdanyola del Vallès, Barcelona, Spain
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