Grand challenges in mapping the human brain: NSF workshop report

Neuromodulation Management of Chronic Neuropathic Pain in The Central Nervous system

Neuromodulation is becoming one of the clinical tools for treating chronic neuropathic pain by transmitting controlled physical energy to the pre-identified neural targets in the central nervous system. Its nature of drug-free, non-addictive and improved targeting have attracted increasing attention among neuroscience research and clinical practices. This article provides a brief overview of the neuropathic pain and pharmacological routines for treatment, summarizes both the invasive and non-invasive neuromodulation modalities for pain management, and highlights an emerging brain stimulation technology, transcranial focused ultrasound (tFUS) with a focus on ultrasound transducer devices and the achieved neuromodulation effects and applications on pain management. Practical considerations of spatial guidance for tFUS are discussed for clinical applications. The safety of transcranial ultrasound neuromodulation and its future prospectives on pain management are also discussed.

A Newcomer's Guide to Functional Near Infrared Spectroscopy Experiments

This review presents a practical primer for functional near-infrared spectroscopy (fNIRS) with respect to technology, experimentation, and analysis software. Its purpose is to jump-start interested practitioners considering utilizing a non-invasive, versatile, nevertheless challenging window into the brain using optical methods. We briefly recapitulate relevant anatomical and optical foundations and give a short historical overview. We describe competing types of illumination (trans-illumination, reflectance, and differential reflectance) and data collection methods (continuous wave, time domain and frequency domain). Basic components (light sources, detection, and recording components) of fNIRS systems are presented. Advantages and limitations of fNIRS techniques are offered, followed by a list of very practical recommendations for its use. A variety of experimental and clinical studies with fNIRS are sampled, shedding light on many brain-related ailments. Finally, we describe and discuss a number of freely available analysis and presentation packages suited for data analysis. In conclusion, we recommend fNIRS due to its ever-growing body of clinical applications, state-of-the-art neuroimaging technique and manageable hardware requirements. It can be safely concluded that fNIRS adds a new arrow to the quiver of neuro-medical examinations due to both its great versatility and limited costs.

Discovering hierarchical common brain networks via multimodal deep belief network

Studying a common architecture reflecting both brain's structural and functional organizations across individuals and populations in a hierarchical way has been of significant interest in the brain mapping field. Recently, deep learning models exhibited ability in extracting meaningful hierarchical structures from brain imaging data, e.g., fMRI and DTI. However, deep learning models have been rarely used to explore the relation between brain structure and function yet. In this paper, we proposed a novel multimodal deep believe network (DBN) model to discover and quantitatively represent the hierarchical organizations of common and consistent brain networks from both fMRI and DTI data. A prominent characteristic of DBN is that it is capable of extracting meaningful features from complex neuroimaging data with a hierarchical manner. With our proposed DBN model, three hierarchical layers with hundreds of common and consistent brain networks across individual brains are successfully constructed through learning a large dimension of representative features from fMRI/DTI data.

Source-Informed Segmentation: A Data-Driven Approach for the Temporal Segmentation of EEG

GOAL

Understanding the dynamics of brain function through non-invasive monitoring techniques requires the development of computational methods that can deal with the non-stationary properties of recorded activities. As a solution to this problem, a new data-driven segmentation method for recordings obtained through electroencephalography (EEG) is presented.

METHODS

The proposed method utilizes singular value decomposition (SVD) to identify the time intervals in the EEG recordings during which the spatial distribution of clusters of active cortical neurons remains quasi-stationary. Theoretical analysis shows that the spatial locality features of these clusters can be, asymptotically, captured by the most significant left singular subspace of the EEG data. A reference/sliding window approach is employed to dynamically extract this feature subspace, and the running projection error is monitored for significant changes using Kolmogorov-Smirnov test.

RESULTS

Simulation results, for a wide range of possible scenarios regarding the spatial distribution of active cortical neurons, show that the algorithm is successful in accurately detecting the segmental structure of the simulated EEG data. The algorithm is also applied to experimental EEG recordings of a modified visual oddball task. Results identify a unique sequence of dynamic patterns in the event-related potential (ERP) response to each of the three involved stimuli.

CONCLUSION

The proposed method, without using source localization methods or scalp topographical maps, is able to identify intervals of quasi-stationarity in the EEG recordings.

SIGNIFICANCE

The proposed segmentation technique can offer new insights on the dynamics of functional organization of the brain in action.

Characterization of a Novel Polypyrrole (PPy) Conductive Polymer Coated Patterned Vertical CNT (pvCNT) Dry ECG Electrode

Conventional electrode-based technologies, such as the electrocardiogram (ECG), capture physiological signals using an electrolyte solution or gel that evaporates shortly after exposure, resulting in a decrease in the quality of the signal. Previously, we reported a novel dry impedimetric electrode using patterned vertically-aligned Carbon NanoTubes (pvCNT) for biopotential measurement applications. The mechanical adhesion strength of the pvCNT electrode to the substrate was weak, hence, we have improved this electrode using a thin coating of the conductive polymer polypyrrole (PPy) that strengthens its mechanical properties. Multiwall CNTs were grown vertically on a circular stainless-steel disc (⌀ = 10 mm) substrate of 50 µm thickness forming patterned pillars on a square base (100 µm × 100 µm) with an inter-pillar spacing of 200 µm and height up to 1.5 mm. The PPy coating procedure involves applying 10 µL of PPy mixed with 70% ethyl alcohol solution and rapid drying at 300 °C using a hot air gun at a distance of 10 cm. A comparative study demonstrated that the coated pvCNT had higher impedance compared to a non-coated pvCNT but lower impedance compared to the standard gel electrode. The PPy-coated pvCNT had comparable signal capture quality but stronger mechanical adhesion to the substrate.

Electrophysiological Source Imaging: A Noninvasive Window to Brain Dynamics

Brain activity and connectivity are distributed in the three-dimensional space and evolve in time. It is important to image brain dynamics with high spatial and temporal resolution. Electroencephalography (EEG) and magnetoencephalography (MEG) are noninvasive measurements associated with complex neural activations and interactions that encode brain functions. Electrophysiological source imaging estimates the underlying brain electrical sources from EEG and MEG measurements. It offers increasingly improved spatial resolution and intrinsically high temporal resolution for imaging large-scale brain activity and connectivity on a wide range of timescales. Integration of electrophysiological source imaging and functional magnetic resonance imaging could further enhance spatiotemporal resolution and specificity to an extent that is not attainable with either technique alone. We review methodological developments in electrophysiological source imaging over the past three decades and envision its future advancement into a powerful functional neuroimaging technology for basic and clinical neuroscience applications.

Electromagnetic source imaging using simultaneous scalp EEG and intracranial EEG: An emerging tool for interacting with pathological brain networks

OBJECTIVE

The goal of this study is to investigate the performance, merits and limitations of source imaging using intracranial EEG (iEEG) recordings and to compare its accuracy to the results of EEG source imaging. Accuracy in this study, is measured both by determining the location and inter-nodal connectivity of underlying brain networks.

METHODS

Systematic computer simulation studies are conducted to evaluate iEEG-based source imaging vs. EEG-based source imaging, and source imaging using both EEG and iEEG. To test the source imaging models, networks of inter-connected nodes (in terms of activity) are simulated. The location of the network nodes is randomly selected within a realistic geometry head model and a connectivity link is created among these nodes based on a multi-variate auto-regressive (MVAR) model. Then the forward problem is solved to calculate the potentials at the electrodes and noise (white and correlated) is added to these simulated potentials to simulate realistic measurements. Subsequently, the inverse problem is solved and an algorithm based on principle component analysis is performed on the estimated source activities to determine the location of the simulated network nodes. The activity of these nodes (over time), is then extracted, and used to estimate the connectivity links among the mentioned nodes using Granger causality analysis.

RESULTS

Source imaging based on iEEG recordings may or may not improve the accuracy in localization, depending on the number and location of active nodes relative to iEEG electrodes and to other nodes within the network. However, our simulation results suggest that combining EEG and iEEG modalities (simultaneous scalp and intracranial recordings) can improve the imaging accuracy significantly.

CONCLUSIONS

While iEEG source imaging is useful in estimating the exact location of sources near the iEEG electrodes, combining EEG and iEEG recordings can achieve a more accurate imaging due to the high spatial coverage of the scalp electrodes and the added near field information provided by the iEEG electrodes.

SIGNIFICANCE

The present results suggest the feasibility of localizing brain electrical sources from iEEG recordings and improving EEG source localization using simultaneous EEG and iEEG recordings to cover the whole brain. The hybrid EEG and iEEG source imaging can assist the clinicians when unequivocal decisions about determining the epileptogenic zone cannot be reached using a single modality.

Ultrahigh-Density 256-Channel Neural Sensing Microsystem Using TSV-Embedded Neural Probes

Highly integrated neural sensing microsystems are crucial to capture accurate signals for brain function investigations. In this paper, a 256-channel neural sensing microsystem with a sensing area of 5 × 5 mm ² is presented based on 2.5-D through-silicon-via (TSV) integration. This microsystem composes of dissolvable μ-needles, TSV-embedded μ-probes, 256-channel neural amplifiers, 11-bit area-power-efficient successive approximation register analog-to-digital converters, and serializers. This microsystem can detect 256 electrocorticography and local field potential signals within a small area of 5 mm × 5 mm. The neural amplifier realizes 57.8 dB gain with only 9.8 μW per channel. The overall power of this microsystem is only 3.79 mW for 256-channel neural sensing. A smaller microsystem with dimension of 6 mm × 4 mm has been also implanted into rat brain for somatosensory evoked potentials (SSEPs) recording by using contralateral and ipsilateral electrical stimuli with intensity from 0.2 to 1.0 mA, and successfully observed different SSEPs from left somatosensory cortex of a rat.

Focused Ultrasound Help Realize High Spatiotemporal Brain Imaging?-A Concept on Acousto-Electrophysiological Neuroimaging

We present a concept for integrating focused ultrasound (FUS) with electrophysiological neuroimaging, in order to achieve high spatiotemporal resolution brain imaging. This approach, which we are tentatively calling acousto-electrophysiological neuroimaging, leverages on the spatial focality and noninvasiveness of FUS and may potentially lead to a noninvasive human brain imaging modality with high resolution in both space and time domains. By the use of modulated FUS, spatial selectivity can be accomplished for high-resolution electrophysiological neuroimaging. Frequency shifting in resulting magnetic signals (using modulated FUS) may potentially open the door for a room temperature magnetoencephalography device.

A network engineering perspective on probing and perturbing cognition with neurofeedback

Network science and engineering provide a flexible and generalizable tool set to describe and manipulate complex systems characterized by heterogeneous interaction patterns among component parts. While classically applied to social systems, these tools have recently proven to be particularly useful in the study of the brain. In this review, we describe the nascent use of these tools to understand human cognition, and we discuss their utility in informing the meaningful and predictable perturbation of cognition in combination with the emerging capabilities of neurofeedback. To blend these disparate strands of research, we build on emerging conceptualizations of how the brain functions (as a complex network) and how we can develop and target interventions or modulations (as a form of network control). We close with an outline of current frontiers that bridge neurofeedback, connectomics, and network control theory to better understand human cognition.

Noninvasive Electromagnetic Source Imaging and Granger Causality Analysis: An Electrophysiological Connectome (eConnectome) Approach

OBJECTIVE

Combined source-imaging techniques and directional connectivity analysis can provide useful information about the underlying brain networks in a noninvasive fashion. Source-imaging techniques have been used successfully to either determine the source of activity or to extract source time-courses for Granger causality analysis, previously. In this work, we utilize source-imaging algorithms to both find the network nodes [regions of interest (ROI)] and then extract the activation time series for further Granger causality analysis. The aim of this work is to find network nodes objectively from noninvasive electromagnetic signals, extract activation time-courses, and apply Granger analysis on the extracted series to study brain networks under realistic conditions.

METHODS

Source-imaging methods are used to identify network nodes and extract time-courses and then Granger causality analysis is applied to delineate the directional functional connectivity of underlying brain networks. Computer simulations studies where the underlying network (nodes and connectivity pattern) is known were performed; additionally, this approach has been evaluated in partial epilepsy patients to study epilepsy networks from interictal and ictal signals recorded by EEG and/or Magnetoencephalography (MEG).

RESULTS

Localization errors of network nodes are less than 5 mm and normalized connectivity errors of ∼20% in estimating underlying brain networks in simulation studies. Additionally, two focal epilepsy patients were studied and the identified nodes driving the epileptic network were concordant with clinical findings from intracranial recordings or surgical resection.

CONCLUSION

Our study indicates that combined source-imaging algorithms with Granger causality analysis can identify underlying networks precisely (both in terms of network nodes location and internodal connectivity).

SIGNIFICANCE

The combined source imaging and Granger analysis technique is an effective tool for studying normal or pathological brain conditions.

Imaging brain source extent from EEG/MEG by means of an iteratively reweighted edge sparsity minimization (IRES) strategy

Estimating extended brain sources using EEG/MEG source imaging techniques is challenging. EEG and MEG have excellent temporal resolution at millisecond scale but their spatial resolution is limited due to the volume conduction effect. We have exploited sparse signal processing techniques in this study to impose sparsity on the underlying source and its transformation in other domains (mathematical domains, like spatial gradient). Using an iterative reweighting strategy to penalize locations that are less likely to contain any source, it is shown that the proposed iteratively reweighted edge sparsity minimization (IRES) strategy can provide reasonable information regarding the location and extent of the underlying sources. This approach is unique in the sense that it estimates extended sources without the need of subjectively thresholding the solution. The performance of IRES was evaluated in a series of computer simulations. Different parameters such as source location and signal-to-noise ratio were varied and the estimated results were compared to the targets using metrics such as localization error (LE), area under curve (AUC) and overlap between the estimated and simulated sources. It is shown that IRES provides extended solutions which not only localize the source but also provide estimation for the source extent. The performance of IRES was further tested in epileptic patients undergoing intracranial EEG (iEEG) recording for pre-surgical evaluation. IRES was applied to scalp EEGs during interictal spikes, and results were compared with iEEG and surgical resection outcome in the patients. The pilot clinical study results are promising and demonstrate a good concordance between noninvasive IRES source estimation with iEEG and surgical resection outcomes in the same patients. The proposed algorithm, i.e. IRES, estimates extended source solutions from scalp electromagnetic signals which provide relatively accurate information about the location and extent of the underlying source.

Electrophysiological Source Imaging of Brain Networks Perturbed by Low-Intensity Transcranial Focused Ultrasound

OBJECTIVE

Transcranial focused ultrasound (tFUS) has been introduced as a noninvasive neuromodulation technique with good spatial selectivity. We report an experimental investigation to detect noninvasive electrophysiological response induced by low-intensity tFUS in an in vivo animal model and perform electrophysiological source imaging (ESI) of tFUS-induced brain activity from noninvasive scalp EEG recordings.

METHODS

A single-element ultrasound transducer was used to generate low-intensity tFUS ( ) and induce brain activation at multiple selected sites in an in vivo rat model. Up to 16 scalp electrodes were used to record tFUS-induced EEG. Event-related potentials were analyzed in time, frequency, and spatial domains. Current source distributions were estimated by ESI to reconstruct spatiotemporal distributions of brain activation induced by tFUS.

RESULTS

Neuronal activation was observed following low-intensity tFUS, as correlated to tFUS intensity and sonication duration. ESI revealed initial focal activation in cortical area corresponding to tFUS stimulation site and the activation propagating to surrounding areas over time.

CONCLUSION

The present results demonstrate the feasibility of noninvasively recording brain electrophysiological response in vivo following low-intensity tFUS stimulation, and the feasibility of imaging spatiotemporal distributions of brain activation as induced by tFUS in vivo.

SIGNIFICANCE

The present approach may lead to a new means of imaging brain activity using tFUS perturbation and a closed-loop ESI-guided tFUS neuromodulation modality.

Decoding Brain States Based on Magnetoencephalography From Prespecified Cortical Regions

Brain state decoding based on whole-head MEG has been extensively studied over the past decade. Recent MEG applications pose an emerging need of decoding brain states based on MEG signals originating from prespecified cortical regions. Toward this goal, we propose a novel region-of-interest-constrained discriminant analysis algorithm (RDA) in this paper. RDA integrates linear classification and beamspace transformation into a unified framework by formulating a constrained optimization problem. Our experimental results based on human subjects demonstrate that RDA can efficiently extract the discriminant pattern from prespecified cortical regions to accurately distinguish different brain states.

New Perspectives on Neuroengineering and Neurotechnologies: NSF-DFG Workshop Report

GOAL

To identify and overcome barriers to creating new neurotechnologies capable of restoring both motor and sensory function in individuals with neurological conditions.

METHODS

This report builds upon the outcomes of a joint workshop between the US National Science Foundation and the German Research Foundation on New Perspectives in Neuroengineering and Neurotechnology convened in Arlington, VA, USA, November 13-14, 2014.

RESULTS

The participants identified key technological challenges for recording and manipulating neural activity, decoding, and interpreting brain data in the presence of plasticity, and early considerations of ethical and social issues pertinent to the adoption of neurotechnologies.

CONCLUSIONS

The envisaged progress in neuroengineering requires tightly integrated hardware and signal processing efforts, advances in understanding of physiological adaptations to closed-loop interactions with neural devices, and an open dialog with stakeholders and potential end-users of neurotechnology.

SIGNIFICANCE

The development of new neurotechnologies (e.g., bidirectional brain-computer interfaces) could significantly improve the quality of life of people living with the effects of brain or spinal cord injury, or other neurodegenerative diseases. Focused efforts aimed at overcoming the remaining barriers at the electrode tissue interface, developing implantable hardware with on-board computation, and refining stimulation methods to precisely activate neural tissue will advance both our understanding of brain function and our ability to treat currently intractable disorders of the nervous system.

Building neuroscientific evidence and creating best practices for Active and Healthy Aging through ubiquitous exergaming and Living Labs

Ageing is a major global demographic trend, which seems to be intensified. The earlier detection of risks associated with ageing, can enable earlier intervention to ameliorate their negative consequences. Many of these recent efforts are associated with the use of Information and Communication Technologies (ICTs) and the stemming from them innovations in the fight against this age related decline and frailty. Ubiquitous unobtrusive monitoring and training (recently much blended by means of exergames) has become reality due to the availability of new mobile sensors and devices and the emergence of new technologies and services. The current piece of work presents the different milestones we have achieved as best practices during the past seven years of piloting training and exergaming ICT components in an effort to support Active and Healthy Aging. Our impact verification and results validation methodologies are revisited here in an effort to outline best practices and build up neuroscientific evidence. Finally, this paper demonstrates how the construction of an Active and Healthy Aging Living Lab was materialised in an attempt to gauge evidence based research in the field of active and health aging.

EEG Source Imaging Enhances the Decoding of Complex Right-Hand Motor Imagery Tasks

GOAL

Sensorimotor-based brain-computer interfaces (BCIs) have achieved successful control of real and virtual devices in up to three dimensions; however, the traditional sensor-based paradigm limits the intuitive use of these systems. Many control signals for state-of-the-art BCIs involve imagining the movement of body parts that have little to do with the output command, revealing a cognitive disconnection between the user's intent and the action of the end effector. Therefore, there is a need to develop techniques that can identify with high spatial resolution the self-modulated neural activity reflective of the actions of a helpful output device.

METHODS

We extend previous EEG source imaging (ESI) work to decoding natural hand/wrist manipulations by applying a novel technique to classifying four complex motor imaginations of the right hand: flexion, extension, supination, and pronation.

RESULTS

We report an increase of up to 18.6% for individual task classification and 12.7% for overall classification using the proposed ESI approach over the traditional sensor-based method.

CONCLUSION

ESI is able to enhance BCI performance of decoding complex right-hand motor imagery tasks.

SIGNIFICANCE

This study may lead to the development of BCI systems with naturalistic and intuitive motor imaginations, thus facilitating broad use of noninvasive BCIs.

A Space-Time-Frequency Dictionary for Sparse Cortical Source Localization

OBJECTIVE

Cortical source imaging aims at identifying activated cortical areas on the surface of the cortex from the raw electroencephalogram (EEG) data. This problem is ill posed, the number of channels being very low compared to the number of possible source positions.

METHODS

In some realistic physiological situations, the active areas are sparse in space and of short time durations, and the amount of spatio-temporal data to carry the inversion is then limited. In this study, we propose an original data driven space-time-frequency (STF) dictionary which takes into account simultaneously both spatial and time-frequency sparseness while preserving smoothness in the time frequency (i.e., nonstationary smooth time courses in sparse locations). Based on these assumptions, we take benefit of the matching pursuit (MP) framework for selecting the most relevant atoms in this highly redundant dictionary.

RESULTS

We apply two recent MP algorithms, single best replacement (SBR) and source deflated matching pursuit, and we compare the results using a spatial dictionary and the proposed STF dictionary to demonstrate the improvements of our multidimensional approach. We also provide comparison using well-established inversion methods, FOCUSS and RAP-MUSIC, analyzing performances under different degrees of nonstationarity and signal to noise ratio.

CONCLUSION

Our STF dictionary combined with the SBR approach provides robust performances on realistic simulations. From a computational point of view, the algorithm is embedded in the wavelet domain, ensuring high efficiency in term of computation time.

SIGNIFICANCE

The proposed approach ensures fast and accurate sparse cortical localizations on highly nonstationary and noisy data.

Unobtrusive ambulatory EEG using a smartphone and flexible printed electrodes around the ear

This study presents first evidence that reliable EEG data can be recorded with a new cEEGrid electrode array, which consists of ten electrodes printed on flexible sheet and arranged in a c-shape to fit around the ear. Ten participants wore two cEEGrid systems for at least seven hours. Using a smartphone for stimulus delivery and signal acquisition, resting EEG and auditory oddball data were collected in the morning and in the afternoon six to seven hours apart. Analysis of resting EEG data confirmed well-known spectral differences between eyes open and eyes closed conditions. The ERP results confirmed the predicted condition effects with significantly larger P300 amplitudes for target compared to standard tones, and a high test-retest reliability of the P300 amplitude (r > = .74). Moreover, a linear classifier trained on data from the morning session revealed similar performance in classification accuracy for the morning and the afternoon sessions (both > 70%). These findings demonstrate the feasibility of concealed and comfortable brain activity acquisition over many hours.

Systems Neuroengineering: Understanding and Interacting with the Brain

In this paper, we review the current state-of-the-art techniques used for understanding the inner workings of the brain at a systems level. The neural activity that governs our everyday lives involves an intricate coordination of many processes that can be attributed to a variety of brain regions. On the surface, many of these functions can appear to be controlled by specific anatomical structures; however, in reality, numerous dynamic networks within the brain contribute to its function through an interconnected web of neuronal and synaptic pathways. The brain, in its healthy or pathological state, can therefore be best understood by taking a systems-level approach. While numerous neuroengineering technologies exist, we focus here on three major thrusts in the field of systems neuroengineering: neuroimaging, neural interfacing, and neuromodulation. Neuroimaging enables us to delineate the structural and functional organization of the brain, which is key in understanding how the neural system functions in both normal and disease states. Based on such knowledge, devices can be used either to communicate with the neural system, as in neural interface systems, or to modulate brain activity, as in neuromodulation systems. The consideration of these three fields is key to the development and application of neuro-devices. Feedback-based neuro-devices require the ability to sense neural activity (via a neuroimaging modality) through a neural interface (invasive or noninvasive) and ultimately to select a set of stimulation parameters in order to alter neural function via a neuromodulation modality. Systems neuroengineering refers to the use of engineering tools and technologies to image, decode, and modulate the brain in order to comprehend its functions and to repair its dysfunction. Interactions between these fields will help to shape the future of systems neuroengineering-to develop neurotechniques for enhancing the understanding of whole-brain function and dysfunction, and the management of neurological and mental disorders.

Noninvasive Brain-Computer Interfaces Based on Sensorimotor Rhythms

Brain-computer interfaces (BCIs) have been explored in the field of neuroengineering to investigate how the brain can use these systems to control external devices. We review the principles and approaches we have taken to develop a sensorimotor rhythm EEG based brain-computer interface (BCI). The methods include developing BCI systems incorporating the control of physical devices to increase user engagement, improving BCI systems by inversely mapping scalp-recorded EEG signals to the cortical source domain, integrating BCI with noninvasive neuromodulation strategies to improve learning, and incorporating mind-body awareness training to enhance BCI learning and performance. The challenges and merits of these strategies are discussed, together with recent findings. Our work indicates that the sensorimotor-rhythm-based noninvasive BCI has the potential to provide communication and control capabilities as an alternative to physiological motor pathways.

Network community structure detection for directional neural networks inferred from multichannel multisubject EEG data

In many neuroscience applications, one is interested in identifying the functional brain modules from multichannel, multiple subject neuroimaging data. However, most of the existing network community structure detection algorithms are limited to single undirected networks and cannot reveal the common community structure for a collection of directed networks. In this paper, we propose a community detection algorithm for weighted asymmetric (directed) networks representing the effective connectivity in the brain. Moreover, the issue of finding a common community structure across subjects is addressed by maximizing the total modularity of the group. Finally, the proposed community detection algorithm is applied to multichannel multisubject electroencephalogram data.

High-definition transcranial direct current stimulation induces both acute and persistent changes in broadband cortical synchronization: a simultaneous tDCS-EEG study

The goal of this study was to develop methods for simultaneously acquiring electrophysiological data during high-definition transcranial direct current stimulation (tDCS) using high-resolution electroencephalography (EEG). Previous studies have pointed to the after-effects of tDCS on both motor and cognitive performance, and there appears to be potential for using tDCS in a variety of clinical applications. However, little is known about the real-time effects of tDCS on rhythmic cortical activity in humans due to the technical challenges of simultaneously obtaining electrophysiological data during ongoing stimulation. Furthermore, the mechanisms of action of tDCS in humans are not well understood. We have conducted a simultaneous tDCS-EEG study in a group of healthy human subjects. Significant acute and persistent changes in spontaneous neural activity and event-related synchronization (ERS) were observed during and after the application of high-definition tDCS over the left sensorimotor cortex. Both anodal and cathodal stimulation resulted in acute global changes in broadband cortical activity which were significantly different than the changes observed in response to sham stimulation. For the group of eight subjects studied, broadband individual changes in spontaneous activity during stimulation were apparent both locally and globally. In addition, we found that high-definition tDCS of the left sensorimotor cortex can induce significant ipsilateral and contralateral changes in event-related desynchronization and ERS during motor imagination following the end of the stimulation period. Overall, our results demonstrate the feasibility of acquiring high-resolution EEG during high-definition tDCS and provide evidence that tDCS in humans directly modulates rhythmic cortical synchronization during and after its administration.

Effect of EEG electrode number on epileptic source localization in pediatric patients

OBJECTIVE

To investigate the relationship between EEG source localization and the number of scalp EEG recording channels.

METHODS

128 EEG channel recordings of 5 pediatric patients with medically intractable partial epilepsy were used to perform source localization of interictal spikes. The results were compared with surgical resection and intracranial recordings. Various electrode configurations were tested and a series of computer simulations based on a realistic head boundary element model were also performed in order to further validate the clinical findings.

RESULTS

The improvement seen in source localization substantially decreases as the number of electrodes increases. This finding was evaluated using the surgical resection, intracranial recordings and computer simulation. It was also shown in the simulation that increasing the electrode numbers could remedy the localization error of deep sources. A plateauing effect was seen in deep and superficial sources with further increasing the electrode number.

CONCLUSION

The source localization is improved when electrode numbers increase, but the absolute improvement in accuracy decreases with increasing electrode number.

SIGNIFICANCE

Increasing the electrode number helps decrease localization error and thus can more ably assist the physician to better plan for surgical procedures.

2.5D heterogeneously integrated microsystem for high-density neural sensing applications

Heterogeneously integrated and miniaturized neural sensing microsystems are crucial for brain function investigation. In this paper, a 2.5D heterogeneously integrated bio-sensing microsystem with μ-probes and embedded through-silicon-via (TSVs) is presented for high-density neural sensing applications. This microsystem is composed of μ-probes with embedded TSVs, 4 dies and a silicon interposer. For capturing 16-channel neural signals, a 24 × 24 μ-probe array with embedded TSVs is fabricated on a 5×5 mm(2) chip and bonded on the back side of the interposer. Thus, each channel contains 6 × 6 μ -probes with embedded TSVs. Additionally, the 4 dies are bonded on the front side of the interposer and designed for biopotential acquisition, feature extraction and classification via low-power analog front-end (AFE) circuits, area-power-efficient analog-to-digital converters (ADCs), configurable discrete wavelet transforms (DWTs), filters, and a MCU. An on-interposer bus ( μ-SPI) is designed for transferring data on the interposer. Finally, the successful in-vivo test demonstrated the proposed 2.5D heterogeneously integrated bio-sensing microsystem. The overall power of this microsystem is only 676.3 μW for 16-channel neural sensing.

Construct and assess multimodal mouse brain connectomes via joint modeling of multi-scale DTI and neuron tracer data

Mapping the neuronal wiring diagrams in the brain at multiple spatial scales has been one of the major brain mapping objectives. Macro-scale medical imaging modalities such as diffusion tensor imaging (DTI) and meso-scale biological imaging such as serial two-photon tomography have emerged as the prominent tools to reveal structural connectivity patterns at multiple scales. However, a significant gap that whether/how DTI data and microscopic data are correlated with each other for the s ame species of mammalian brains,e.g., mouse brains, has been rarely explored. To bridge this knowledge gap, this work aims to construct multi-modal mouse brain connectomes via joint modeling of macro-scale DTI data and meso-scale neuronal tracing data. Specifically, the high-resolution DTI data and its streamline tractography result are mapped to the Allen Mouse Brain Atlas, in which the high-density axonal projections were already mapped by microscopic serial two-photon tomography. Then, multi-modal connectomes were constructed and the multi-view spectral clustering method is employed to assess consistent and discrepant connectivity patterns across the multi-scale multi-modal connectomes. Experimental results demonstrated the importance of fusing multimodal, multi-scale imaging modalities for structural connectivity and connectome mapping.

Radical embodied cognitive neuroscience: addressing "grand challenges" of the mind sciences

It is becoming ever more accepted that investigations of mind span the brain, body, and environment. To broaden the scope of what is relevant in such investigations is to increase the amount of data scientists must reckon with. Thus, a major challenge facing scientists who study the mind is how to make big data intelligible both within and between fields. One way to face this challenge is to structure the data within a framework and to make it intelligible by means of a common theory. Radical embodied cognitive neuroscience can function as such a framework, with dynamical systems theory as its methodology, and self-organized criticality as its theory.

Assessing dynamic spectral causality by lagged adaptive directed transfer function and instantaneous effect factor

It is of significance to assess the dynamic spectral causality among physiological signals. Several practical estimators adapted from spectral Granger causality have been exploited to track dynamic causality based on the framework of time-varying multivariate autoregressive (tvMVAR) models. The nonzero covariance of the model's residuals has been used to describe the instantaneous effect phenomenon in some causality estimators. However, for the situations with Gaussian residuals in some autoregressive models, it is challenging to distinguish the directed instantaneous causality if the sufficient prior information about the "causal ordering" is missing. Here, we propose a new algorithm to assess the time-varying causal ordering of tvMVAR model under the assumption that the signals follow the same acyclic causal ordering for all time lags and to estimate the instantaneous effect factor (IEF) value in order to track the dynamic directed instantaneous connectivity. The time-lagged adaptive directed transfer function (ADTF) is also estimated to assess the lagged causality after removing the instantaneous effect. In this study, we first investigated the performance of the causal-ordering estimation algorithm and the accuracy of IEF value. Then, we presented the results of IEF and time-lagged ADTF method by comparing with the conventional ADTF method through simulations of various propagation models. Statistical analysis results suggest that the new algorithm could accurately estimate the causal ordering and give a good estimation of the IEF values in the Gaussian residual conditions. Meanwhile, the time-lagged ADTF approach is also more accurate in estimating the time-lagged dynamic interactions in a complex nervous system after extracting the instantaneous effect. In addition to the simulation studies, we applied the proposed method to estimate the dynamic spectral causality on real visual evoked potential (VEP) data in a human subject. Its usefulness in time-variant spectral causality assessment was demonstrated through the mutual causality investigation of brain activity during the VEP experiments.

Noninvasive imaging of the high frequency brain activity in focal epilepsy patients

High-frequency (HF) activity represents a potential biomarker of the epileptogenic zone in epilepsy patients, the removal of which is considered to be crucial for seizure-free surgical outcome. We proposed a high frequency source imaging (HFSI) approach to noninvasively image the brain sources of the scalp-recorded HF EEG activity. Both computer simulation and clinical patient data analysis were performed to investigate the feasibility of using the HFSI approach to image the sources of HF activity from noninvasive scalp EEG recordings. The HF activity was identified from high-density scalp recordings after high-pass filtering the EEG data and the EEG segments with HF activity were concatenated together to form repetitive HF activity. Independent component analysis was utilized to extract the components corresponding to the HF activity. Noninvasive EEG source imaging using realistic geometric boundary element head modeling was then applied to image the sources of the pathological HF brain activity. Five medically intractable focal epilepsy patients were studied and the estimated sources were found to be concordant with the surgical resection or intracranial recordings of the patients. The present study demonstrates, for the first time, that source imaging from the scalp HF activity could help to localize the seizure onset zone and provide a novel noninvasive way of studying the epileptic brain in humans. This study also indicates the potential application of studying HF activity in the presurgical planning of medically intractable epilepsy patients.

A reconstruction algorithm of magnetoacoustic tomography with magnetic induction for an acoustically inhomogeneous tissue

Magnetoacoustic tomography with magnetic induction (MAT-MI) is a noninvasive electrical conductivity imaging approach that measures ultrasound wave induced by magnetic stimulation, for reconstructing the distribution of electrical impedance in a biological tissue. Existing reconstruction algorithms for MAT-MI are based on the assumption that the acoustic properties in the tissue are homogeneous. However, the tissue in most parts of human body has heterogeneous acoustic properties, which leads to potential distortion and blurring of small buried objects in the impedance images. In this study, we proposed a new algorithm for MAT-MI to image the impedance distribution in tissues with inhomogeneous acoustic speed distributions. With a computer head model constructed from MR images of a human subject, a series of numerical simulation experiments were conducted. The present results indicate that the inhomogeneous acoustic properties of tissues in terms of speed variation can be incorporated in MAT-MI imaging.