Foliar fungi and plant diversity drive ecosystem carbon fluxes in experimental prairies

Towards an integrative mechanistic framework for biodiversity-consumer relationships

Terrestrial plant diversity plays a pivotal role in influencing the abundance, diversity, and impacts of herbivores and pathogens (collectively, plant consumers). However, it is unclear whether the relationships between biodiversity and herbivory reflect the same underlying ecological mechanisms as the relationships between biodiversity and disease. This uncertainty results in part from decades of independent, siloed research on each consumer group. We propose that, across herbivores and pathogens, plant diversity-consumer relationships arise from five fundamental factors: (1) density of a focal plant, (2) total plant biomass, (3) plant neighborhood quality, (4) resource diversity, and (5) structural complexity. By matching established hypotheses to these five fundamental factors, we highlight opportunities for growth in the rapidly developing field of plant-consumer interactions.

Temperature-dependent variations in under-canopy herbaceous foliar diseases following shrub encroachment in grasslands

Shrub encroachment into grasslands poses a global concern, impacting species biodiversity and ecosystem functioning. Yet, the effect of shrub encroachment on herbaceous diseases and the dependence of that effect on climatic factors remain ambiguous. This study spans over 4,000 km, examining significant variability in temperature and precipitation. Our findings reveal that herbaceous plant species richness diminishes the pathogen load of foliar fungal diseases of herbaceous plants in both shrub and grassland patches. Temperature emerges as the primary driver of variations in herbaceous biomass and pathogen load within herbaceous plant communities. Disparities in herbaceous biomass between shrub and grassland patches elucidate changes in pathogen load. In colder regions, shrub encroachment diminishes herbaceous biomass and pathogen load. Conversely, in warmer regions, shrubs either do not reduce or even amplify pathogen load. These discoveries underscore the necessity for adaptive management strategies tailored to specific shrub encroachment scenarios.

Diversity loss and light limitation threaten the sustainability of ecosystem productivity gains under nitrogen enrichment

Plant photosynthesis significantly regulates atmospheric CO₂ but is often limited by nitrogen (N) availability. While N deposition could alleviate this limitation and enhance gross ecosystem productivity (GEP), its long-term effects are uncertain due to potential negative impacts like biodiversity loss and soil acidification. Yet, many long-term N addition experiments emphasize community biomass over gross GEP. Here, we conducted a six-year N addition experiment in an alpine meadow, frequently monitoring GEP, community structure, aboveground net primary productivity (ANPP)and plant traits. We found that N addition significantly enhanced GEP in the first three years, but during 4-6 years this effect disappeared. We further disentangled the mechanisms affecting GEP into biomass-based and non-biomass-based processes. The latter is expressed as biomass-specific GEP, defined as GEP per unit biomass. Differing with GEP, biomass-specific GEP provides a metric of carbon assimilation efficiency normalized to biomass. Unlike previous studies, we found that it was not ANPP, but specific GEP that determined the loss of the short-term N effect. ANPP showed a consistent increase under N addition, whereas specific GEP decreased in the last three years. This specific GEP reduction was primarily regulated by biodiversity loss and increased light limitation under N addition. Overall, our findings suggest that short-term benefits of N deposition on GEP are not sustained in long term, highlighting the need to explore the non-biomass-based mechanisms to better predict ecosystem responses to prolonged N enrichment.

Plant community richness and foliar fungicides impact soil Streptomyces inhibition, resistance, and resource use phenotypes

Plants serve as critical links between above- and below-ground microbial communitites, both influencing and being influenced by microbes in these two realms. Below-ground microbial communities are expected to respond to soil resource environments, which are mediated by the roots of plants that can, in turn, be influenced by the above-ground community of foliar endophytes. For instance, diverse plant communities deposit more, and more diverse, nutrients into the soil, and this deposition is often increased when foliar pathogens are removed. Differences in soil resources can alter soil microbial composition and phenotypes, including inhibitory capacity, resource use, and antibiotic resistance. In this work, we consider plots differing in plant richness and application of foliar fungicide, evaluating consequences on soil resource levels and root-associated Streptomyces phenotypes. Soil carbon, nitrogen, phosphorus, potassium, and organic matter were greater in samples from polyculture than monoculture, yet this increase was surprisingly offset when foliar fungal communities were disrupted. We find that Streptomyces phenotypes varied more between richness plots-with the Streptomyces from polyculture showing lower inhibitory capacity, altered resource-use profiles, and greater antibiotic resistance-than between subplots with/without foliar fungicide. Where foliar fungicide affected phenotypes, it did so differently in polyculture than in monoculture, for instance decreasing niche width and overlap in monoculture while increasing them in polyculture. No differences in phenotype were correlated with soil nutrient levels, suggesting the need for further research looking more closely at soil resource diversity and particular compounds that were found to differ between treatments.

The effect of diversity on disease reverses from dilution to amplification in a 22-year biodiversity × N × CO2 experiment

Plant disease often increases with N, decreases with CO2, and increases as biodiversity is lost (i.e., the dilution effect). Additionally, all these factors can indirectly alter disease by changing host biomass and hence density-dependent disease transmission. Yet over long periods of time as communities undergo compositional changes, these biomass-mediated pathways might fade, intensify, or even reverse in direction. Using a field experiment that has manipulated N, CO2, and species richness for over 20 years, we compared severity of a specialist rust fungus (Puccinia andropogonis) on its grass host (Andropogon gerardii) shortly after the experiment began (1999) and twenty years later (2019). Between these two sampling periods, two decades apart, we found that disease severity consistently increased with N and decreased with CO2. However, the relationship between diversity and disease reversed from a dilution effect in 1999 (more severe disease in monocultures) to an amplification effect in 2019 (more severe disease in mixtures). The best explanation for this reversal centered on host density (i.e., aboveground biomass), which was initially highest in monoculture, but became highest in mixtures two decades later. Thus, the diversity-disease pattern reversed, but disease consistently increased with host biomass. These results highlight the consistency of N and CO2 as drivers of plant disease in the Anthropocene and emphasize the critical role of host biomass-despite potentially variable effects of diversity-for relationships between biodiversity and disease.

Plant community diversity alters the response of ecosystem multifunctionality to multiple global change factors

Biodiversity is considered important to the mitigation of global change impacts on ecosystem multifunctionality in terrestrial ecosystems. However, potential mechanisms through which biodiversity maintains ecosystem multifunctionality under global change remain unclear. We grew 132 plant communities with two levels of plant diversity, crossed with treatments based on 10 global change factors (nitrogen deposition, soil salinity, drought, plant invasion, simulated grazing, oil pollution, plastics pollution, antibiotics pollution, heavy metal pollution, and pesticide pollution). All global change factors negatively impacted ecosystem multifunctionality, but negative impacts were stronger in high compared with low diversity plant communities. We explored potential mechanisms for this unexpected result, finding that the inhibition of selection effects (i.e., selection for plant species associated with high ecosystem functioning) contributed to sensitivity of ecosystem multifunctionality to global change. Specifically, global change factors decreased the abundance of novel functional plants (i.e., legumes) in high but not low diversity plant communities. The negative impacts of global change on ecosystem multifunctionality were also mediated by increased relative abundance of fungal plant pathogens (identified from metabarcoding of soil samples) and their negative relationship with the abundance of novel functional plants. Taken together, our experiment highlights the importance of protecting high diversity plant communities and legumes, and managing fungal pathogens, to the maintenance of ecosystem multifunctionality in the face of complex global change.

Fungal pathogens increase community temporal stability through species asynchrony regardless of nutrient fertilization

Natural enemies and their interaction with host nutrient availability influence plant population dynamics, community structure, and ecosystem functions. However, the way in which these factors influence patterns of community stability, as well as the direct and indirect processes underlying that stability, remains unclear. Here, we investigated the separate and interactive roles of fungal/oomycete pathogens and nutrient fertilization on the temporal stability of community biomass and the potential mechanisms using a factorial experiment in an alpine meadow. We found that fungal pathogen exclusion reduced community temporal stability mainly through decreasing species asynchrony, while fertilization tended to reduce community temporal stability by decreasing species stability. However, there was no interaction between pathogen exclusion and nutrient fertilization. These effects were largely due to the direct effects of the treatments on plant biomass and not due to indirect effects mediated through plant diversity. Our findings highlight the need for a multitrophic perspective in field studies examining ecosystem stability.

Native plants change the endophyte assembly and growth of an invasive plant in response to climatic factors

Climate change, microbial endophytes, and local plants can affect the establishment and expansion of invasive species, yet no study has been performed to assess these interactions. Using a growth chamber, we integrated the belowground (rhizosphere soils) and aboveground (mixture of mature leaf and leaf litter) microbiota into an experimental framework to evaluate the impacts of four native plants acting as microbial inoculation sources on endophyte assembly and growth of the invasive plant Ageratina adenophora in response to drought stress and temperature change. We found that fungal and bacterial enrichment in the leaves and roots of A. adenophora exhibited distinct patterns in response to climatic factors. Many fungi were enriched in roots in response to high temperature and drought stress; in contrast, many bacteria were enriched in leaves in response to low temperature and drought stress. Inoculation of microbiota from phylogenetically close native plant species (i.e., Asteraceae Artemisia atrovirens) causes the recipient plant A. adenophora (Asteraceae) to enrich dominant microbial species from inoculation sources, which commonly results in a lower dissimilar endophytic microbiota and thus produces more negative growth effects when compared to non-Asteraceae inoculations. Drought, microbial inoculation source, and temperature directly impacted the growth of A. adenophora. Both drought and inoculation also indirectly impacted the growth of A. adenophora by changing the root endophytic fungal assembly. Our data indicate that native plant identity can greatly impact the endophyte assembly and host growth of invasive plants, which is regulated by drought and temperature.IMPORTANCEThere has been increasing interest in the interactions between global changes and plant invasions; however, it remains to quantify the role of microbial endophytes in plant invasion with a consideration of their variation in the root vs leaf of hosts, as well as the linkages between microbial inoculations, such as native plant species, and climatic factors, such as temperature and drought. Our study found that local plants acting as microbial inoculants can impact fungal and bacterial enrichment in the leaves and roots of the invasive plant Ageratina adenophora and thus produce distinct growth effects in response to climatic factors; endophyte-mediated invasion of A. adenophora is expected to operate more effectively under favorable moisture. Our study is important for understanding the interactions between climate change, microbial endophytes, and local plant identity in the establishment and expansion of invasive species.

Water causes divergent responses of specific carbon sink to long-term grazing in a desert grassland

Heavy grazing generally reduces grassland biomass, further decreasing its carbon sink. Grassland carbon sink is determined by both plant biomass and carbon sink per unit biomass (specific carbon sink). This specific carbon sink could reflect grassland adaptative response, because plants generally tend to adaptively enhance the functioning of their remaining biomass after grazing (i.e. higher leaf nitrogen content). Though we know well about the regulation of grassland biomass on carbon sink, little attention is paid to the role of specific carbon sink. Thus, we conducted a 14-year grazing experiment in a desert grassland. Ecosystem carbon fluxes, including net ecosystem CO₂ exchange (NEE), gross ecosystem productivity (GEP) and ecosystem respiration (ER), were measured frequently during five consecutive growing seasons with contrasting precipitation events. We found that heavy grazing reduced NEE more in drier (-94.0 %) than wetter (-33.9 %) years. However, grazing did not reduce community biomass much more in drier (-70.4 %) than wetter years (-66.0 %). These meant a positive response of specific NEE (NEE per unit biomass) to grazing in wetter years. This positive response of specific NEE was mainly caused by a higher biomass ratio of other species versus perennial grasses with greater leaf nitrogen content and specific leaf area in wetter years. In addition, we also detected a shift of grazing effects on specific NEE from positive in wetter years to negative in drier years. Overall, this study is among the first to reveal the adaptive response of grassland specific carbon sink to experimental grazing in plant trait view. The stimulation response of specific carbon sink can partially compensate for the loss of grassland carbon storage under grazing. These new findings highlight the role of grassland adaptive response in decelerating climate warming.

Realistic rates of nitrogen addition increase carbon flux rates but do not change soil carbon stocks in a temperate grassland

Changes in the biosphere carbon (C) sink are of utmost importance given rising atmospheric CO₂ levels. Concurrent global changes, such as increasing nitrogen (N) deposition, are affecting how much C can be stored in terrestrial ecosystems. Understanding the extent of these impacts will help in predicting the fate of the biosphere C sink. However, most N addition experiments add N in rates that greatly exceed ambient rates of N deposition, making inference from current knowledge difficult. Here, we leveraged data from a 13-year N addition gradient experiment with addition rates spanning realistic rates of N deposition (0, 1, 5, and 10 g N m^-2  year^-1 ) to assess the rates of N addition at which C uptake and storage were stimulated in a temperate grassland. Very low rates of N addition stimulated gross primary productivity and plant biomass, but also stimulated ecosystem respiration such that there was no net change in C uptake or storage. Furthermore, we found consistent, nonlinear relationships between N addition rate and plant responses such that intermediate rates of N addition induced the greatest ecosystem responses. Soil pH and microbial biomass and respiration all declined with increasing N addition indicating that negative consequences of N addition have direct effects on belowground processes, which could then affect whole ecosystem C uptake and storage. Our work demonstrates that experiments that add large amounts of N may be underestimating the effect of low to intermediate rates of N deposition on grassland C cycling. Furthermore, we show that plant biomass does not reliably indicate rates of C uptake or soil C storage, and that measuring rates of C loss (i.e., ecosystem and soil respiration) in conjunction with rates of C uptake and C pools are crucial for accurately understanding grassland C storage.

Drought and warming alter gross primary production allocation and reduce productivity in a widespread pasture grass

Carbon allocation determines plant growth, fitness and reproductive success. However, climate warming and drought impacts on carbon allocation patterns in grasses are not well known, particularly following grazing or clipping. A widespread C₃ pasture grass, Festuca arundinacea, was grown at 26 and 30°C in controlled environment chambers and subjected to drought (65% reduction relative to well-watered controls). Leaf, root and whole-plant carbon fluxes were measured and linked to growth before and after clipping. Both drought and warming reduced gross primary production and plant biomass. Drought reduced net leaf photosynthesis but increased the leaf respiratory fraction of assimilated carbon. Warming increased root respiration but did not affect either net leaf photosynthesis or leaf respiration. There was no evidence of thermal acclimation. Moreover, root respiratory carbon loss was amplified in the combined drought and warming treatment and, in addition to a negative carbon balance aboveground, explained an enhanced reduction in plant biomass. Plant regrowth following clipping was strongly suppressed by drought, reflecting increased tiller mortality and exacerbated respiratory carbon loss. These findings emphasize the importance of considering carbon allocation patterns in response to grazing or clipping and interactions with climatic factors for sustainable pasture production in a future climate.

Seasonal shifts from plant diversity to consumer control of grassland productivity

Plant biodiversity and consumers are important mediators of energy and carbon fluxes in grasslands, but their effects on within‐season variation of plant biomass production are poorly understood. Here we measure variation in control of plant biomass by consumers and plant diversity throughout the growing season and their impact on plant biomass phenology. To do this, we analysed 5 years of biweekly biomass measures (NDVI) in an experiment manipulating plant species richness and three consumer groups (foliar fungi, soil fungi and arthropods). Positive plant diversity effects on biomass were greatest early in the growing season, whereas the foliar fungicide and insecticide treatments increased biomass most late in the season. Additionally, diverse plots and plots containing foliar fungi reached maximum biomass almost a month earlier than monocultures and plots treated with foliar fungicide, demonstrating the dynamic and interactive roles that biodiversity and consumers play in regulating biomass production through the growing season.