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Rojas‐Cortés ÁP, Gasca‐Pineda J, González‐Rodríguez A, Ibarra‐Manríquez G. Genomic diversity and structure of a Neotropical microendemic fig tree. Ecol Evol 2024; 14:e11178. [PMID: 38505177 PMCID: PMC10948372 DOI: 10.1002/ece3.11178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2023] [Revised: 03/06/2024] [Accepted: 03/08/2024] [Indexed: 03/21/2024] Open
Abstract
Genetic diversity is a key component of evolution, and unraveling factors that promote genetic differentiation in space and time is a central question in evolutionary biology. One of the most diverse and ecologically important tree genera in tropical forests worldwide is Ficus (Moraceae). It has been suggested that, given the great dispersal capacity of pollinating fig wasps (Chalcidoidea; Agaonidae), the spatial genetic structure, particularly in monoecious fig species, should be weak. However, no studies have addressed the factors that determine the genetic structure of Ficus species in regions of high geological, geographic, and climatic complexity, such as the Mexican Transition Zone. Using nuclear single nucleotide polymorphisms (5311 SNPs) derived from low-coverage whole genomes and 17 populations, we analyzed the population genomics of Ficus pringlei to characterize neutral and adaptive genetic variation and structure and its association with geographic barriers such as the Trans-Mexican Volcanic Belt, environmental heterogeneity, and wind connectivity. From genomic data of 71 individuals, high genetic diversity, and the identification of three genomic lineages were recorded (North, South, and Churumuco). The results suggest that genetic variation is primarily determined by climatic heterogeneity. Ficus pringlei populations from the north and south of the Trans-Mexican Volcanic Belt also exhibited minimal genetic differentiation (F ST = 0.021), indicating that this mountain range may not act as an insurmountable barrier to gene flow. Wind connectivity is also highlighted in structuring putative adaptive genetic variation, underscoring the intricate complexity of the various factors influencing genetic variation in the species. This study provides information on the possible mechanisms underlying the genetic variation of endemic species of the tropical dry forest of Western Mexico, such as F. pringlei.
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Affiliation(s)
- Ángela P. Rojas‐Cortés
- Instituto de Investigaciones en Ecosistemas y SustentabilidadUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
- Posgrado en Ciencias BiológicasUniversidad Nacional Autónoma de México, Ciudad UniversitariaCiudad de MéxicoMexico
| | - Jaime Gasca‐Pineda
- Departamento de Ecología EvolutivaInstituto de Ecología, Universidad Nacional Autónoma de México, Circuito exterior s/n anexo al Jardín Botánico, Ciudad UniversitariaCiudad de MéxicoMexico
| | - Antonio González‐Rodríguez
- Instituto de Investigaciones en Ecosistemas y SustentabilidadUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
| | - Guillermo Ibarra‐Manríquez
- Instituto de Investigaciones en Ecosistemas y SustentabilidadUniversidad Nacional Autónoma de MéxicoMoreliaMichoacánMexico
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Oldenbeuving A, Gómez‐Zúniga A, Florez‐Buitrago X, Gutiérrez‐Zuluaga AM, Machado CA, Van Dooren TJM, van Alphen J, Biesmeijer JC, Herre EA. Field sampling of fig pollinator wasps across host species and host developmental phase: Implications for host recognition and specificity. Ecol Evol 2023; 13:e10501. [PMID: 37706164 PMCID: PMC10495548 DOI: 10.1002/ece3.10501] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2023] [Revised: 07/28/2023] [Accepted: 08/24/2023] [Indexed: 09/15/2023] Open
Abstract
Previous genetic studies of pollinator wasps associated with a community of strangler figs (Ficus subgenus Urostigma, section Americana) in Central Panama suggest that the wasp species exhibit a range in host specificity across their host figs. To better understand factors that might contribute to this observed range of specificity, we used sticky traps to capture fig-pollinating wasp individuals at 13 Ficus species, sampling at different phases of the reproductive cycle of the host figs (e.g., trees with receptive inflorescences, or vegetative trees, bearing only leaves). We also sampled at other tree species, using them as non-Ficus controls. DNA barcoding allowed us to identify the wasps to species and therefore assign their presence and abundance to host fig species and the developmental phase of that individual tree. We found: (1) wasps were only very rarely captured at non-Ficus trees; (2) nonetheless, pollinators were captured often at vegetative individuals of some host species; (3) overwhelmingly, wasp individuals were captured at receptive host fig trees representing the fig species from which they usually emerge. Our results indicate that wasp occurrence is not random either spatially or temporally within the forest and across these hosts, and that wasp specificity is generally high, both at receptive and vegetative host trees. Therefore, in addition to studies that show chemicals produced by receptive fig inflorescences attract pollinator wasps, we suggest that other cues (e.g., chemicals produced by the leaves) can also play a role in host recognition. We discuss our results in the context of recent findings on the role of host shifts in diversification processes in the Ficus genus.
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Affiliation(s)
- Aafke Oldenbeuving
- Naturalis Biodiversity CenterLeidenThe Netherlands
- Institute of Environmental Sciences (CML)Leiden UniversityLeidenThe Netherlands
| | | | | | | | | | - Tom J. M. Van Dooren
- Naturalis Biodiversity CenterLeidenThe Netherlands
- CNRS, Institute of Ecology and Environmental SciencesParisFrance
| | | | - Jacobus C. Biesmeijer
- Naturalis Biodiversity CenterLeidenThe Netherlands
- Institute of Environmental Sciences (CML)Leiden UniversityLeidenThe Netherlands
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3
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Deng X, Liao Y, Wong D, Yu H. The genetic structuring in pollinating wasps of Ficus hispida in continental Asia. Ecol Evol 2023; 13:e10518. [PMID: 37745788 PMCID: PMC10511832 DOI: 10.1002/ece3.10518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2022] [Revised: 06/26/2023] [Accepted: 08/29/2023] [Indexed: 09/26/2023] Open
Abstract
The interaction between figs and fig wasps provides a striking example of obligate brood site pollination mutualism. Monoecious figs, constituting independent radiations in each tropical biome, are present in significant proportions worldwide, but in continental Asia, dioecious figs have diverged into various niches, making the region's assemblage remarkably diverse. However, the reproductive success of figs and fig wasps largely depends on the fig wasp dispersal process. Monoecious fig pollinators in continental Asian tropical rain forests exhibit high gene flow of the plant, while many dioecious fig pollinators have a more restricted gene flow. However, there are limited studies on the genetic structure of dioecious Ficus pollinators that pollinate figs with intermediate gene flow. Here, we used molecular methods to investigate the genetic structure of pollinating wasps of the widely distributed dioecious Ficus hispida in China and Southeast Asia. Sequence data from two gene regions were used: the mitochondrial protein-coding gene cytochrome c oxidase subunit I (COI) and the nuclear 28S genes. Both molecular and morphological results support two fig wasp species at our sampling sites. Our findings suggest that for widely sympatric Ficus species in continental Asia, monoecious figs presenting long gene glow have the fewest fig wasp species, followed by dioecious figs presenting intermediate gene flow, and dioecious figs presenting local gene flow have the most fig wasp species.
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Affiliation(s)
- Xiaoxia Deng
- Key Laboratory of Plant Resource Conservation and Sustainable UtilizationSouth China Botanical Garden, CASGuangzhouChina
- South China National Botanical GardenGuangzhouChina
- CEFECNRS, Univ Montpellier, EPHE, IRDMontpellierFrance
| | - Yaolin Liao
- Key Laboratory of Plant Resource Conservation and Sustainable UtilizationSouth China Botanical Garden, CASGuangzhouChina
- South China National Botanical GardenGuangzhouChina
| | - Da‐Mien Wong
- Key Laboratory of Plant Resource Conservation and Sustainable UtilizationSouth China Botanical Garden, CASGuangzhouChina
- South China National Botanical GardenGuangzhouChina
| | - Hui Yu
- Key Laboratory of Plant Resource Conservation and Sustainable UtilizationSouth China Botanical Garden, CASGuangzhouChina
- South China National Botanical GardenGuangzhouChina
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Deng X, Liao Y, Liu W, Yu H. The coexistence of two related fig wasp species sharing the same host fig species across a broad geographical area. ACTA OECOLOGICA 2023. [DOI: 10.1016/j.actao.2022.103885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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Wang AY, Peng YQ, Cook JM, Yang DR, Zhang DY, Liao WJ. Host insect specificity and interspecific competition drive parasitoid diversification in a plant-insect community. Ecology 2023:e4062. [PMID: 37186391 DOI: 10.1002/ecy.4062] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 10/14/2022] [Revised: 01/31/2023] [Accepted: 04/11/2023] [Indexed: 05/17/2023]
Abstract
Ecological interactions among plants, insect herbivores and parasitoids are pervasive in nature and play important roles in community assembling, but the codiversification of tri-trophic interactions has received less attention. Here we compare pairwise codiversification patterns between a set of 22 fig species, their herbivorous pollinating and galling wasps, and their parasitoids. The parasitoid phylogeny showed significant congruence and more cospeciation events with host insects phylogeny than with host plants. These results suggest that parasitoid phylogeny and speciation is more closely related to their host insects than to their host plants. The pollinating wasps hosted more parasitoid species than gallers and indicated a more intense interspecific competition among parasitoids associated with pollinators. Closer matching and fewer evolutionary host shifts were found between parasitoids and galler hosts than between parasitoids and pollinator hosts. These results suggest that interspecific competition among parasitoids, rather than resource availability of host wasps, is the main driver of the codiversification pattern in this community. Therefore, our study highlights the important role of interspecific competition among high trophic level insects in plant-insect tri-trophic community assembling. This article is protected by copyright. All rights reserved.
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Affiliation(s)
- Ai-Ying Wang
- State Key Laboratory of Earth Surface Processes and Resource Ecology & Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Beijing Normal University, Beijing, China
| | - Yan-Qiong Peng
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, China
| | - James M Cook
- Hawkesbury Institute for the Environment, Western Sydney University, Locked Bag 1797, Penrith, NSW, Australia
| | - Da-Rong Yang
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Kunming, China
| | - Da-Yong Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology & Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Beijing Normal University, Beijing, China
| | - Wan-Jin Liao
- State Key Laboratory of Earth Surface Processes and Resource Ecology & Ministry of Education Key Laboratory for Biodiversity Science and Ecological Engineering, Beijing Normal University, Beijing, China
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Satler JD, Herre EA, Heath TA, Machado CA, Gómez Zúñiga A, Jandér KC, Eaton DAR, Nason JD. Pollinator and host sharing lead to hybridization and introgression in Panamanian free-standing figs, but not in their pollinator wasps. Ecol Evol 2023; 13:e9673. [PMID: 36699574 PMCID: PMC9848820 DOI: 10.1002/ece3.9673] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Revised: 11/20/2022] [Accepted: 12/02/2022] [Indexed: 01/20/2023] Open
Abstract
Obligate pollination mutualisms, in which plant and pollinator lineages depend on each other for reproduction, often exhibit high levels of species specificity. However, cases in which two or more pollinator species share a single host species (host sharing), or two or more host species share a single pollinator species (pollinator sharing), are known to occur in current ecological time. Further, evidence for host switching in evolutionary time is increasingly being recognized in these systems. The degree to which departures from strict specificity differentially affect the potential for hybridization and introgression in the associated host or pollinator is unclear. We addressed this question using genome-wide sequence data from five sympatric Panamanian free-standing fig species (Ficus subgenus Pharmacosycea, section Pharmacosycea) and their six associated fig-pollinator wasp species (Tetrapus). Two of the five fig species, F. glabrata and F. maxima, were found to regularly share pollinators. In these species, ongoing hybridization was demonstrated by the detection of several first-generation (F1) hybrid individuals, and historical introgression was indicated by phylogenetic network analysis. By contrast, although two of the pollinator species regularly share hosts, all six species were genetically distinct and deeply divergent, with no evidence for either hybridization or introgression. This pattern is consistent with results from other obligate pollination mutualisms, suggesting that, in contrast to their host plants, pollinators appear to be reproductively isolated, even when different species of pollinators mate in shared hosts.
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Affiliation(s)
- Jordan D. Satler
- Department of Ecology, Evolution, and Organismal BiologyIowa State UniversityAmesIowaUSA
| | | | - Tracy A. Heath
- Department of Ecology, Evolution, and Organismal BiologyIowa State UniversityAmesIowaUSA
| | | | | | - K. Charlotte Jandér
- Department of Ecology and Genetics, Plant Ecology and EvolutionUppsala UniversityUppsalaSweden
| | - Deren A. R. Eaton
- Department of Ecology, Evolution and Environmental BiologyColumbia UniversityNew YorkNew YorkUSA
| | - John D. Nason
- Department of Ecology, Evolution, and Organismal BiologyIowa State UniversityAmesIowaUSA
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Xie H, Yang P, Xia Y, Kjellberg F, Darwell CT, Li ZB. Maintenance of specificity in sympatric host-specific fig/wasp pollination mutualisms. PeerJ 2022; 10:e13897. [PMID: 35975234 PMCID: PMC9375967 DOI: 10.7717/peerj.13897] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2022] [Accepted: 07/22/2022] [Indexed: 01/19/2023] Open
Abstract
Background Fig/wasp pollination mutualisms are extreme examples of species-specific plant-insect symbioses, but incomplete specificity occurs, with potentially important evolutionary consequences. Why pollinators enter alternative hosts, and the fates of pollinators and the figs they enter, are unknown. Methods We studied the pollinating fig wasp, Ceratosolen emarginatus, which concurrently interacts with its typical host Ficus auriculata and the locally sympatric alternative host F. hainanensis, recording frequencies of the wasp in figs of the alternative hosts. We measured ovipositor lengths of pollinators and style lengths in female and male figs in the two host species. Volatile organic compounds (VOCs) emitted by receptive figs of each species were identified using GC-MS. We tested the attraction of wasps to floral scents in choice experiments, and detected electrophysiologically active compounds by GC-EAD. We introduced C. emarginatus foundresses into figs of both species to reveal the consequences of entry into the alternative host. Results C. emarginatus entered a low proportion of figs of the alternative host, and produced offspring in a small proportion of them. Despite differences in the VOC profiles of the two fig species, they included shared semiochemicals. Although C. emarginatus females prefer receptive figs of F. auriculata, they are also attracted to those of F. hainanensis. C. emarginatus that entered male figs of F. hainanensis produced offspring, as their ovipositors were long enough to reach the bottom of the style; however, broods were larger and offspring smaller than in the typical host. Female figs of F. hainanensis failed to produce seeds when visited by C. emarginatus. These findings advance our current understanding of how these species-specific mutualisms usually remain stable and the conditions that allow their diversification.
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Affiliation(s)
- Hua Xie
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Southwest Forestry University, Kunming, Yunnan, China
| | - Pei Yang
- Yunnan University of Chinese Medicine, Kunming, Yunnan, China
| | - Yan Xia
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Southwest Forestry University, Kunming, Yunnan, China
| | - Finn Kjellberg
- CEFE, CNRS, Université de Montpellier, EPHE, IRD, Montpellier, France
| | - Clive T. Darwell
- Biodiversity and Biocomplexity Unit, Okinawa Institute of Science and Technology Graduate University, Okinawa, Japan
| | - Zong-Bo Li
- Key Laboratory for Forest Resources Conservation and Utilization in the Southwest Mountains of China, Southwest Forestry University, Kunming, Yunnan, China
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Pollinator sharing, copollination, and speciation by host shifting among six closely related dioecious fig species. Commun Biol 2022; 5:284. [PMID: 35396571 PMCID: PMC8993897 DOI: 10.1038/s42003-022-03223-0] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2021] [Accepted: 03/04/2022] [Indexed: 12/11/2022] Open
Abstract
The obligate pollination mutualism between figs (Ficus, Moraceae) and pollinator wasps (Agaonidae, Hymenoptera) is a classic example of cospeciation. However, examples of phylogenetic incongruencies between figs and their pollinators suggest that pollinators may speciate by host shifting. To investigate the mechanism of speciation by host shifting, we examined the phylogenetic relationships and population genetic structures of six closely related fig species and their pollinators from southern China and Taiwan-Ryukyu islands using various molecular markers. The results revealed 1) an extraordinary case of pollinator sharing, in which five distinct fig species share a single pollinator species in southern China; 2) two types of copollination, namely, sympatric copollination by pollinator duplication or pollinator migration, and allopatric copollination by host migration and new pollinator acquisition; 3) fig species from southern China have colonized Taiwan repeatedly and one of these events has been followed by host shifting, reestablishment of host specificity, and pollinator speciation, in order. Based on our results, we propose a model for pollinator speciation by host shifting in which the reestablishment of host-specificity plays a central role in the speciation process. These findings provide important insights into understanding the mechanisms underlying pollinator speciation and host specificity in obligate pollination mutualism. Phylogenetic and population genetic analyses reveal mechanisms of pollinator sharing, copollination and speciation by host-shift in fig-wasp mutualism.
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Yu H, Zhang Z, Liu L, Cheng Y, Deng X, Segar ST, Compton SG. Asymmetric sharing of pollinator fig wasps between two sympatric dioecious fig trees: a reflection of supply and demand or differences in the size of their figs? BOTANICAL STUDIES 2022; 63:7. [PMID: 35316420 PMCID: PMC8941105 DOI: 10.1186/s40529-022-00338-9] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/04/2021] [Accepted: 03/03/2022] [Indexed: 06/14/2023]
Abstract
BACKGROUND Host specificity among pollinator fig wasps (Agaonidae) depends on host plant specific volatile cues, but fig wasps must also pass through a narrow physical barrier (the ostiole) if they are to pollinate and oviposit. Across South East Asia the dioecious shrub Ficus hirta is associated with at least ten pollinator species allied to Valisia javana. Ficus triloba has a single recorded pollinator, Valisia esquirolianae. Receptive figs of F. hirta are usually much smaller than those of F. triloba, but at a mainland site where F. hirta has atypically large figs we identified both V. esquirolianae and V. javana from both Ficus species using COI and ITS2 sequencing. To investigate whether this host overlap was exceptional we reared fig wasps from the two trees elsewhere and recorded features that may facilitate host transfer between them, including attractant volatiles, reproductive phenology and the sizes of their figs and fig wasps. RESULTS The two Ficus species were found to support both Valisia species at several of the sites, suggesting that the differences we detected in volatile profiles, ostiole sizes and pollinator head sizes are not strict barriers to host sharing. Valisia javana colonised F. triloba more frequently than V. esquirolianae colonised F. hirta. CONCLUSIONS This asymmetric sharing of pollinators may reflect the relative abundance of the two species of fig wasps and differences in host reproductive phenology. Asynchronous flowering of individual F. hirta may favor local retention of pollinators, in contrast to the tree-wide synchrony of F. triloba figs, which can generate local shortages of V. esquirolianae. If the pollinator sharing by male figs of F. triloba and F. hirta also occurs in female figs then this could result in gene flow between them.
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Affiliation(s)
- Hui Yu
- School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China.
- Guangdong Provincial Key Laboratory of Applied Botany and Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China.
- South China Botanical Garden, The Chinese Academy of Sciences, Xingke Road 723, Tianhe district, Guangzhou, 510650, China.
| | - Zhiwei Zhang
- School of Life Sciences, Qufu Normal University, Qufu, 273165, Shandong, China
| | - Lu Liu
- Guangdong Provincial Key Laboratory of Applied Botany and Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Yufen Cheng
- Guangdong Provincial Key Laboratory of Applied Botany and Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Xiaoxia Deng
- Guangdong Provincial Key Laboratory of Applied Botany and Key Laboratory of Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Simon T Segar
- Department of Crop and Environment Sciences, Harper Adams University, Newport, TF10 8NB, UK
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Satler JD, Herre EA, Heath TA, Machado CA, Zúñiga AG, Nason JD. Genome-wide sequence data show no evidence of hybridization and introgression among pollinator wasps associated with a community of Panamanian strangler figs. Mol Ecol 2022; 31:2106-2123. [PMID: 35090071 PMCID: PMC9545327 DOI: 10.1111/mec.16373] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/25/2020] [Revised: 01/19/2022] [Accepted: 01/20/2022] [Indexed: 11/28/2022]
Abstract
The specificity of pollinator host choice influences opportunities for reproductive isolation in their host plants. Similarly, host plants can influence opportunities for reproductive isolation in their pollinators. For example, in the fig and fig wasp mutualism, offspring of fig pollinator wasps mate inside the inflorescence that the mothers pollinate. Although often host specific, multiple fig pollinator species are sometimes associated with the same fig species, potentially enabling hybridization between wasp species. Here, we study the 19 pollinator species (Pegoscapus spp.) associated with an entire community of 16 Panamanian strangler fig species (Ficus subgenus Urostigma, section Americanae) to determine whether the previously documented history of pollinator host switching and current host sharing predicts genetic admixture among the pollinator species, as has been observed in their host figs. Specifically, we use genome‐wide ultraconserved element (UCE) loci to estimate phylogenetic relationships and test for hybridization and introgression among the pollinator species. In all cases, we recover well‐delimited pollinator species that contain high interspecific divergence. Even among pairs of pollinator species that currently reproduce within syconia of shared host fig species, we found no evidence of hybridization or introgression. This is in contrast to their host figs, where hybridization and introgression have been detected within this community, and more generally, within figs worldwide. Consistent with general patterns recovered among other obligate pollination mutualisms (e.g. yucca moths and yuccas), our results suggest that while hybridization and introgression are processes operating within the host plants, these processes are relatively unimportant within their associated insect pollinators.
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Affiliation(s)
- Jordan D Satler
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA
| | - Edward Allen Herre
- Smithsonian Tropical Research Institute, Unit 9100 Box 0948, DPO AA 34002-9998, USA
| | - Tracy A Heath
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA
| | - Carlos A Machado
- Department of Biology, University of Maryland, College Park, Maryland, USA, 20742
| | | | - John D Nason
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011, USA
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Xu X, Wang BS, Yu H. Intraspecies Genomic Divergence of a Fig Wasp Species Is Due to Geographical Barrier and Adaptation. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.764828] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022] Open
Abstract
Understanding how intraspecies divergence results in speciation has great importance for our knowledge of evolutionary biology. Here we applied population genomics approaches to a fig wasp species (Valisia javana complex sp 1) to reveal its intraspecies differentiation and the underlying evolutionary dynamics. With re-sequencing data, we prove the Hainan Island population (DA) of sp1 genetically differ from the continental ones, then reveal the differed divergence pattern. DA has reduced SNP diversity but a higher proportion of population-specific structural variations (SVs), implying a restricted gene exchange. Based on SNPs, 32 differentiated islands containing 204 genes were detected, along with 1,532 population-specific SVs of DA overlapping 4,141 genes. The gene ontology (GO) enrichment analysis performed on differentiated islands linked to three significant GO terms on a basic metabolism process, with most of the genes failing to enrich. In contrast, population-specific SVs contributed more to the adaptation than the SNPs by linking to 59 terms that are crucial for wasp speciation, such as host reorganization and development regulation. In addition, the generalized dissimilarity modeling confirms the importance of environment difference on the genetic divergence within sp1. Hence, we assume the genetic divergence between DA and the continent due to not only the strait as a geographic barrier, but also adaptation. We reconstruct the demographic history within sp1. DA shares a similar population history with the nearby continental population, suggesting an incomplete divergence. Summarily, our results reveal how geographic barriers and adaptation both influence the genetic divergence at population-level, thereby increasing our knowledge on the potential speciation of non-model organisms.
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12
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Yu H, Liao Y, Cheng Y, Jia Y, Compton SG. More examples of breakdown the 1:1 partner specificity between figs and fig wasps. BOTANICAL STUDIES 2021; 62:15. [PMID: 34626257 PMCID: PMC8502184 DOI: 10.1186/s40529-021-00323-8] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Accepted: 09/21/2021] [Indexed: 05/22/2023]
Abstract
BACKGROUND The obligate mutualism between fig trees (Ficus, Moraceae) and pollinating fig wasps (Agaonidae) is a model system for studying co-evolution due to its perceived extreme specificity, but recent studies have reported a number of examples of trees pollinated by more than one fig wasp or sharing pollinators with other trees. This will make the potential of pollen flow between species and hybridization more likely though only few fig hybrids in nature have been found. We reared pollinator fig wasps from figs of 13 Chinese fig tree species and established their identity using genetic methods in order to investigate the extent to which they were supporting more than one species of pollinator (co-pollinator). RESULTS Our results showed (1) pollinator sharing was frequent among closely-related dioecious species (where pollinator offspring and seeds develop on different trees); (2) that where two pollinator species were developing in figs of one host species there was usually one fig wasp with prominent rate than the other. An exception was F. triloba, where its two pollinators were equally abundant; (3) the extent of co-pollinator within one fig species is related to the dispersal ability of them which is stronger in dioecious figs, especially in small species. CONCLUSIONS Our results gave more examples to the breakdown of extreme specificity, which suggest that host expansion events where pollinators reproduce in figs other than those of their usual hosts are not uncommon among fig wasps associated with dioecious hosts. Because closely related trees typically have closely related pollinators that have a very similar appearance, the extent of pollinator-sharing has probably been underestimated. Any pollinators that enter female figs carrying heterospecific pollen could potentially generate hybrid seed, and the extent of hybridization and its significance may also have been underestimated.
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Affiliation(s)
- Hui Yu
- Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China.
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou, 511458, China.
- Centre for Plant Ecology, CAS Core Botanical Gardens, Guangzhou, China.
| | - Yaolin Liao
- Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Yufen Cheng
- Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China
| | - Yongxia Jia
- Plant Resources Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou, 510650, China
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13
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Chen L, Segar ST, Chantarasuwan B, Wong DM, Wang R, Chen X, Yu H. Adaptation of Fig Wasps (Agaodinae) to Their Host Revealed by Large-Scale Transcriptomic Data. INSECTS 2021; 12:insects12090815. [PMID: 34564255 PMCID: PMC8471397 DOI: 10.3390/insects12090815] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/01/2021] [Revised: 08/11/2021] [Accepted: 09/08/2021] [Indexed: 01/22/2023]
Abstract
Simple Summary Research on fig wasps has made a considerable contribution to the understanding of insect–plant interactions. However, the molecular mechanisms underlying fig wasp host specificity are poorly understood. This study reports on a relatively large-scale transcriptomic dataset of 25 fig wasp species. We outline potential genetic mechanisms underlying the specific host adaptation by investigating changes in a gene family, in evolutionary rates, and in genes under positive selection. The transcriptome datasets reported here (1) provide new insights into the evolutionary diversification and host specificity of fig wasps and (2) contribute to a growing dataset on fig wasp genomics. Abstract Figs and fig wasps are highly species-specific and comprise a model system for studying co-evolution and co-speciation. The evolutionary relationships and molecular adaptations of fig wasps to their fig hosts are poorly understood, and this is in part due to limited sequence data. Here, we present large-scale transcriptomic datasets of 25 fig wasp species with the aim of uncovering the genetic basis for host specificity. Our phylogenetic results support the monophyly of all genera associated with dioecious figs, and two genera associated with monoecious figs, Eupristina and Platyscapa, were revealed to be close relatives. We identified gene loss and gain, potentially rapidly evolving genes, and genes under positive selection. Potentially functional changes were documented and we hypothesize as to how these may determine host specificity. Overall, our study provides new insights into the evolutionary diversification of fig wasps and contributes to our understanding of adaptation in this group.
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Affiliation(s)
- Lianfu Chen
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou 510650, China; (L.C.); (D.-M.W.)
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
| | - Simon T. Segar
- Department of Crop and Environment Sciences, Harper Adams University, Newport, Shropshire TF10 8NB, UK;
| | - Bhanumas Chantarasuwan
- Thailand Natural History Museum, National Science Museum, PtthumThani 12120, Thailand; (B.C.); (R.W.)
| | - Da-Mien Wong
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou 510650, China; (L.C.); (D.-M.W.)
| | - Rong Wang
- Thailand Natural History Museum, National Science Museum, PtthumThani 12120, Thailand; (B.C.); (R.W.)
| | - Xiaoyong Chen
- School of Ecological and Environmental Sciences, Tiantong National Station for Forest Ecosystem Research, East China Normal University, Shanghai 200241, China
- Correspondence: (X.C.); (H.Y.); Tel.: +886-021-54345469 (X.C.); +886-020-37252759 (H.Y.)
| | - Hui Yu
- Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden, The Chinese Academy of Sciences, Guangzhou 510650, China; (L.C.); (D.-M.W.)
- Southern Marine Science and Engineering Guangdong Laboratory (Guangzhou), Guangzhou 511458, China
- Correspondence: (X.C.); (H.Y.); Tel.: +886-021-54345469 (X.C.); +886-020-37252759 (H.Y.)
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14
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Borges RM. Interactions Between Figs and Gall-Inducing Fig Wasps: Adaptations, Constraints, and Unanswered Questions. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.685542] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022] Open
Abstract
The ancient interaction between figs (Ficus, Moraceae) and their pollinating fig wasps is an unusual example of a mutualism between plants and gall-inducing insects. This review intends to offer fresh perspectives into the relationship between figs and the diversity of gall-inducing sycophiles which inhabit their enclosed globular inflorescences that function as microcosms. Besides gall-inducing pollinators, fig inflorescences are also inhabited by other gall-inducing wasps. This review evaluates the state of current knowledge on gall-induction by fig wasps and exposes the many lacunae in this area. This review makes connections between fig and gall-inducing wasp traits, and suggests relatively unexplored research avenues. This manuscript calls for an integrated approach that incorporates such diverse fields as life-history theory, plant mate choice, wasp sexual selection and local mate competition, plant embryology as well as seed and fruit dispersal. It calls for collaboration between researchers such as plant developmental biologists, insect physiologists, chemical ecologists and sensory biologists to jointly solve the many valuable questions that can be addressed in community ecology, co-evolution and species interaction biology using the fig inflorescence microcosm, that is inhabited by gall-inducing mutualistic and parasitic wasps, as a model system.
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15
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Tong X, Ding YY, Deng JY, Wang R, Chen XY. Source-sink dynamics assists the maintenance of a pollinating wasp. Mol Ecol 2021; 30:4695-4707. [PMID: 34347898 DOI: 10.1111/mec.16104] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2021] [Revised: 07/22/2021] [Accepted: 07/28/2021] [Indexed: 12/29/2022]
Abstract
Dispersal that unites spatially subdivided populations into a metapopulation with source-sink dynamics is crucial for species persistence in fragmented landscapes. Understanding such dynamics for pollinators is particularly urgent owing to the ongoing global pollination crisis. Here, we investigated the population structure and source-sink dynamics of a pollinating wasp (Wiebesia sp. 3) of Ficus pumila in the Zhoushan Archipelago of China. We found significant asymmetry in the pairwise migrant numbers for 22 of 28 cases on the historical timescale, but only two on the contemporary timescale. Despite a small population size, the sole island not colonized by a superior competitor wasp (Wiebesia sp. 1) consistently behaved as a net exporter of migrants, supplying large sinks. Comparable levels of genetic diversity, with few private alleles and low genetic differentiation (total Fst : 0.03; pairwise Fst : 0.0005-0.0791), were revealed among all the islands. There was a significant isolation-by-distance pattern caused mainly by migration between the competition-free island and other islands, otherwise the pattern was negligible. The clustering analysis failed to detect multiple gene pools for the whole region. Thus, the sinks were most probably organized into a patchy population. Moreover, the estimates of effective population sizes were comparable between the two timescales. Thus the source-sink dynamics embedded within a well-connected population network may allow Wiebesia sp. 3 to persist at a competitive disadvantage. This study provides evidence that metapopulations in the real world may be complicated and changeable over time, highlighting the necessity to study such metapopulations in detail.
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Affiliation(s)
- Xin Tong
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Shanghai Key Laboratory for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Yuan-Yuan Ding
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Shanghai Key Laboratory for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Jun-Yin Deng
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Shanghai Key Laboratory for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China
| | - Rong Wang
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Shanghai Key Laboratory for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China.,Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
| | - Xiao-Yong Chen
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, Shanghai Key Laboratory for Urban Ecological Processes and Eco-Restoration, School of Ecological and Environmental Sciences, East China Normal University, Shanghai, China.,Shanghai Institute of Pollution Control and Ecological Security, Shanghai, China
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16
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Wang G, Zhang X, Herre EA, McKey D, Machado CA, Yu WB, Cannon CH, Arnold ML, Pereira RAS, Ming R, Liu YF, Wang Y, Ma D, Chen J. Genomic evidence of prevalent hybridization throughout the evolutionary history of the fig-wasp pollination mutualism. Nat Commun 2021; 12:718. [PMID: 33531484 PMCID: PMC7854680 DOI: 10.1038/s41467-021-20957-3] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2019] [Accepted: 01/04/2021] [Indexed: 01/30/2023] Open
Abstract
Ficus (figs) and their agaonid wasp pollinators present an ecologically important mutualism that also provides a rich comparative system for studying functional co-diversification throughout its coevolutionary history (~75 million years). We obtained entire nuclear, mitochondrial, and chloroplast genomes for 15 species representing all major clades of Ficus. Multiple analyses of these genomic data suggest that hybridization events have occurred throughout Ficus evolutionary history. Furthermore, cophylogenetic reconciliation analyses detect significant incongruence among all nuclear, chloroplast, and mitochondrial-based phylogenies, none of which correspond with any published phylogenies of the associated pollinator wasps. These findings are most consistent with frequent host-switching by the pollinators, leading to fig hybridization, even between distantly related clades. Here, we suggest that these pollinator host-switches and fig hybridization events are a dominant feature of fig/wasp coevolutionary history, and by generating novel genomic combinations in the figs have likely contributed to the remarkable diversity exhibited by this mutualism.
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Affiliation(s)
- Gang Wang
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, China.
| | - Xingtan Zhang
- Shenzhen Branch, Guangdong Laboratory for Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, Shenzhen, China
- Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Mengla, Yunnan, China
| | - Edward Allen Herre
- Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama
| | - Doyle McKey
- CEFE, University of Montpellier, CNRS, University Paul Valery Montpellier 3, EPHE, IRD, Montpellier, France
| | - Carlos A Machado
- Department of Biology, University of Maryland, College Park, MD, USA
| | - Wen-Bin Yu
- Center for Integrative Conservation, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, China
| | | | | | - Rodrigo A S Pereira
- Department of Biology, FFCLRP, University of São Paulo, Ribeirao Preto, São Paulo, Brazil
| | - Ray Ming
- Department of Plant Biology, University of Illinois at Urbana-Champaign, Urbana, IL, USA
| | - Yi-Fei Liu
- College of Pharmacy, Hubei University of Chinese Medicine, Wuhan, Hubei, China
| | - Yibin Wang
- Center for Genomics and Biotechnology, Fujian Agriculture and Forestry University, Fuzhou, Fujian, China
| | - Dongna Ma
- Key Laboratory of the Ministry of Education for Coastal and Wetland Ecosystems, College of the Environment and Ecology, Xiamen University, Xiamen, Fujian, China
| | - Jin Chen
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, China.
- Center for Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Mengla, Yunnan, China.
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17
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Affiliation(s)
- Alicia Toon
- School of Biological Sciences; The University of Queensland; Brisbane Queensland 4072 Australia
| | - L. Irene Terry
- School of Biological Sciences; University of Utah; Salt Lake City Utah USA
| | | | - Gimme H. Walter
- School of Biological Sciences; The University of Queensland; Brisbane Queensland 4072 Australia
| | - Lyn G. Cook
- School of Biological Sciences; The University of Queensland; Brisbane Queensland 4072 Australia
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18
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Cooper L, Bunnefeld L, Hearn J, Cook JM, Lohse K, Stone GN. Low-coverage genomic data resolve the population divergence and gene flow history of an Australian rain forest fig wasp. Mol Ecol 2020; 29:3649-3666. [PMID: 32567765 DOI: 10.1111/mec.15523] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 06/09/2020] [Accepted: 06/12/2020] [Indexed: 12/16/2022]
Abstract
Population divergence and gene flow are key processes in evolution and ecology. Model-based analysis of genome-wide data sets allows discrimination between alternative scenarios for these processes even in nonmodel taxa. We used two complementary approaches (one based on the blockwise site frequency spectrum [bSFS], the second on the pairwise sequentially Markovian coalescent [PSMC]) to infer the divergence history of a fig wasp, Pleistodontes nigriventris. Pleistodontes nigriventris and its fig tree mutualist Ficus watkinsiana are restricted to rain forest patches along the eastern coast of Australia and are separated into The Northern population is to the north of the Southern populations by two dry forest corridors (the Burdekin and St. Lawrence Gaps). We generated whole genome sequence data for two haploid males per population and used the bSFS approach to infer the timing of divergence between northern and southern populations of P. nigriventris, and to discriminate between alternative isolation with migration (IM) and instantaneous admixture (ADM) models of postdivergence gene flow. Pleistodontes nigriventris has low genetic diversity (π = 0.0008), to our knowledge one of the lowest estimates reported for a sexually reproducing arthropod. We find strongest support for an ADM model in which the two populations diverged ca. 196 kya in the late Pleistocene, with almost 25% of northern lineages introduced from the south during an admixture event ca. 57 kya. This divergence history is highly concordant with individual population demographies inferred from each pair of haploid males using PSMC. Our analysis illustrates the inferences possible with genome-level data for small population samples of tiny, nonmodel organisms and adds to a growing body of knowledge on the population structure of Australian rain forest taxa.
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Affiliation(s)
- Lisa Cooper
- Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK
| | - Lynsey Bunnefeld
- Biological and Environmental Sciences, University of Stirling, Stirling, UK
| | - Jack Hearn
- Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK.,Vector Biology Department, Liverpool School of Tropical Medicine, Liverpool, UK
| | - James M Cook
- Hawkesbury Institute for the Environment, Western Sydney University, Richmond, NSW, Australia
| | - Konrad Lohse
- Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK
| | - Graham N Stone
- Institute of Evolutionary Biology, University of Edinburgh, Edinburgh, UK
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19
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Deng JY, Fu RH, Compton SG, Liu M, Wang Q, Yuan C, Zhang LS, Chen Y. Sky islands as foci for divergence of fig trees and their pollinators in southwest China. Mol Ecol 2020; 29:762-782. [PMID: 31943487 DOI: 10.1111/mec.15353] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2019] [Revised: 11/26/2019] [Accepted: 01/03/2020] [Indexed: 12/11/2022]
Abstract
The dynamics of populations and their divergence over time have shaped current levels of biodiversity and in the case of the "sky islands" of mountainous southwest (SW) China have resulted in an area of exceptional botanical diversity. Ficus tikoua is a prostrate fig tree subendemic to the area that displays unique intraspecific diversity, producing figs typical of different pollination modes in different parts of its range. By combining climate models, genetic variation in populations of the tree's obligate fig wasp pollinators and distributions of the different plant phenotypes, we examined how this unusual situation may have developed. We identified three genetically distinct groups of a single Ceratosolen pollinator species that have largely parapatric distributions. The complex topography of the region contributed to genetic divergence among the pollinators by facilitating geographical isolation and providing refugia. Migration along elevations in response to climate oscillations further enhanced genetic differentiation of the three pollinator groups. Their distributions loosely correspond to the distributions of the functionally significant morphological differences in the male figs of their host plants, but postglacial expansion of one group has not been matched by spread of its associated plant phenotype, possibly due to a major river barrier. The results highlight how interplay between the complex topography of the "sky island" complex and climate change has shaped intraspecies differentiation and relationships between the plant and its pollinator. Similar processes may explain the exceptional botanical diversity of SW China.
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Affiliation(s)
- Jun-Yin Deng
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China.,Division of Genetics, Department of Biochemistry, Genetics and Microbiology, University of Pretoria, Pretoria, South Africa
| | - Rong-Hua Fu
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China
| | | | - Mei Liu
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China
| | - Qin Wang
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China
| | - Chuan Yuan
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China
| | - Lu-Shui Zhang
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China
| | - Yan Chen
- Ecological Security and Protection Key Laboratory of Sichuan Province, Mianyang Normal University, Mianyang, China
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20
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Wang A, Peng Y, Harder LD, Huang J, Yang D, Zhang D, Liao W. The nature of interspecific interactions and co-diversification patterns, as illustrated by the fig microcosm. THE NEW PHYTOLOGIST 2019; 224:1304-1315. [PMID: 31494940 PMCID: PMC6856861 DOI: 10.1111/nph.16176] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2019] [Accepted: 09/02/2019] [Indexed: 05/05/2023]
Abstract
Interactions between mutualists, competitors, and antagonists have contrasting ecological effects that, sustained over generations, can influence micro- and macroevolution. Dissimilar benefits and costs for these interactions should cause contrasting co-diversification patterns between interacting clades, with prevalent co-speciation by mutualists, association loss by competitors, and host switching by antagonists. We assessed these expectations for a local assemblage of 26 fig species (Moraceae: Ficus), 26 species of mutualistic (pollinating), and 33 species of parasitic (galling) wasps (Chalcidoidea). Using newly acquired gene sequences, we inferred the phylogenies for all three clades. We then compared the three possible pairs of phylogenies to assess phylogenetic congruence and the relative frequencies of co-speciation, association duplication, switching, and loss. The paired phylogenies of pollinators with their mutualists and competitors were significantly congruent, unlike that of figs and their parasites. The distributions of macroevolutionary events largely agreed with expectations for mutualists and antagonists. By contrast, that for competitors involved relatively frequent association switching, as expected, but also unexpectedly frequent co-speciation. The latter result likely reflects the heterogeneous nature of competition among fig wasps. These results illustrate the influence of different interspecific interactions on co-diversification, while also revealing its dependence on specific characteristics of those interactions.
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Affiliation(s)
- Ai‐Ying Wang
- State Key Laboratory of Earth Surface Processes and Resource EcologyMinistry of Education Key Laboratory for Biodiversity Science and Ecological EngineeringBeijing Normal UniversityBeijingChina
| | - Yan‐Qiong Peng
- CAS Key Laboratory of Tropical Forest EcologyXishuangbanna Tropical Botanical GardenChinese Academy of SciencesKunmingChina
| | - Lawrence D. Harder
- Department of Biological SciencesUniversity of Calgary2500 University Drive NWCalgaryABCanada
| | - Jian‐Feng Huang
- CAS Key Laboratory of Tropical Forest EcologyXishuangbanna Tropical Botanical GardenChinese Academy of SciencesKunmingChina
| | - Da‐Rong Yang
- CAS Key Laboratory of Tropical Forest EcologyXishuangbanna Tropical Botanical GardenChinese Academy of SciencesKunmingChina
| | - Da‐Yong Zhang
- State Key Laboratory of Earth Surface Processes and Resource EcologyMinistry of Education Key Laboratory for Biodiversity Science and Ecological EngineeringBeijing Normal UniversityBeijingChina
| | - Wan‐Jin Liao
- State Key Laboratory of Earth Surface Processes and Resource EcologyMinistry of Education Key Laboratory for Biodiversity Science and Ecological EngineeringBeijing Normal UniversityBeijingChina
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21
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Satler JD, Herre EA, Jandér KC, Eaton DAR, Machado CA, Heath TA, Nason JD. Inferring processes of coevolutionary diversification in a community of Panamanian strangler figs and associated pollinating wasps. Evolution 2019; 73:2295-2311. [PMID: 31339553 DOI: 10.1111/evo.13809] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/19/2018] [Accepted: 07/18/2019] [Indexed: 12/27/2022]
Abstract
The fig and pollinator wasp obligate mutualism is diverse (∼750 described species), ecologically important, and ancient (∼80 Ma). Once thought to be an example of strict one-to-one cospeciation, current thinking suggests genera of pollinator wasps codiversify with corresponding sections of figs, but the degree to which cospeciation or other processes contribute to the association at finer scales is unclear. Here, we use genome-wide sequence data from a community of Panamanian strangler figs and associated wasp pollinators to estimate the relative contributions of four evolutionary processes generating cophylogenetic patterns in this mutualism: cospeciation, host switching, pollinator speciation, and pollinator extinction. Using a model-based approach adapted from the study of gene family evolution, our results demonstrate the importance of host switching of pollinator wasps at this fine phylogenetic and regional scale. Although we estimate a modest amount of cospeciation, simulations reveal the number of putative cospeciation events to be consistent with what would be expected by chance. Additionally, model selection tests identify host switching as a critical parameter for explaining cophylogenetic patterns in this system. Our study demonstrates a promising approach through which the history of evolutionary association between interacting lineages can be rigorously modeled and tested in a probabilistic phylogenetic framework.
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Affiliation(s)
- Jordan D Satler
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011
| | - Edward Allen Herre
- Smithsonian Tropical Research Institute, Unit 9100, P.O. Box 0498, Diplomatic Post Office, Armed Forces America 34002-9998
| | - K Charlotte Jandér
- Department of Ecology and Genetics, Evolutionary Biology Centre, Uppsala University, Norbyvägen 18D, 752 36, Uppsala, Sweden
| | - Deren A R Eaton
- Department of Ecology, Evolution and Environmental Biology, Columbia University, New York, New York, 10027
| | - Carlos A Machado
- Department of Biology, University of Maryland, College Park, Maryland, 20742
| | - Tracy A Heath
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011
| | - John D Nason
- Department of Ecology, Evolution, and Organismal Biology, Iowa State University, Ames, Iowa, 50011
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22
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Yu H, Tian E, Zheng L, Deng X, Cheng Y, Chen L, Wu W, Tanming W, Zhang D, Compton SG, Kjellberg F. Multiple parapatric pollinators have radiated across a continental fig tree displaying clinal genetic variation. Mol Ecol 2019; 28:2391-2405. [DOI: 10.1111/mec.15046] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2018] [Revised: 01/31/2019] [Accepted: 02/01/2019] [Indexed: 12/18/2022]
Affiliation(s)
- Hui Yu
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
- Centre for Plant Ecology, CAS Core Botanical Gardens Guangzhou China
| | - Enwei Tian
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
| | - Linna Zheng
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
| | - Xiaoxia Deng
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
| | - Yufen Cheng
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
| | - Lianfu Chen
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
| | - Wei Wu
- Guangdong Provincial Key Laboratory of Digital Botanical Garden and Key Laboratory of Plant Resource Conservation and Sustainable Utilization, South China Botanical Garden The Chinese Academy of Sciences Guangzhou China
| | | | - Dayong Zhang
- State Key Laboratory of Earth Surface Processes and Resource Ecology and MOE Key Laboratory for Biodiversity Science and Ecological Engineering, College of Life Sciences Beijing Normal University Beijing China
| | | | - Finn Kjellberg
- CEFE, CNR, EPHE, IRD Université de Montpellier, Université Paul‐Valéry Montpellier Montpellier France
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23
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Bennett AJ, Bushmaker T, Cameron K, Ondzie A, Niama FR, Parra HJ, Mombouli JV, Olson SH, Munster VJ, Goldberg TL. Diverse RNA viruses of arthropod origin in the blood of fruit bats suggest a link between bat and arthropod viromes. Virology 2018; 528:64-72. [PMID: 30576861 DOI: 10.1016/j.virol.2018.12.009] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2018] [Revised: 12/09/2018] [Accepted: 12/10/2018] [Indexed: 12/22/2022]
Abstract
Bats host diverse viruses due to their unique ecology, behavior, and immunology. However, the role of other organisms with which bats interact in nature is understudied as a contributor to bat viral diversity. We discovered five viruses in the blood of fruit bats (Hypsignathus monstrosus) from the Republic of Congo. Of these five viruses, four have phylogenetic and genomic features suggesting an arthropod origin (a dicistrovirus, a nodavirus, and two tombus-like viruses), while the fifth (a hepadnavirus) is clearly of mammalian origin. We also report the parallel discovery of related tombus-like viruses in fig wasps and primitive crane flies from bat habitats, as well as high infection rates of bats with haemosporidian parasites (Hepatocystis sp.). These findings suggest transmission between arthropods and bats, perhaps through ingestion or hyperparasitism (viral infection of bat parasites). Some "bat-associated" viruses may be epidemiologically linked to bats through their ecological associations with invertebrates.
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Affiliation(s)
- Andrew J Bennett
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53706, USA
| | - Trenton Bushmaker
- Laboratory of Virology, Virus Ecology Unit, Division of Intramural Research, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, USA
| | - Kenneth Cameron
- Wildlife Conservation Society, Wildlife Health Program, 2300 Southern Boulevard, Bronx, NY, USA
| | - Alain Ondzie
- Wildlife Conservation Society, Wildlife Health Program, 2300 Southern Boulevard, Bronx, NY, USA
| | - Fabien R Niama
- Laboratoire National de Santé Publique, Brazzaville, Republic of Congo
| | | | | | - Sarah H Olson
- Wildlife Conservation Society, Wildlife Health Program, 2300 Southern Boulevard, Bronx, NY, USA
| | - Vincent J Munster
- Laboratory of Virology, Virus Ecology Unit, Division of Intramural Research, National Institutes of Allergy and Infectious Diseases, National Institutes of Health, Rocky Mountain Laboratories, Hamilton, USA
| | - Tony L Goldberg
- Department of Pathobiological Sciences, School of Veterinary Medicine, University of Wisconsin-Madison, Madison, WI 53706, USA.
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Luo SX, Yao G, Wang Z, Zhang D, Hembry DH. A Novel, Enigmatic Basal Leafflower Moth Lineage Pollinating a Derived Leafflower Host Illustrates the Dynamics of Host Shifts, Partner Replacement, and Apparent Coadaptation in Intimate Mutualisms. Am Nat 2017; 189:422-435. [PMID: 28350503 DOI: 10.1086/690623] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Leafflower plant/leafflower moth brood pollination mutualisms are widespread in the Paleotropics. Leafflower moths pollinate leafflower plants, but their larvae consume a subset of the hosts' seeds. These interactions are highly phylogenetically constrained: six clades of leafflower plants are each associated with a unique clade of leafflower moths (Epicephala). Here, we report a previously unrecognized basal seventh pollinating Epicephala lineage-associated with the highly derived leafflower clade Glochidion-in Asia. Epicephala lanceolaria is a pollinator and seed predator of Glochidion lanceolarium. Phylogenetic inference indicates that the ancestor of E. lanceolaria most likely shifted onto the ancestor of G. lanceolarium and displaced the ancestral allospecific Epicephala pollinator in at least some host populations. The unusual and apparently coadapted aspects of the G. lanceolarium/E. lanceolaria reproductive cycles suggest that plant-pollinator coevolution may have played a role in this displacement and provide insights into the dynamics of host shifts and trait coevolution in this specialized mutualism.
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Wang G, Cannon CH, Chen J. Pollinator sharing and gene flow among closely related sympatric dioecious fig taxa. Proc Biol Sci 2016; 283:rspb.2015.2963. [PMID: 27075252 DOI: 10.1098/rspb.2015.2963] [Citation(s) in RCA: 37] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2015] [Accepted: 03/16/2016] [Indexed: 11/12/2022] Open
Abstract
Hybridization and insect pollination are widely believed to increase rates of plant diversification. The extreme diversity of figs (Ficus) and their obligate pollinators, fig wasps (Agaonidae), provides an opportunity to examine the possible role of pollinator-mediated hybridization in plant diversification. Increasing evidence suggests that pollinator sharing and hybridization occurs among fig taxa, despite relatively strict coevolution with the pollinating wasp. Using five sympatric dioecious fig taxa and their pollinators, we examine the degree of pollinator sharing and inter-taxa gene flow. We experimentally test pollinator preference for floral volatiles, the main host recognition signal, from different figs. All five fig taxa shared pollinators with other taxa, and gene flow occurred between fig taxa within and between sections. Floral volatiles of each taxon attracted more than one pollinator species. Floral volatiles were more similar between closely related figs, which experienced higher levels of pollinator sharing and inter-taxa gene flow. This study demonstrates that pollinator sharing and inter-taxa gene flow occurs among closely related sympatric dioecious fig taxa and that pollinators choose the floral volatiles of multiple fig taxa. The implications of pollinator sharing and inter-taxa gene flow on diversification, occurring even in this highly specialized obligate pollination system, require further study.
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Affiliation(s)
- Gang Wang
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, People's Republic of China Kunming College of Life Science, University of Chinese Academy of Sciences, Kunming 650204, People's Republic of China
| | - Charles H Cannon
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, People's Republic of China Center for Tree Science, The Morton Arboretum, Lisle, IL 60532, USA
| | - Jin Chen
- Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan 666303, People's Republic of China
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Wachi N, Kusumi J, Tzeng HY, Su ZH. Genome-wide sequence data suggest the possibility of pollinator sharing by host shift in dioecious figs (Moraceae,Ficus). Mol Ecol 2016; 25:5732-5746. [DOI: 10.1111/mec.13876] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2015] [Accepted: 09/19/2016] [Indexed: 11/29/2022]
Affiliation(s)
- Nakatada Wachi
- JT Biohistory Research Hall; 1-1 Murasaki-cho Takatsuki Osaka 569-1125 Japan
| | - Junko Kusumi
- Department of Environmental Changes; Faculty of Social and Cultural Studies; Kyushu University; 744 Motooka Nishi-ku Fukuoka 819-0395 Japan
| | - Hsy-Yu Tzeng
- Department of Forestry; National Chung Hsing University; Taichung 402 Taiwan
| | - Zhi-Hui Su
- JT Biohistory Research Hall; 1-1 Murasaki-cho Takatsuki Osaka 569-1125 Japan
- Department of Biological Sciences; Graduate School of Science; Osaka University; 1-1 Machikaneyama Toyonaka Osaka 560-0043 Japan
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Hembry DH, Althoff DM. Diversification and coevolution in brood pollination mutualisms: Windows into the role of biotic interactions in generating biological diversity. AMERICAN JOURNAL OF BOTANY 2016; 103:1783-1792. [PMID: 27765775 PMCID: PMC6110533 DOI: 10.3732/ajb.1600056] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/06/2016] [Accepted: 05/10/2016] [Indexed: 05/05/2023]
Abstract
Brood pollination mutualisms-interactions in which specialized insects are both the pollinators (as adults) and seed predators (as larvae) of their host plants-have been influential study systems for coevolutionary biology. These mutualisms include those between figs and fig wasps, yuccas and yucca moths, leafflowers and leafflower moths, globeflowers and globeflower flies, Silene plants and Hadena and Perizoma moths, saxifrages and Greya moths, and senita cacti and senita moths. The high reciprocal diversity and species-specificity of some of these mutualisms have been cited as evidence that coevolution between plants and pollinators drives their mutual diversification. However, the mechanisms by which these mutualisms diversify have received less attention. In this paper, we review key hypotheses about how these mutualisms diversify and what role coevolution between plants and pollinators may play in this process. We find that most species-rich brood pollination mutualisms show significant phylogenetic congruence at high taxonomic scales, but there is limited evidence for the processes of both cospeciation and duplication, and there are no unambiguous examples known of strict-sense contemporaneous cospeciation. Allopatric speciation appears important across multiple systems, particularly in the insects. Host-shifts appear to be common, and widespread host-shifts by pollinators may displace other pollinator lineages. There is relatively little evidence for a "coevolution through cospeciation" model or that coevolution promotes speciation in these systems. Although we have made great progress in understanding the mechanisms by which brood pollination mutualisms diversify, many opportunities remain to use these intriguing symbioses to understand the role of biotic interactions in generating biological diversity.
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Affiliation(s)
- David H Hembry
- Department of Ecology and Evolutionary Biology, University of Arizona, P. O. Box 210088, Tucson, Arizona 85721 USA
| | - David M Althoff
- Department of Biology, Syracuse University, 107 College Place, Syracuse, New York, 13244 USA
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Yoder JB, Leebens-Mack J. The evolutionary ecology of "mutual services" in the 21st century. AMERICAN JOURNAL OF BOTANY 2016; 103:1712-1716. [PMID: 27793857 DOI: 10.3732/ajb.1600367] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2016] [Accepted: 10/13/2016] [Indexed: 06/06/2023]
Affiliation(s)
- Jeremy B Yoder
- Department of Forest and Conservation Sciences, University of British Columbia, Vancouver, British Columbia V6T 1Z4 Canada
| | - James Leebens-Mack
- Department of Plant Biology, University of Georgia, Athens, Georgia 30602-7271 USA
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Geographic structuring into vicariant species-pairs in a wide-ranging, high-dispersal plant–insect mutualism: the case of Ficus racemosa and its pollinating wasps. Evol Ecol 2016. [DOI: 10.1007/s10682-016-9836-5] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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Hossaert-McKey M, Proffit M, Soler CCL, Chen C, Bessière JM, Schatz B, Borges RM. How to be a dioecious fig: Chemical mimicry between sexes matters only when both sexes flower synchronously. Sci Rep 2016; 6:21236. [PMID: 26888579 PMCID: PMC4758059 DOI: 10.1038/srep21236] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2015] [Accepted: 01/14/2016] [Indexed: 11/18/2022] Open
Abstract
In nursery pollination mutualisms, which are usually obligate interactions, olfactory attraction of pollinators by floral volatile organic compounds (VOCs) is the main step in guaranteeing partner encounter. However, mechanisms ensuring the evolutionary stability of dioecious fig-pollinator mutualisms, in which female fig trees engage in pollination by deceit resulting in zero reproductive success of pollinators that visit them, are poorly understood. In dioecious figs, individuals of each sex should be selected to produce odours that their pollinating wasps cannot distinguish, especially since pollinators have usually only one choice of a nursery during their lifetime. To test the hypothesis of intersexual chemical mimicry, VOCs emitted by pollen-receptive figs of seven dioecious species were compared using headspace collection and gas chromatography-mass spectrometry analysis. First, fig-flower scents varied significantly among species, allowing host-species recognition. Second, in species in which male and female figs are synchronous, intersexual VOC variation was not significant. However, in species where figs of both sexes flower asynchronously, intersexual variation of VOCs was detectable. Finally, with one exception, there was no sexual dimorphism in scent quantity. We show that there are two ways to use scent to be a dioecious fig based on differences in flowering synchrony between the sexes.
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Affiliation(s)
- M. Hossaert-McKey
- Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS—Université de Montpellier—Université Paul Valéry Montpellier—EPHE, 1919 route de Mende, 34293 Montpellier, France
| | - M. Proffit
- Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS—Université de Montpellier—Université Paul Valéry Montpellier—EPHE, 1919 route de Mende, 34293 Montpellier, France
| | - C. C. L. Soler
- Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS—Université de Montpellier—Université Paul Valéry Montpellier—EPHE, 1919 route de Mende, 34293 Montpellier, France
| | - C. Chen
- Xishuangbanna Tropical Botanical Garden (XTBG); National Chinese Academy of Sciences; Menglun, Yunnan China
| | - J.-M. Bessière
- Laboratoire de Chimie Appliquée, Ecole Nationale Supérieure de Chimie de Montpellier, 8 rue de l’Ecole Normale, 34296 Montpellier Cedex 5, France
| | - B. Schatz
- Centre d’Ecologie Fonctionnelle et Evolutive (CEFE), UMR 5175, CNRS—Université de Montpellier—Université Paul Valéry Montpellier—EPHE, 1919 route de Mende, 34293 Montpellier, France
| | - R. M. Borges
- Centre for Ecological Sciences, Indian Institute of Science, Bangalore 560 012, India
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Borges RM. On the Air: Broadcasting and Reception of Volatile Messages in Brood-Site Pollination Mutualisms. SIGNALING AND COMMUNICATION IN PLANTS 2016. [DOI: 10.1007/978-3-319-33498-1_10] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
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