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Mohamad K, Olsson M, Andersson G, Purwantara B, van Tol HTA, Rodriguez-Martinez H, Colenbrander B, Lenstra JA. The origin of Indonesian cattle and conservation genetics of the Bali cattle breed. Reprod Domest Anim 2012; 47 Suppl 1:18-20. [PMID: 22212207 DOI: 10.1111/j.1439-0531.2011.01960.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Both Bos indicus (zebu) and Bos javanicus (banteng) contribute to the Indonesian indigenous livestock, which is supposedly of a mixed species origin, not by direct breeding but by secondary cross-breeding. Here, the analysis of mitochondrial, Y-chromosomal and microsatellite DNA showed banteng introgression of 10-16% in Indonesian zebu breeds with East-Javanese Madura and Galekan cattle having higher levels of autosomal banteng introgression (20-30%) and combine a zebu paternal lineage with a predominant (Madura) or even complete (Galekan) maternal banteng origin. Two Madura bulls carried taurine Y-chromosomal haplotypes, presumably of French Limousin origin. There was no evidence for zebu introgression in five populations of the Bali cattle, a domestic form of the banteng.
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Affiliation(s)
- K Mohamad
- Faculty of Veterinary Medicine, Bogor Agricultural University, Bogor, Indonesia
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Namikawa T, Ito S, Amano T. Genetic relationships and phylogeny of East and Southeast Asian cattle: genetic distance and principal component analyses. ACTA ACUST UNITED AC 2010. [DOI: 10.1111/j.1439-0388.1984.tb00019.x] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Mohamad K, Olsson M, van Tol HTA, Mikko S, Vlamings BH, Andersson G, Rodríguez-Martínez H, Purwantara B, Paling RW, Colenbrander B, Lenstra JA. On the origin of Indonesian cattle. PLoS One 2009; 4:e5490. [PMID: 19436739 PMCID: PMC2677627 DOI: 10.1371/journal.pone.0005490] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2009] [Accepted: 04/14/2009] [Indexed: 11/18/2022] Open
Abstract
BACKGROUND Two bovine species contribute to the Indonesian livestock, zebu (Bos indicus) and banteng (Bos javanicus), respectively. Although male hybrid offspring of these species is not fertile, Indonesian cattle breeds are supposed to be of mixed species origin. However, this has not been documented and is so far only supported by preliminary molecular analysis. METHODS AND FINDINGS Analysis of mitochondrial, Y-chromosomal and microsatellite DNA showed a banteng introgression of 10-16% in Indonesian zebu breeds. East-Javanese Madura and Galekan cattle have higher levels of autosomal banteng introgression (20-30%) and combine a zebu paternal lineage with a predominant (Madura) or even complete (Galekan) maternal banteng origin. Two Madura bulls carried taurine Y-chromosomal haplotypes, presumably of French Limousin origin. In contrast, we did not find evidence for zebu introgression in five populations of the Bali cattle, a domestic form of the banteng. CONCLUSIONS Because of their unique species composition Indonesian cattle represent a valuable genetic resource, which potentially may also be exploited in other tropical regions.
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Affiliation(s)
- Kusdiantoro Mohamad
- Faculty of Veterinary Medicine, Bogor Agricultural University, Bogor, Indonesia
- Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Mia Olsson
- Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden
- Department of Microbiology and Medical Biochemistry, Uppsala University, Uppsala, Sweden
| | | | - Sofia Mikko
- Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden
| | - Bart H. Vlamings
- Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Göran Andersson
- Department of Animal Breeding and Genetics, Swedish University of Agricultural Sciences (SLU), Uppsala, Sweden
| | | | - Bambang Purwantara
- Faculty of Veterinary Medicine, Bogor Agricultural University, Bogor, Indonesia
| | - Robert W. Paling
- Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Ben Colenbrander
- Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Johannes A. Lenstra
- Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
- * E-mail: J.A.
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Namikawa T, Nagai A, Takenaka O, Takenaka A. Bovine haemoglobin beta A Zebu, beta A43(CD3)Ser----Thr: an intermediate globin type between the beta A and beta D Zambia is present in Indian zebu cattle. Anim Genet 2009; 18:133-41. [PMID: 3662113 DOI: 10.1111/j.1365-2052.1987.tb00752.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
Two bovine haemoglobin beta chains, electrophoretically identical with the beta A chain of Herefords, were obtained from Ongole and Banteng, Bos javanicus, cattle. The amino acid residue differences of the two beta chains were compared by electrophoresis, cation-exchange and reverse-phase chromatography, amino acid analyses, and Edman degradation in comparison with beta A chain. The results showed that two beta chains differed from the beta A chain of the Hereford breed by the substitution of serine with threonine at the beta 43 position. No other difference was found between the two chains and beta A. This new beta chain type was termed beta A Zebu, which forms a possible evolutionarily transitional type between the beta A and the rare variant beta D Zambia found previously in African zebu cattle. The beta A Zebu differentiates from the previous beta B by at least four amino acid substitutions involving five codon-base changes.
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Affiliation(s)
- T Namikawa
- Laboratory of Animal Genetics, Faculty of Agriculture, Nagoya University, Japan
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Bradshaw CJA, Isagi Y, Kaneko S, Bowman DMJS, Brook BW. Conservation value of non-native banteng in northern Australia. CONSERVATION BIOLOGY : THE JOURNAL OF THE SOCIETY FOR CONSERVATION BIOLOGY 2006; 20:1306-11. [PMID: 16922247 DOI: 10.1111/j.1523-1739.2006.00428.x] [Citation(s) in RCA: 16] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/11/2023]
Abstract
The global species extinction crisis has provided the impetus for elaborate translocation, captive breeding, and cloning programs, but more extreme actions may be necessary. We used mitochondrial DNA, Y-chromosome, and nuclear lactoferrin-encoding gene sequencing to identify a wild population of a pure-strain endangered bovid (Bos javanicus) introduced into northern Australia over 150 years ago. This places the Australian population in a different conservation category relative to its domesticated conspecific in Indonesia (i.e., Bali cattle) that has varying degrees of introgression from other domesticated Bos spp. The success of this endangered non-native species demonstrates that although risky, the deliberate introduction of threatened exotic species into non-native habitat may provide, under some circumstances, a biologically feasible option for conserving large herbivores otherwise imperiled in their native range.
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Affiliation(s)
- Corey J A Bradshaw
- School for Environmental Research, Charles Darwin University, Darwin, Northern Territory 0909, Australia.
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Verkaar ELC, Vervaecke H, Roden C, Romero Mendoza L, Barwegen MW, Susilawati T, Nijman IJ, Lenstra JA. Paternally inherited markers in bovine hybrid populations. Heredity (Edinb) 2004; 91:565-9. [PMID: 14508501 DOI: 10.1038/sj.hdy.6800359] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Abstract
The genetic integrity of crossfertile bovine- or cattle-like species may be endangered by species hybridization. Previously, amplified fragment length polymorphism, satellite fragment length polymorphism and microsatellite assays have been used to analyze the species composition of nuclear DNA in taurine cattle, zebu, banteng and bison populations, while mitochondrial DNA reveals the origin of the maternal lineages. Here, we describe species-specific markers of the paternally transmitted Y-chromosome for the direct detection of male-mediated introgression. Convenient PCR-restriction fragment length polymorphism and competitive PCR assays are shown to differentiate the Y-chromosomes of taurine cattle, American bison and European bison, and to detect the banteng origin of Indonesian Madura and Bali cattle bulls.
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Affiliation(s)
- E L C Verkaar
- Faculty of Veterinary Medicine, Utrecht University, Yalelaan 8, 3584 CL Utrecht, The Netherlands
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Nijman IJ, Otsen M, Verkaar ELC, de Ruijter C, Hanekamp E, Ochieng JW, Shamshad S, Rege JEO, Hanotte O, Barwegen MW, Sulawati T, Lenstra JA. Hybridization of banteng (Bos javanicus) and zebu (Bos indicus) revealed by mitochondrial DNA, satellite DNA, AFLP and microsatellites. Heredity (Edinb) 2003; 90:10-6. [PMID: 12522420 DOI: 10.1038/sj.hdy.6800174] [Citation(s) in RCA: 75] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Abstract
Hybridization between wild and domestic bovine species occurs worldwide either spontaneously or by organized crossing. We have analysed hybridization of banteng (Bos javanicus) and zebu (Bos indicus) in south-east Asian cattle using mitochondrial DNA (PCR-RFLP and sequencing), AFLP, satellite fragment length polymorphisms (SFLP or PCR-RFLP of satellite DNA) and microsatellite genotyping. The Indonesian Madura zebu breed is reputed to be of hybrid zebu-banteng origin, but this has never been documented and Bali cattle are considered to be a domesticated form of banteng. The banteng mitochondrial type was found in all animals sampled on the isle of Bali, Indonesia, but only in 35% of the animals from a Malaysian Bali-cattle population. The Madura animals also carried mitochondrial DNA of either zebu and banteng origin. In both populations, zebu introgression was confirmed by AFLP and SFLP. Microsatellite analysis of the Malaysian Bali population revealed for 12 out of 15 loci screened, Bali-cattle-specific alleles, several of which were also found in wild banteng animals. The tools we have described are suitable for the detection of species in introgression studies, which are essential for the genetic description of local breeds and the preservation of their economic and cultural value.
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Affiliation(s)
- I J Nijman
- Institute of Infectious Diseases and Immunology, Faculty of Veterinary Medicine, Utrecht University, The Netherlands.
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Mitochondrial DNA polymorphism in native Philippine cattle based on restriction endonuclease cleavage patterns. Biochem Genet 1989. [DOI: 10.1007/pl00020587] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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Watanabe T, Masangkay JS, Wakana S, Saitou N, Tomita T. Mitochondrial DNA polymorphism in native Philippine cattle based on restriction endonuclease cleavage patterns. Biochem Genet 1989; 27:431-8. [PMID: 2575897 DOI: 10.1007/bf02399672] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
An analysis of patterns of cleavage of mtDNA by restriction endonucleases was performed for nine individuals from the Philippine population of native cattle. MtDNA polymorphisms were detected in the restriction patterns generated by the following six enzymes, BamHI, BglII, EcoRV, HindIII, PstI, and ScaI. The restriction patterns showing polymorphisms were distributed nonrandomly among the nine individuals examined from the Philippine population of native cattle, indicating the existence of two separate types of mtDNA. These two types of mtDNA are very different from each other, at the level of subspecies. Since the native Philippine cattle are considered to represent an admixture of European and Indian cattle, the two types of mtDNA must be derived from the mtDNAs of both varieties. The polymorphic sites in mtDNA have been located on a restriction map, and the nucleotide substitutions at some of the sites have also been estimated.
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Affiliation(s)
- T Watanabe
- Department of Biochemistry, Institute for Developmental Research, Aichi Prefecture Colony, Japan
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Namikawa T, Takenaka O, Takahashi K. Hemoglobin Bali (bovine): beta A 18(Bl)Lys leads to His: one of the "missing links" between beta A and beta B of domestic cattle exists in the Bali cattle (Bovinae, Box banteng). Biochem Genet 1983; 21:787-96. [PMID: 6626147 DOI: 10.1007/bf00498925] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The structure of the beta chain of adult bovine hemoglobin Bali of the Bali cattle was determined and compared to those of beta A, beta B, and other beta-chain variants of domestic cattle reported previously. The lysine residue at beta A18 was substituted by histidine in beta Bali18. This change requires two base substitutions at the codon and is also found in beta B18. The beta B chain differs from the beta A chain at residue Nos. 15, 18, and 119. It was concluded that a common ancestor of the beta B and beta Bali first diverged from the beta A chain through the Lys leads to His substitution. This fact indicates that the high degree of dimorphism of the beta A and beta B chains in Indian humped cattle is a result of its hybrid origin. An evolutionary tree for the bovine hemoglobin beta-chain variants was constructed based on parsimonious evolution and homology with related species.
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