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Li J, Liu L, Wang L, Rao IM, Wang Z, Chen Z. AcEXPA1, an α-expansin gene, participates in the aluminum tolerance of carpetgrass (Axonopus compressus) through root growth regulation. PLANT CELL REPORTS 2024; 43:159. [PMID: 38822842 DOI: 10.1007/s00299-024-03243-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Accepted: 05/19/2024] [Indexed: 06/03/2024]
Abstract
KEY MESSAGE AcEXPA1, an aluminum (Al)-inducible expansin gene, is demonstrated to be involved in carpetgrass (Axonopus compressus) root elongation under Al toxicity through analyzing composite carpetgrass plants overexpressing AcEXPA1. Aluminum (Al) toxicity is a major mineral toxicity that limits plant productivity in acidic soils by inhibiting root growth. Carpetgrass (Axonopus compressus), a dominant warm-season turfgrass widely grown in acidic tropical soils, exhibits superior adaptability to Al toxicity. However, the mechanisms underlying its Al tolerance are largely unclear, and knowledge of the functional genes involved in Al detoxification in this turfgrass is limited. In this study, phenotypic variation in Al tolerance, as indicated by relative root elongation, was observed among seventeen carpetgrass genotypes. Al-responsive genes related to cell wall modification were identified in the roots of the Al-tolerant genotype 'A58' via transcriptome analysis. Among them, a gene encoding α-expansin was cloned and designated AcEXPA1 for functional characterization. Observed Al dose effects and temporal responses revealed that Al induced AcEXPA1 expression in carpetgrass roots. Subsequently, an efficient and convenient Agrobacterium rhizogenes-mediated transformation method was established to generate composite carpetgrass plants with transgenic hairy roots for investigating AcEXPA1 involvement in carpetgrass root growth under Al toxicity. AcEXPA1 was successfully overexpressed in the transgenic hairy roots, and AcEXPA1 overexpression enhanced Al tolerance in composite carpetgrass plants through a decrease in Al-induced root growth inhibition. Taken together, these findings suggest that AcEXPA1 contributes to Al tolerance in carpetgrass via root growth regulation.
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Affiliation(s)
- Jifu Li
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture and Rual Affairs/Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, People's Republic of China
- National Key Laboratory for Tropical Crop Breeding, Sanya, 572024, People's Republic of China
| | - Liting Liu
- College of Tropical Agriculture and Forestry, Sanya Nanfan Research Institute, Hainan University, 58 Renmin Avenue, Haikou, 570228, People's Republic of China
| | - Linjie Wang
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture and Rual Affairs/Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, People's Republic of China
| | - Idupulapati M Rao
- The Alliance of Bioversity International and the International Center for Tropical Agriculture (CIAT), 763537, Cali, Colombia
| | - Zhiyong Wang
- College of Tropical Agriculture and Forestry, Sanya Nanfan Research Institute, Hainan University, 58 Renmin Avenue, Haikou, 570228, People's Republic of China.
| | - Zhijian Chen
- Key Laboratory of Crop Gene Resources and Germplasm Enhancement in Southern China, Ministry of Agriculture and Rual Affairs/Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, 571101, People's Republic of China.
- National Key Laboratory for Tropical Crop Breeding, Sanya, 572024, People's Republic of China.
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2
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Zhou Q, Li X, Zheng X, Zhang X, Jiang Y, Shen H. Metabolomics reveals the phytotoxicity mechanisms of foliar spinach exposed to bulk and nano sizes of PbCO 3. JOURNAL OF HAZARDOUS MATERIALS 2024; 465:133097. [PMID: 38113737 DOI: 10.1016/j.jhazmat.2023.133097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/07/2023] [Revised: 11/14/2023] [Accepted: 11/23/2023] [Indexed: 12/21/2023]
Abstract
PbCO3 is an ancient raw material for Pb minerals and continues to pose potential risks to the environment and human health through mining and industrial processes. However, the specific effects of unintentional PbCO3 discharge on edible plants remain poorly understood. This study unravels how foliar application of PbCO3 induces phytotoxicity by potentially influencing leaf morphology, photosynthetic pigments, oxidative stress, and metabolic pathways related to energy regulation, cell damage, and antioxidant defense in Spinacia oleracea L. Additionally, it quantifies the resultant human health risks. Plants were foliarly exposed to PbCO3 nanoparticles (NPs) and bulk products (BPs), as well as Pb2+ at 0, 5, 10, 25, 50, and 100 mg·L-1 concentrations once a day for three weeks. The presence and localization of PbCO3 NPs inside the plant cells were confirmed by TEM-EDS analysis. The maximum accumulation of total Pb was recorded in the root (2947.77 mg·kg-1 DW for ion exposure), followed by the shoot (942.50 mg·kg-1 DW for NPs exposure). The results revealed that PbCO3 and Pb2+ exposure had size- and dose-dependent inhibitory effects on spinach length, biomass, and photosynthesis attributes, inducing impacts on the antioxidase activity of CAT, membrane permeability, and nutrient elements absorption and translocation. Pb2+ exhibited pronounced toxicity in morphology and chlorophyll; PbCO3 BP exposure accumulated the most lipid peroxidation products of MDA and H2O2; and PbCO3 NPs triggered the largest cell membrane damage. Furthermore, PbCO3 NPs at 10 and 100 mg·L-1 induced dose-dependent metabolic reprogramming in spinach leaves, disturbing the metabolic mechanisms related to amino acids, antioxidant defense, oxidative phosphorylation, fatty acid cycle, and the respiratory chain. The spinach showed a non-carcinogenic health risk hierarchy: Pb2+ > PbCO3 NPs > PbCO3 BPs, with children more vulnerable than adults. These findings enhance our understanding of PbCO3 particle effects on food security, emphasizing the need for further research to minimize their impact on human dietary health.
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Affiliation(s)
- Qishang Zhou
- Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an, Shaanxi 710062, PR China; International Joint Research Centre of Shaanxi Province for Pollutant Exposure and Eco-environmental Health, Xi'an, Shaanxi 710062, PR China
| | - Xiaoping Li
- Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an, Shaanxi 710062, PR China; International Joint Research Centre of Shaanxi Province for Pollutant Exposure and Eco-environmental Health, Xi'an, Shaanxi 710062, PR China; MRC Centre for Environment and Health, Environmental Research Group, School of Public Health, Imperial College London, 80 Wood Lane, London W12 0BZ, UK.
| | - Xueming Zheng
- Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an, Shaanxi 710062, PR China; International Joint Research Centre of Shaanxi Province for Pollutant Exposure and Eco-environmental Health, Xi'an, Shaanxi 710062, PR China
| | - Xu Zhang
- Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an, Shaanxi 710062, PR China; International Joint Research Centre of Shaanxi Province for Pollutant Exposure and Eco-environmental Health, Xi'an, Shaanxi 710062, PR China
| | - Yueheng Jiang
- Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an, Shaanxi 710062, PR China; International Joint Research Centre of Shaanxi Province for Pollutant Exposure and Eco-environmental Health, Xi'an, Shaanxi 710062, PR China
| | - He Shen
- Department of Environmental Science, School of Geography and Tourism, Shaanxi Normal University, Xi'an, Shaanxi 710062, PR China; International Joint Research Centre of Shaanxi Province for Pollutant Exposure and Eco-environmental Health, Xi'an, Shaanxi 710062, PR China
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3
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DeLoose M, Clúa J, Cho H, Zheng L, Masmoudi K, Desnos T, Krouk G, Nussaume L, Poirier Y, Rouached H. Recent advances in unraveling the mystery of combined nutrient stress in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:1764-1780. [PMID: 37921230 DOI: 10.1111/tpj.16511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/05/2023] [Accepted: 10/11/2023] [Indexed: 11/04/2023]
Abstract
Efficiently regulating growth to adapt to varying resource availability is crucial for organisms, including plants. In particular, the acquisition of essential nutrients is vital for plant development, as a shortage of just one nutrient can significantly decrease crop yield. However, plants constantly experience fluctuations in the presence of multiple essential mineral nutrients, leading to combined nutrient stress conditions. Unfortunately, our understanding of how plants perceive and respond to these multiple stresses remains limited. Unlocking this mystery could provide valuable insights and help enhance plant nutrition strategies. This review focuses specifically on the regulation of phosphorous homeostasis in plants, with a primary emphasis on recent studies that have shed light on the intricate interactions between phosphorous and other essential elements, such as nitrogen, iron, and zinc, as well as non-essential elements like aluminum and sodium. By summarizing and consolidating these findings, this review aims to contribute to a better understanding of how plants respond to and cope with combined nutrient stress.
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Affiliation(s)
- Megan DeLoose
- The Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Joaquin Clúa
- Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015, Lausanne, Switzerland
| | - Huikyong Cho
- The Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Luqing Zheng
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, China
| | - Khaled Masmoudi
- Department of Integrative Agriculture, College of Agriculture and Veterinary Medicine, United Arab Emirates University, Al-Ain, Abu Dhabi, United Arab Emirates
| | - Thierry Desnos
- Aix Marseille Univ, CEA, CNRS, BIAM, EBMP, UMR7265, Cité des énergies, 13115, Saint-Paul-lez-Durance, France
| | - Gabriel Krouk
- IPSiM, Univ. Montpellier, CNRS, INRAE, Montpellier, France
| | - Laurent Nussaume
- Aix Marseille Univ, CEA, CNRS, BIAM, EBMP, UMR7265, Cité des énergies, 13115, Saint-Paul-lez-Durance, France
| | - Yves Poirier
- Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015, Lausanne, Switzerland
| | - Hatem Rouached
- The Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
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4
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Lin ML, Lu F, Zhou X, Xiong X, Lai NW, Li-Song C, Zeng-Rong H. The adaptation of root cell wall pectin to copper toxicity in two citrus species differing in copper tolerance: remodeling and responding. TREE PHYSIOLOGY 2023; 43:1825-1840. [PMID: 37490400 DOI: 10.1093/treephys/tpad092] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2023] [Revised: 06/16/2023] [Accepted: 07/17/2023] [Indexed: 07/27/2023]
Abstract
Citrus species are prone to suffer from copper (Cu) toxicity because of improper application of Cu-based agrochemicals. Copper immobilization mediated by pectin methylesterase (PME) in the root cell wall (CW) is effective for Cu detoxification. However, the underlying mechanisms of the structural modification and stress responses of citrus root CW pectin to Cu toxicity have been less discussed. In the present study, seedlings of 'Shatian pummelo' (Citrus grandis L. Osbeck) and 'Xuegan' (Citrus sinensis L. Osbeck), which differ in Cu tolerance, were irrigated with nutrient solution containing 0.5 (as control), 100, 300 or 500 μM Cu for 18 weeks in sandy culture or 24 h in hydroponics. At the end of treatments in the 18-week sandy culture, Cu toxicity on CW pectin content, Cu distribution, degree of pectin methylesterification (DPM) and the PME enzyme activity were discussed. At the genome-wide level, PME gene family was identified from the two citrus species, and qRT-PCR array of citrus PMEs under control and 300 μM Cu stress for 18 weeks were performed to screen the Cu-responsive PME genes. Moreover, the candidate genes that responded to Cu toxicity were further examined within 24 h. The results showed that Cu toxicity increased the root CW pectin content. The root CW pectin under Cu toxicity was remodeled by upregulation of the expression of the Cu-responsive PME genes followed by increasing PME activity, which mainly promoted low methylesterased pectin level and the Cu content on root CW pectin. Compared with C. sinensis, C. grandis root CW had a lower DPM and higher Cu content on the Cu-stressed root CW pectin, contributing to its higher Cu tolerance. Our present study provided theoretical evidence for root CW pectin remodeling in response to Cu toxicity of citrus species.
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Affiliation(s)
- Mei-Lan Lin
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
| | - Fei Lu
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
| | - Xin Zhou
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
| | - Xing Xiong
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
| | - Ning-Wei Lai
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
| | - Chen Li-Song
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
| | - Huang Zeng-Rong
- Department of Agricultural Resources and Environment, College of Resources and Environment, Fujian Agriculture and Forestry University, Shangxiadian Road, Cangshan District, Fuzhou 350002, China
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5
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Ofoe R, Thomas RH, Asiedu SK, Wang-Pruski G, Fofana B, Abbey L. Aluminum in plant: Benefits, toxicity and tolerance mechanisms. FRONTIERS IN PLANT SCIENCE 2023; 13:1085998. [PMID: 36714730 PMCID: PMC9880555 DOI: 10.3389/fpls.2022.1085998] [Citation(s) in RCA: 12] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/31/2022] [Accepted: 12/23/2022] [Indexed: 06/18/2023]
Abstract
Aluminum (Al) is the third most ubiquitous metal in the earth's crust. A decrease in soil pH below 5 increases its solubility and availability. However, its impact on plants depends largely on concentration, exposure time, plant species, developmental age, and growing conditions. Although Al can be beneficial to plants by stimulating growth and mitigating biotic and abiotic stresses, it remains unknown how Al mediates these effects since its biological significance in cellular systems is still unidentified. Al is considered a major limiting factor restricting plant growth and productivity in acidic soils. It instigates a series of phytotoxic symptoms in several Al-sensitive crops with inhibition of root growth and restriction of water and nutrient uptake as the obvious symptoms. This review explores advances in Al benefits, toxicity and tolerance mechanisms employed by plants on acidic soils. These insights will provide directions and future prospects for potential crop improvement.
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Affiliation(s)
- Raphael Ofoe
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Bible Hill, NS, Canada
| | - Raymond H. Thomas
- School of Science and the Environment, Memorial University of Newfoundland, Grenfell Campus, Corner Brook, NL, Canada
| | - Samuel K. Asiedu
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Bible Hill, NS, Canada
| | - Gefu Wang-Pruski
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Bible Hill, NS, Canada
| | - Bourlaye Fofana
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Bible Hill, NS, Canada
- Charlottetown Research and Development Centre, Agriculture and Agri-Food Canada, Charlottetown, PE, Canada
| | - Lord Abbey
- Department of Plant, Food, and Environmental Sciences, Faculty of Agriculture, Dalhousie University, Bible Hill, NS, Canada
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6
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Hajiboland R, Panda CK, Lastochkina O, Gavassi MA, Habermann G, Pereira JF. Aluminum Toxicity in Plants: Present and Future. JOURNAL OF PLANT GROWTH REGULATION 2022. [DOI: 10.1007/s00344-022-10866-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 10/26/2022] [Indexed: 06/23/2023]
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7
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Ren J, Yang X, Zhang N, Feng L, Ma C, Wang Y, Yang Z, Zhao J. Melatonin alleviates aluminum-induced growth inhibition by modulating carbon and nitrogen metabolism, and reestablishing redox homeostasis in Zea mays L. JOURNAL OF HAZARDOUS MATERIALS 2022; 423:127159. [PMID: 34537633 DOI: 10.1016/j.jhazmat.2021.127159] [Citation(s) in RCA: 25] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Revised: 08/30/2021] [Accepted: 09/04/2021] [Indexed: 05/11/2023]
Abstract
Melatonin, a regulatory molecule, performs pleiotropic functions in plants, including aluminum (Al) stress mitigation. Here, we conducted transcriptomic and physiological analyses to identify metabolic processes associated with the alleviated Al-induced growth inhibition of the melatonin-treated (MT) maize (Zea mays L.) seedlings. Melatonin decreased Al concentration in maize roots and leaves under Al stress. Al stress reduced the total dry weight (DW) by 41.2% after 7 days of treatment. By contrast, the total DW was decreased by only 19.4% in MT plants. According to RNA-Seq, enzyme activity, and metabolite content data, MT plants exhibited a higher level of relatively stable carbon and nitrogen metabolism than non-treated (NT) plants. Under Al stress, MT plants showed higher photosynthetic rate and sucrose content by 29.9% and 20.5% than NT plants, respectively. Similarly, the nitrate reductase activity and protein content of MT plants were 34.0% and 15.0% higher than those of NT plants, respectively. Furthermore, exogenous supply of melatonin mitigated Al-induced oxidative stress. Overall, our results suggest that melatonin alleviates aluminum-induced growth inhibition through modulating carbon and nitrogen metabolism, and reestablishing redox homeostasis in maize. Graphical Abstarct.
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Affiliation(s)
- Jianhong Ren
- College of Agriculture, Shanxi Agricultural University, Taigu, Shanxi 030800, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F University, Yangling, Shaanxi 712100, China; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Xiaoxiao Yang
- College of Agriculture, Shanxi Agricultural University, Taigu, Shanxi 030800, China; State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Institute of Soil and Water Conservation, Northwest A&F University, Yangling, Shaanxi 712100, China; College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Ning Zhang
- College of Life Sciences, Northwest A&F University, Yangling, Shaanxi 712100, China
| | - Lu Feng
- Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing 100093, China
| | - Chunying Ma
- College of Agriculture, Shanxi Agricultural University, Taigu, Shanxi 030800, China
| | - Yuling Wang
- College of Agriculture, Shanxi Agricultural University, Taigu, Shanxi 030800, China
| | - Zhenping Yang
- College of Agriculture, Shanxi Agricultural University, Taigu, Shanxi 030800, China.
| | - Juan Zhao
- College of Agriculture, Shanxi Agricultural University, Taigu, Shanxi 030800, China.
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AbdElgawad H, de Soua A, Alotaibi MO, Mohammed AE, Schoenaers S, Selim S, Saleh AM. The differential tolerance of C3 and C4 cereals to aluminum toxicity is faded under future CO 2 climate. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 169:249-258. [PMID: 34808467 DOI: 10.1016/j.plaphy.2021.11.018] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2021] [Revised: 11/04/2021] [Accepted: 11/11/2021] [Indexed: 06/13/2023]
Abstract
Industrial activities have led to a gradual and global increase in soil aluminum (Al) and atmospheric CO2 concentrations. Al bioavailability strongly depends on the soil pH, which in turn is affected by atmospheric CO2 levels. In spite of the concurrent impact which Al and elevated CO2 (eCO2) could have on plants, their interaction and how it might affect the growth of economically important crop species has not been investigated. Here, we have investigated the combined impact of soil Al and eCO2 exposure on key C3 (wheat, oat) and C4 (maize, sorghum) crops, at the physiological and biochemical level. Compared to C3 plants, C4 plants accumulated less Al by stimulating soil Al retention through exudation of root organic acids. Consequently, Al-exposed C4 plants maintained photosynthetic performance and anti-oxidative capacity. Exposure to eCO2 reduced the stress responses of C3 and C4 crops to Al exposure. Elevated CO2 decreased Al accumulation and oxidative damage in all cereals, and ameliorated C3 plant growth. This was reflected on the biochemical level, where eCO2 inhibited ROS production and restored RuBisCo activity in C3 crops only. Overall, our data suggest that, compared to C3 crops, C4 cereals are more tolerant to soil Al exposure under current ambient CO2 (aCO2) levels whereas future eCO2 levels might stimulate Al tolerance in C3 crops.
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Affiliation(s)
- Hamada AbdElgawad
- Laboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020, Antwerp, Belgium; Department of Botany and Microbiology, Faculty of Science, Beni-Suef University, 62521, Beni-Suef, Egypt.
| | - Alexandra de Soua
- Laboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020, Antwerp, Belgium
| | - Modhi O Alotaibi
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Afrah E Mohammed
- Department of Biology, College of Science, Princess Nourah bint Abdulrahman University, Riyadh, Saudi Arabia
| | - Sébastjen Schoenaers
- Laboratory for Integrated Molecular Plant Physiology Research (IMPRES), Department of Biology, University of Antwerp, B-2020, Antwerp, Belgium
| | - Samy Selim
- Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Jouf University, Sakaka 72341, Saudi Arabia
| | - Ahmed M Saleh
- Department of Botany and Microbiology, Faculty of Science, Cairo University, Giza, 12613, Egypt.
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Lin Y, Liu G, Xue Y, Guo X, Luo J, Pan Y, Chen K, Tian J, Liang C. Functional Characterization of Aluminum (Al)-Responsive Membrane-Bound NAC Transcription Factors in Soybean Roots. Int J Mol Sci 2021; 22:12854. [PMID: 34884659 PMCID: PMC8657865 DOI: 10.3390/ijms222312854] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 11/17/2021] [Accepted: 11/20/2021] [Indexed: 11/16/2022] Open
Abstract
The membrane-bound NAC transcription (NTL) factors have been demonstrated to participate in the regulation of plant development and the responses to multiple environmental stresses. This study is aimed to functionally characterize soybean NTL transcription factors in response to Al-toxicity, which is largely uncharacterized. The qRT-PCR assays in the present study found that thirteen out of fifteen GmNTL genes in the soybean genome were up-regulated by Al toxicity. However, among the Al-up-regulated GmNTLs selected from six duplicate gene pairs, only overexpressing GmNTL1, GmNTL4, and GmNTL10 could confer Arabidopsis Al resistance. Further comprehensive functional characterization of GmNTL4 showed that the expression of this gene in response to Al stress depended on root tissues, as well as the Al concentration and period of Al treatment. Overexpression of GmNTL4 conferred Al tolerance of transgenic Arabidopsis in long-term (48 and 72 h) Al treatments. Moreover, RNA-seq assay identified 517 DEGs regulated by GmNTL4 in Arabidopsis responsive to Al stress, which included MATEs, ALMTs, PMEs, and XTHs. These results suggest that the function of GmNTLs in Al responses is divergent, and GmNTL4 might confer Al resistance partially by regulating the expression of genes involved in organic acid efflux and cell wall modification.
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Affiliation(s)
- Yan Lin
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Guoxuan Liu
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Yingbing Xue
- Department of Resources and Environmental Sciences, College of Chemistry and Environment, Guangdong Ocean University, Zhanjiang 524088, China;
| | - Xueqiong Guo
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Jikai Luo
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Yaoliang Pan
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Kang Chen
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Jiang Tian
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
| | - Cuiyue Liang
- Root Biology Center, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, South China Agricultural University, Guangzhou 510642, China; (Y.L.); (G.L.); (X.G.); (J.L.); (Y.P.); (K.C.); (J.T.)
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10
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Uncovering the transcriptional response of popcorn (Zea mays L. var. everta) under long-term aluminum toxicity. Sci Rep 2021; 11:19644. [PMID: 34608228 PMCID: PMC8490451 DOI: 10.1038/s41598-021-99097-z] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2021] [Accepted: 09/20/2021] [Indexed: 11/21/2022] Open
Abstract
To date, the investigation of genes involved in Al resistance has focused mainly on microarrays and short periods of Al exposure. We investigated genes involved in the global response under Al stress by tracking the expression profile of two inbred popcorn lines with different Al sensitivity during 72 h of Al stress. A total of 1003 differentially expressed genes were identified in the Al-sensitive line, and 1751 were identified in the Al-resistant line, of which 273 were shared in both lines. Genes in the category of “response to abiotic stress” were present in both lines, but there was a higher number in the Al-resistant line. Transcription factors, genes involved in fatty acid biosynthesis, and genes involved in cell wall modifications were also detected. In the Al-resistant line, GST6 was identified as one of the key hub genes by co-expression network analysis, and ABC6 may play a role in the downstream regulation of CASP-like 5. In addition, we suggest a class of SWEET transporters that might be involved in the regulation of vacuolar sugar storage and may serve as mechanisms for Al resistance. The results and conclusions expand our understanding of the complex mechanisms involved in Al toxicity and provide a platform for future functional analyses and genomic studies of Al stress in popcorn.
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Szurman-Zubrzycka M, Chwiałkowska K, Niemira M, Kwaśniewski M, Nawrot M, Gajecka M, Larsen PB, Szarejko I. Aluminum or Low pH - Which Is the Bigger Enemy of Barley? Transcriptome Analysis of Barley Root Meristem Under Al and Low pH Stress. Front Genet 2021; 12:675260. [PMID: 34220949 PMCID: PMC8244595 DOI: 10.3389/fgene.2021.675260] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Accepted: 04/13/2021] [Indexed: 11/13/2022] Open
Abstract
Aluminum (Al) toxicity is considered to be the most harmful abiotic stress in acidic soils that today comprise more than 50% of the world’s arable lands. Barley belongs to a group of crops that are most sensitive to Al in low pH soils. We present the RNA-seq analysis of root meristems of barley seedlings grown in hydroponics at optimal pH (6.0), low pH (4.0), and low pH with Al (10 μM of bioavailable Al3+ ions). Two independent experiments were conducted: with short-term (24 h) and long-term (7 days) Al treatment. In the short-term experiment, more genes were differentially expressed (DEGs) between root meristems grown at pH = 6.0 and pH = 4.0, than between those grown at pH = 4.0 with and without Al treatment. The genes upregulated by low pH were associated mainly with response to oxidative stress, cell wall organization, and iron ion binding. Among genes upregulated by Al, overrepresented were those related to response to stress condition and calcium ion binding. In the long-term experiment, the number of DEGs between hydroponics at pH = 4.0 and 6.0 were lower than in the short-term experiment, which suggests that plants partially adapted to the low pH. Interestingly, 7 days Al treatment caused massive changes in the transcriptome profile. Over 4,000 genes were upregulated and almost 2,000 genes were downregulated by long-term Al stress. These DEGs were related to stress response, cell wall development and metal ion transport. Based on our results we can assume that both, Al3+ ions and low pH are harmful to barley plants. Additionally, we phenotyped the root system of barley seedlings grown in the same hydroponic conditions for 7 days at pH = 6.0, pH = 4.0, and pH = 4.0 with Al. The results correspond to transcriptomic data and show that low pH itself is a stress factor that causes a significant reduction of root growth and the addition of aluminum further increases this reduction. It should be noted that in acidic arable lands, plants are exposed simultaneously to both of these stresses. The presented transcriptome analysis may help to find potential targets for breeding barley plants that are more tolerant to such conditions.
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Affiliation(s)
- Miriam Szurman-Zubrzycka
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Karolina Chwiałkowska
- Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, Bialystok, Poland
| | - Magdalena Niemira
- Clinical Research Centre, Medical University of Bialystok, Bialystok, Poland
| | - Mirosław Kwaśniewski
- Centre for Bioinformatics and Data Analysis, Medical University of Bialystok, Bialystok, Poland
| | - Małgorzata Nawrot
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Monika Gajecka
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
| | - Paul B Larsen
- Department of Biochemistry, University of California, Riverside, Riverside, CA, United States
| | - Iwona Szarejko
- Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Katowice, Poland
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Awasthi JP, Kusunoki K, Saha B, Kobayashi Y, Koyama H, Panda SK. Comparative RNA-Seq analysis of the root revealed transcriptional regulation system for aluminum tolerance in contrasting indica rice of North East India. PROTOPLASMA 2021; 258:517-528. [PMID: 33184696 DOI: 10.1007/s00709-020-01581-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/22/2020] [Accepted: 10/28/2020] [Indexed: 06/11/2023]
Abstract
Expression pattern of aluminum (Al) tolerance genes is one of the major determinants of Al avoidance/tolerance within plant cultivars. We have performed transcriptome analysis of two contrasting (Al-tolerant, Disang; Al-sensitive, Joymati) cultivars of India's North Eastern region, an indica rice diversity hotspot, on exposure to excess Al3+ treatment in acidic condition. Co-expression analysis and SNPs enrichment analysis proposed the role of both trans-acting and cis-acting polymorphisms in Al signaling in the Al-tolerant cultivar. We proposed ten major genes, including arginine decarboxylase, phytase, and beta-glucosidase aggregating factor as candidates responsible for Al tolerance based on transcriptome analysis. Al3+ stress led to changes in the alternative splicing profile of the Al-tolerant cultivar. These studies demonstrated the transcriptional variations affiliated to Al avoidance/tolerance in contrasting indica rice of North East India and provided us with several candidate genes responsible for Al tolerance.
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Affiliation(s)
- Jay Prakash Awasthi
- Plant Molecular Biotechnology Laboratory, Department of Life Science and Bioinformatics, Assam University, Silchar, Assam, 788011, India
| | - Kazutaka Kusunoki
- Plant Cell Technology Laboratory, Faculty of Applied Biological Sciences, Gifu University, Gifu, 5011193, Japan
| | - Bedabrata Saha
- Plant Molecular Biotechnology Laboratory, Department of Life Science and Bioinformatics, Assam University, Silchar, Assam, 788011, India
- School of Biological Sciences, National Institute of Science Education and Research, Jatni, Odisha, 752050, India
| | - Yuriko Kobayashi
- Plant Cell Technology Laboratory, Faculty of Applied Biological Sciences, Gifu University, Gifu, 5011193, Japan
| | - Hiroyuki Koyama
- Plant Cell Technology Laboratory, Faculty of Applied Biological Sciences, Gifu University, Gifu, 5011193, Japan
| | - Sanjib Kumar Panda
- Plant Molecular Biotechnology Laboratory, Department of Life Science and Bioinformatics, Assam University, Silchar, Assam, 788011, India.
- Department of Biochemistry, Central University of Rajasthan, Bandarsindri, Ajmer, 305817, India.
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13
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Molecular Mechanisms Underlying Sugarcane Response to Aluminum Stress by RNA-Seq. Int J Mol Sci 2020; 21:ijms21217934. [PMID: 33114621 PMCID: PMC7672567 DOI: 10.3390/ijms21217934] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2020] [Revised: 10/06/2020] [Accepted: 10/08/2020] [Indexed: 11/16/2022] Open
Abstract
Some metals are beneficial to plants and contribute to critical physiological processes. Some metals, however, are not. The presence of aluminum ions (Al3+) can be very toxic, especially in acidic soils. Considerable parts of the world's arable land are acidic in nature; mechanistically elucidating a plant's response to aluminum stress is critical to mitigating this stress and improving the quality of plants. To identify the genes involved in sugarcane response to aluminum stress, we generated 372 million paired-end RNA sequencing reads from the roots of CTC-2 and RB855453, which are two contrasting cultivars. Data normalization resulted in 162,161 contigs (contiguous sequences) and 97,335 genes from a de novo transcriptome assembly (trinity genes). A total of 4858 and 1307 differently expressed genes (DEGs) for treatment versus control were identified for the CTC-2 and RB855453 cultivars, respectively. The DEGs were annotated into 34 functional categories. The majority of the genes were upregulated in the CTC-2 (tolerant cultivar) and downregulated in RB855453 (sensitive cultivar). Here, we present the first root transcriptome of sugarcane under aluminum stress. The results and conclusions of this study are a crucial launch pad for future genetic and genomic studies of sugarcane. The transcriptome analysis shows that sugarcane tolerance to aluminum may be explained by an efficient detoxification mechanism combined with lateral root formation and activation of redox enzymes. We also present a hypothetical model for aluminum tolerance in the CTC-2 cultivar.
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Vera-Villalobos H, Lunario-Delgado L, Pérez-Retamal D, Román D, Leiva JC, Zamorano P, Mercado-Seguel A, Gálvez AS, Benito C, Wulff-Zottele C. Sulfate nutrition improves short-term Al 3+-stress tolerance in roots of Lolium perenne L. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2020; 148:103-113. [PMID: 31954280 DOI: 10.1016/j.plaphy.2020.01.011] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/29/2019] [Revised: 01/08/2020] [Accepted: 01/08/2020] [Indexed: 06/10/2023]
Abstract
Trivalent aluminum ions (Al3+) in acidic soils are a major constraint for crop productivity inhibiting root elongation and promoting cell death. Al3+-toxicity has adverse biochemical and physiological effects on plant root growth. Sulfur is an essential macronutrient assimilated from the soil in the form of sulfate. However, the implication of sulfate nutritional status in the modulation of short-term Al3+-tolerance mechanisms in plant roots has not been previously reported. Here, we evaluated the effects of increased sulfate supply on short-term Al3+-toxicity in roots of Lolium perenne, measuring Al, Ca, Mg and S uptake, lipid peroxidation, total SOD activity, and transcriptional levels of Cu/Zn and Fe-SOD genes. First, the nitrogen sulfur ratio (N/S) in the TF nutrient solutions used in this study were computed to confirm that L. perenne plants were grown in sulfate deficiency (120 μM), optimal supply (240 μM), or overdoses conditions (360 μM), without affecting dry root biomass. Sulfate supplementation (>240 μM, and N/S ratio < 16) played a significant protection to Al3+-stress that prevents morphological changes in root tips, inhibits lipid peroxidation and differentially up-regulates total SOD activity, due changes in SOD gene expression. The results support the importance of sulfate nutritional status, on plant tissue homeostasis, enhancing the physiological tolerance mechanisms modulating lipid peroxidation damage induced by short-term Al3+-toxicity.
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Affiliation(s)
- Hernán Vera-Villalobos
- Programa de Doctorado en Ciencias Biológicas, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile.
| | - Lizzeth Lunario-Delgado
- Programa de Magister en Biotecnología, Departamento de Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile.
| | - Diana Pérez-Retamal
- Carrera de Bioquímica, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile.
| | - Domingo Román
- Departamento de Química, Universidad de Antofagasta, Antofagasta, Chile.
| | - Juan Carlos Leiva
- Programa de Doctorado en Ciencias Biológicas, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile.
| | - Pedro Zamorano
- Departamento Biomédico, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile; Instituto Antofagasta, Universidad de Antofagasta, Antofagasta, Chile.
| | - Ana Mercado-Seguel
- Departamento Biotecnología, Facultad de Ciencias del Mar y Recursos Biológicos, Universidad de Antofagasta, Antofagasta, Chile.
| | - Anita S Gálvez
- Departamento Biomédico, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile.
| | - Cesar Benito
- Departamento de Genética, Fisiología y Microbiología, Universidad Complutense de Madrid, Madrid, Spain.
| | - Cristián Wulff-Zottele
- Departamento Biomédico, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Antofagasta, Chile.
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Ozyigit II, Kaval A, Altundag Cakir E, Vardar F. DNA fingerprinting and assessment of some physiological changes in Al-induced Bryophyllum daigremontianum clones. Mol Biol Rep 2019; 46:2703-2711. [PMID: 30911971 DOI: 10.1007/s11033-019-04714-w] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/24/2018] [Accepted: 02/20/2019] [Indexed: 11/29/2022]
Abstract
Aluminum (Al) is one of the most important stress factors that reduce plant productivity in acidic soils. Present work thereby analyzed Al-induced genomic alterations in Bryophyllum daigremontianum clones using RAPD and ISSR markers, and investigated responding changes in photosynthetic pigment (chlorophyll a, b, a/b, total chlorophyll and carotenoid) contents and total soluble protein amounts in plant leaves. The main reason for the use of bulbiferous spurs originated clone plants was to increase reliability and acceptability of RAPD and ISSR techniques in DNA fingerprinting. Raised 40 clone plants were divided into five separate groups each with eight individuals and each experimental group was watered with 0 (control), 0 (acid control), 50, 100 and 200 µM AlCl3-containing Hoagland solutions on alternate days for two and a half months. All plant soils except control group were sprayed with 0.2% sulfuric acid following watering days and this contributed acidic characteristic (pH 4.8) to soil structure. Increase in Al concentrations were accompanied by an increase in total soluble protein amounts, a decrease in photosynthetic pigment contents, and with appearance, disappearance and intensity changes at RAPD and ISSR band profiles. Out of tested RAPD1-25 and ISSR1-15 primers, RAPD8, RAPD9, ISSR2 and ISSR7 primers produced reproducible band profiles that were distinguishable between treatment and control groups. Findings showed that RAPD and ISSR fingerprints have been useful biomarkers for investigation of plant genotoxicity, especially in clone plants. Moreover, if these fingerprints are integrated with other physiological parameters they could become more powerful tools in ecotoxicology.
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Affiliation(s)
- Ibrahim Ilker Ozyigit
- Department of Biology, Faculty of Science and Arts, Marmara University, Istanbul, Turkey. .,Department of Biology, Faculty of Science, Kyrgyz-Turkish Manas University, Bishkek, Kyrgyzstan.
| | - Ali Kaval
- Department of Biology, Faculty of Science and Arts, Duzce University, Duzce, Turkey
| | - Ernaz Altundag Cakir
- Department of Biology, Faculty of Science and Arts, Duzce University, Duzce, Turkey
| | - Filiz Vardar
- Department of Biology, Faculty of Science and Arts, Marmara University, Istanbul, Turkey
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Riaz M, Yan L, Wu X, Hussain S, Aziz O, Jiang C. Mechanisms of organic acids and boron induced tolerance of aluminum toxicity: A review. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2018; 165:25-35. [PMID: 30173023 DOI: 10.1016/j.ecoenv.2018.08.087] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Revised: 08/16/2018] [Accepted: 08/23/2018] [Indexed: 05/24/2023]
Abstract
Aluminum is a major limiting abiotic factor for plant growth and productivity on acidic soils. The primary disorder of aluminum toxicity is the rapid cessation of root elongation. The root apex is the most sensitive part of this organ. Although significant literature evidence and hypothesis exist on aluminum toxicity, the explicit mechanism through which aluminum ceases root growth is still indefinable. The mechanisms of tolerance in plants have been the focus of intense research. Some plant species growing on acidic soils have developed tolerance mechanisms to overcome and mitigate aluminum toxicity, either by avoiding entry of Al3+ into roots (exclusion mechanism) or by being able to counterbalance toxic Al3+ engrossed by the root system (internal tolerance mechanism). Genes belonging to ALMT (Aluminum-activated malate transporter) and MATE (Multidrug and toxin compounds extrusion) have been identified that are involved in the aluminum-activated secretion of organic acids from roots. However, different plant species show different gene expression pattern. On the other hand, boron (B) (indispensable micronutrient) is a promising nutrient in the tolerance to aluminum toxicity. It not only hinders the adsorption of aluminum to the cell wall but also improves plant growth. This review mainly explains the critical roles of organic acid and B-induced tolerance to aluminum by summarizing the mechanisms of ALMT, MATE, internal detoxification, molecular traits and genetic engineering of crops.
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Affiliation(s)
- Muhammad Riaz
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Lei Yan
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Xiuwen Wu
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Saddam Hussain
- Department of Agronomy, University of Agriculture Faisalabad, 38040 Punjab, Pakistan
| | - Omar Aziz
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China
| | - Cuncang Jiang
- Microelement Research Center, College of Resources and Environment, Huazhong Agricultural University, Wuhan, Hubei 430070, PR China.
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17
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Gao J, Yan S, Yu H, Zhan M, Guan K, Wang Y, Yang Z. Sweet sorghum (Sorghum bicolor L.) SbSTOP1 activates the transcription of a β-1,3-glucanase gene to reduce callose deposition under Al toxicity: A novel pathway for Al tolerance in plants. Biosci Biotechnol Biochem 2018; 83:446-455. [PMID: 30387379 DOI: 10.1080/09168451.2018.1540290] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
Aluminum (Al) toxicity is a primary limiting factor for crop production in acid soils. Callose deposition, an early indicator and likely a contributor to Al toxicity, is induced rapidly in plant roots under Al stress. SbGlu1, encoding a β-1,3-glucanase for callose degradation, showed important roles in sorghum Al resistance, yet its regulatory mechanisms remain unclear. The STOP1 transcription factors mediate Al signal transduction in various plants. Here, we identified their homolog in sweet sorghum, SbSTOP1, transcriptionally activated the expression of SbGlu1. Moreover, the DNA sequence recognized by SbSTOP1 on the promoter of SbGlu1 lacked the reported cis-acting element. Complementation lines of Atstop1 with SbSTOP1 revealed enhanced transcription levels of SbGlu1 homologous gene and reduced callose accumulation in Arabidopsis. These results indicate, for the first time, that SbSTOP1 is involved in the modulation of callose deposition under Al stress via transcriptional regulation of a β-1,3-glucanase gene.
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Affiliation(s)
- Jie Gao
- a Jilin Province Engineering Laboratory of Plant Genetic Improvement, College of Plant Science , Jilin University , Changchun , China.,b College of Biological and Agricultural Engineering , Jilin University , Changchun , China
| | - Siqi Yan
- a Jilin Province Engineering Laboratory of Plant Genetic Improvement, College of Plant Science , Jilin University , Changchun , China
| | - Haiye Yu
- b College of Biological and Agricultural Engineering , Jilin University , Changchun , China
| | - Meiqi Zhan
- a Jilin Province Engineering Laboratory of Plant Genetic Improvement, College of Plant Science , Jilin University , Changchun , China
| | - Kexing Guan
- a Jilin Province Engineering Laboratory of Plant Genetic Improvement, College of Plant Science , Jilin University , Changchun , China
| | - Yanqiu Wang
- a Jilin Province Engineering Laboratory of Plant Genetic Improvement, College of Plant Science , Jilin University , Changchun , China
| | - Zhenming Yang
- a Jilin Province Engineering Laboratory of Plant Genetic Improvement, College of Plant Science , Jilin University , Changchun , China
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18
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Liu W, Xu F, Lv T, Zhou W, Chen Y, Jin C, Lu L, Lin X. Spatial responses of antioxidative system to aluminum stress in roots of wheat (Triticum aestivum L.) plants. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 627:462-469. [PMID: 29426169 DOI: 10.1016/j.scitotenv.2018.01.021] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/29/2017] [Revised: 01/03/2018] [Accepted: 01/03/2018] [Indexed: 05/20/2023]
Abstract
Aluminum (Al) toxicity associated with acid soils represents one of the biggest limitations to crop production worldwide. The root apex of plants is the major perception site of Al toxicity. In Al stressed wheat primary roots, Al accumulation and loss of plasma membrane integrity were highest in the root apex (0-5mm), and decreased along the root axis (5-25mm). To further understand these responses in wheat, spatial profiles of antioxidant responses to Al along the 0-25mm root tip of two wheat genotypes differing in Al tolerance were analyzed. Under Al stress, the lowest root elongation was in the 0-5mm root tip, and more severe inhibition was observed in Al-sensitive genotype than Al-tolerant genotype. The highest increase of Al and hydrogen peroxide (H2O2) was in the 0-5mm zone, with the most pronounced increase of malondialdehyde content and Evans blue uptake after Al exposure, especially in Al-sensitive genotype. The activities of superoxides dismutase (SOD), ascrobate peroxidase (APX), catalase (CAT) and peroxidase (POD) and levels of antioxidants (ascorbic acid, reduced glutathione, dehydroascorbate, glutathione disulfide) were significantly increased along the root tip under Al stress, with the 0-5mm region again being the most active zone. In the same zone, the activities of CAT, APX and contents of antioxidants were higher in Al-tolerant genotype while SOD and POD activities were lower. Our results indicate that Al-induced changes in H2O2 production and antioxidative system in root tip are regulated in a spatially-specific manner, suggesting that this response may play an important role in wheat adaptation to Al toxicity.
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Affiliation(s)
- Wenjing Liu
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Fangjie Xu
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Ting Lv
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Weiwei Zhou
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Yao Chen
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Chongwei Jin
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Key Laboratory of Subtropical Soil Science and Plant Nutrition, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Lingli Lu
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Key Laboratory of Subtropical Soil Science and Plant Nutrition, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China
| | - Xianyong Lin
- MoEKey Laboratory of Environmental Remediation and Ecosystem Health, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Key Laboratory of Subtropical Soil Science and Plant Nutrition, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China.
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Arroyave C, Tolrà R, Chaves L, de Souza MC, Barceló J, Poschenrieder C. A proteomic approach to the mechanisms underlying activation of aluminium resistance in roots of Urochloa decumbens. J Inorg Biochem 2018; 181:145-151. [DOI: 10.1016/j.jinorgbio.2017.09.010] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Revised: 09/08/2017] [Accepted: 09/09/2017] [Indexed: 11/25/2022]
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20
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Huang SC, Chu SJ, Guo YM, Ji YJ, Hu DQ, Cheng J, Lu GH, Yang RW, Tang CY, Qi JL, Yang YH. Novel mechanisms for organic acid-mediated aluminium tolerance in roots and leaves of two contrasting soybean genotypes. AOB PLANTS 2017; 9:plx064. [PMID: 29302304 PMCID: PMC5739043 DOI: 10.1093/aobpla/plx064] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/28/2017] [Accepted: 11/14/2017] [Indexed: 05/29/2023]
Abstract
Aluminium (Al) toxicity is one of the most important limiting factors for crop yield in acidic soils. However, the mechanisms that confer Al tolerance still remain largely unknown. To understand the molecular mechanism that confers different tolerance to Al, we performed global transcriptome analysis to the roots and leaves of two contrasting soybean genotypes, BX10 (Al-tolerant) and BD2 (Al-sensitive) under 0 and 50 μM Al3+ treatments, respectively. Gene Ontology and Kyoto Encyclopedia of Genes and Genomes analyses revealed that the expression levels of the genes involved in lipid/carbohydrate metabolism and jasmonic acid (JA)-mediated signalling pathway were highly induced in the roots and leaves of both soybean genotypes. The gene encoding enzymes, including pyruvate kinase, phosphoenolpyruvate carboxylase, ATP-citrate lyase and glutamate-oxaloacetate transaminase 2, associated with organic acid metabolism were differentially expressed in the BX10 roots. In addition, the genes involved in citrate transport were differentially expressed. Among these genes, FRD3b was down-regulated only in BD2, whereas the other two multidrug and toxic compound extrusion genes were up-regulated in both soybean genotypes. These findings confirmed that BX10 roots secreted more citrate than BD2 to withstand Al stress. The gene encoding enzymes or regulators, such as lipoxygenase, 12-oxophytodienoate reductase, acyl-CoA oxidase and jasmonate ZIM-domain proteins, involved in JA biosynthesis and signalling were preferentially induced in BD2 leaves. This finding suggests that the JA defence response was activated, possibly weakening the growth of aerial parts because of excessive resource consumption and ATP biosynthesis deficiency. Our results suggest that the Al sensitivity in some soybean varieties could be attributed to the low level of citrate metabolism and exudation in the roots and the high level of JA-mediated defence response in the leaves.
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Affiliation(s)
- Shou-Cheng Huang
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
- College of Life Science, Anhui Science and Technology University, Fengyang, China
| | - Shu-Juan Chu
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Yu-Min Guo
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Ya-Jing Ji
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Dong-Qing Hu
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Jing Cheng
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Gui-Hua Lu
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Rong-Wu Yang
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Cheng-Yi Tang
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Jin-Liang Qi
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
| | - Yong-Hua Yang
- Institute of Plant Molecular Biology, State Key Laboratory of Pharmaceutical Biotechnology, School of Life Sciences, Nanjing University, Nanjing, China
- Jiangsu Collaborative Innovation Center for Modern Crop, Nanjing Agricultural University, Nanjing, China
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21
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Li D, Shu Z, Ye X, Zhu J, Pan J, Wang W, Chang P, Cui C, Shen J, Fang W, Zhu X, Wang Y. Cell wall pectin methyl-esterification and organic acids of root tips involve in aluminum tolerance in Camellia sinensis. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2017; 119:265-274. [PMID: 28917145 DOI: 10.1016/j.plaphy.2017.09.002] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2017] [Revised: 09/05/2017] [Accepted: 09/05/2017] [Indexed: 05/21/2023]
Abstract
Tea plant (Camellia sinensis (O.) Kuntze) can survive from high levels of aluminum (Al) in strongly acidic soils. However, the mechanism driving its tolerance to Al, the predominant factor limiting plant growth in acid condition, is still not fully understood. Here, two-year-old rooted cuttings of C. sinensis cultivar 'Longjingchangye' were used for Al resistance experiments. We found that the tea plants grew better in the presence of 0.4 mM Al than those grew under lower concentration of Al treatments (0 and 0.1 mM) as well as higher levels treatment (2 and 4 mM), confirming that appropriate Al increased tea plant growth. Hematoxylin staining assay showed that the apical region was the main accumulator in tea plant root. Subsequently, immunolocalization of pectins in the root tip cell wall showed a rise in low-methyl-ester pectin levels and a reduction of high-methyl-ester pectin content with the increasing Al concentration of treatments. Furthermore, we observed the increased expressions of C. sinensis pectin methylesterase (CsPME) genes along with the increasing de-esterified pectin levels during response to Al treatments. Additionally, the levels of organic acids increased steadily after treatment with 0.1, 0.4 or 2 mM Al, while they dropped after treatment with 4 mM Al. The organic acids secretion from root followed a similar trend. Similarly, a gradual increase in malate dehydrogenase (MDH), citrate synthase (CS) and glycolate oxidase (GO) enzyme activities and relevant metabolic genes expression were detected after the treatment of 0.1, 0.4 or 2 mM Al, while a sharp decrease was resulted from treatment with 4 mM Al. These results confirm that both pectin methylesterases and organic acids contribute to Al tolerance in C. sinensis.
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Affiliation(s)
- Dongqin Li
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Zaifa Shu
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Xiaoli Ye
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Jiaojiao Zhu
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Junting Pan
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Weidong Wang
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China; College of Horticulture, Northwest A&F University, Yangling 712100, Shaanxi, China.
| | - Pinpin Chang
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Chuanlei Cui
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Jiazhi Shen
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Wanping Fang
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Xujun Zhu
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
| | - Yuhua Wang
- College of Horticulture, Nanjing Agricultural University, Nanjing 210095, China.
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22
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Arbelaez JD, Maron LG, Jobe TO, Piñeros MA, Famoso AN, Rebelo AR, Singh N, Ma Q, Fei Z, Kochian LV, McCouch SR. ALUMINUM RESISTANCE TRANSCRIPTION FACTOR 1 ( ART1) contributes to natural variation in aluminum resistance in diverse genetic backgrounds of rice ( O. sativa). PLANT DIRECT 2017; 1:e00014. [PMID: 31245663 PMCID: PMC6508803 DOI: 10.1002/pld3.14] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/20/2017] [Revised: 08/22/2017] [Accepted: 09/01/2017] [Indexed: 05/13/2023]
Abstract
Transcription factors (TFs) regulate the expression of other genes to indirectly mediate stress resistance mechanisms. Therefore, when studying TF-mediated stress resistance, it is important to understand how TFs interact with genes in the genetic background. Here, we fine-mapped the aluminum (Al) resistance QTL Alt12.1 to a 44-kb region containing six genes. Among them is ART1, which encodes a C2H2-type zinc finger TF required for Al resistance in rice. The mapping parents, Al-resistant cv Azucena (tropical japonica) and Al-sensitive cv IR64 (indica), have extensive sequence polymorphism within the ART1 coding region, but similar ART1 expression levels. Using reciprocal near-isogenic lines (NILs) we examined how allele-swapping the Alt12.1 locus would affect plant responses to Al. Analysis of global transcriptional responses to Al stress in roots of the NILs alongside their recurrent parents demonstrated that the presence of the Alt12.1 from Al-resistant Azucena led to greater changes in gene expression in response to Al when compared to the Alt12.1 from IR64 in both genetic backgrounds. The presence of the ART1 allele from the opposite parent affected the expression of several genes not previously implicated in rice Al tolerance. We highlight examples where putatively functional variation in cis-regulatory regions of ART1-regulated genes interacts with ART1 to determine gene expression in response to Al. This ART1-promoter interaction may be associated with transgressive variation for Al resistance in the Azucena × IR64 population. These results illustrate how ART1 interacts with the genetic background to contribute to quantitative phenotypic variation in rice Al resistance.
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Affiliation(s)
- Juan D. Arbelaez
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
- Present address:
Plant BreedingInternational Rice Research InstituteLos BañosPhilippines
| | - Lyza G. Maron
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
| | - Timothy O. Jobe
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
- Boyce Thompson InstituteCornell UniversityIthacaNYUSA
- Present address:
Botanical InstituteUniversity of CologneCologneGermany
| | - Miguel A. Piñeros
- Robert W. Holley Center for Agriculture and HealthUSDA‐ARSCornell UniversityIthacaNYUSA
| | - Adam N. Famoso
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
- Present address:
LSU AgCenterH. Rouse Caffey Rice Research StationRayneLAUSA
| | - Ana Rita Rebelo
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
- Present address:
Boyce Thompson InstituteCornell UniversityIthacaNYUSA
| | - Namrata Singh
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
| | - Qiyue Ma
- Boyce Thompson InstituteCornell UniversityIthacaNYUSA
| | - Zhangjun Fei
- Boyce Thompson InstituteCornell UniversityIthacaNYUSA
| | - Leon V. Kochian
- Robert W. Holley Center for Agriculture and HealthUSDA‐ARSCornell UniversityIthacaNYUSA
- Present address:
Global Institute for Food SecurityUniversity of SaskatchewanSaskatoonSKCanada
| | - Susan R. McCouch
- Plant Breeding and Genetics SectionSchool of Integrative Plant ScienceCornell UniversityIthacaNYUSA
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23
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Geng X, Horst WJ, Golz JF, Lee JE, Ding Z, Yang ZB. LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2017; 90:491-504. [PMID: 28181322 DOI: 10.1111/tpj.13506] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/08/2016] [Revised: 01/22/2017] [Accepted: 01/25/2017] [Indexed: 05/24/2023]
Abstract
A major factor determining aluminium (Al) sensitivity in higher plants is the binding of Al to root cell walls. The Al binding capacity of cell walls is closely linked to the extent of pectin methylesterification, as the presence of methyl groups attached to the pectin backbone reduces the net negative charge of this polymer and hence limits Al binding. Despite recent progress in understanding the molecular basis of Al resistance in a wide range of plants, it is not well understood how the methylation status of pectin is mediated in response to Al stress. Here we show in Arabidopsis that mutants lacking the gene LEUNIG_HOMOLOG (LUH), a member of the Groucho-like family of transcriptional co-repressor, are less sensitive to Al-mediated repression of root growth. This phenotype is correlated with increased levels of methylated pectin in the cell walls of luh roots as well as altered expression of cell wall-related genes. Among the LUH-repressed genes, PECTIN METHYLESTERASE46 (PME46) was identified as reducing Al binding to cell walls and hence alleviating Al-induced root growth inhibition by decreasing PME enzyme activity. seuss-like2 (slk2) mutants responded to Al in a similar way as luh mutants suggesting that a LUH-SLK2 complex represses the expression of PME46. The data are integrated into a model in which it is proposed that PME46 is a major inhibitor of pectin methylesterase activity within root cell walls.
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Affiliation(s)
- Xiaoyu Geng
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan, 250100, China
| | - Walter J Horst
- Institute of Plant Nutrition, Leibniz Universität Hannover, Herrenhaeuser Str. 2, Hannover, 30419, Germany
| | - John F Golz
- School of BioSciences, University of Melbourne, Victoria, 3010, Australia
| | - Joanne E Lee
- Umeå Plant Science Centre, Department of Plant Physiology, Umeå University, Umeå, SE-901 87, Sweden
| | - Zhaojun Ding
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan, 250100, China
| | - Zhong-Bao Yang
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan, 250100, China
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24
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Guo P, Qi YP, Yang LT, Lai NW, Ye X, Yang Y, Chen LS. Root Adaptive Responses to Aluminum-Treatment Revealed by RNA-Seq in Two Citrus Species With Different Aluminum-Tolerance. FRONTIERS IN PLANT SCIENCE 2017; 8:330. [PMID: 28337215 PMCID: PMC5340773 DOI: 10.3389/fpls.2017.00330] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/24/2016] [Accepted: 02/24/2017] [Indexed: 05/02/2023]
Abstract
Seedlings of aluminum (Al)-tolerant Citrus sinensis and Al-intolerant Citrus grandis were fertigated daily with nutrient solution containing 0 and 1.0 mM AlCl3●6H2O for 18 weeks. The Al-induced decreases of biomass and root total soluble proteins only occurred in C. grandis, demonstrating that C. sinensis had higher Al-tolerance than C. grandis. Under Al-treatment, C. sinensis roots secreted more citrate and malate than C. grandis ones; less Al was accumulated in C. sinenis than in C. grandis leaves. The Al-induced reduction of phosphorus was lesser in C. sinensis roots and leaves than in C. grandis ones, whereas the Al-induced increase of sulfur was greater in C. sinensis roots and leaves. Using RNA-seq, we isolated 1905 and 2670 differentially expressed genes (DEGs) from Al-treated C. sinensis than C. grandis roots, respectively. Among these DEGs, only 649 DEGs were shared by the two species. Further analysis suggested that the following several aspects conferred C. sinensis higher Al-tolerance: (a) Al-treated C. sinensis seedlings had a higher external Al detoxification capacity via enhanced Al-induced secretion of organic acid anions, a higher antioxidant capacity and a more efficient chelation system in roots; (b) Al-treated C. sinensis seedlings displayed a higher level of sulfur in roots and leaves possibly due to increased uptake and decreased export of sulfur and a higher capacity to maintain the cellular phosphorus homeostasis by enhancing phosphorus acquisition and utilization; (c) Cell wall and cytoskeleton metabolism, energy and carbohydrate metabolism and signal transduction displayed higher adaptative responses to Al in C. sinensis than in C. grandis roots; (d) More upregulated than downregulated genes related to fatty acid and amino acid metabolisms were isolated from Al-treated C. sinensis roots, but the reverse was the case for Al-treated C. grandis roots. These results provide a platform for further investigating the roles of genes possibly responsible for citrus Al-tolerance.
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Affiliation(s)
- Peng Guo
- Institute of Plant Nutritional Physiology and Molecular Biology, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Yi-Ping Qi
- Institute of Materia Medica, Fujian Academy of Medical SciencesFuzhou, China
| | - Lin-Tong Yang
- Institute of Plant Nutritional Physiology and Molecular Biology, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Ning-Wei Lai
- Institute of Plant Nutritional Physiology and Molecular Biology, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Xin Ye
- Institute of Plant Nutritional Physiology and Molecular Biology, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Yi Yang
- Institute of Plant Nutritional Physiology and Molecular Biology, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
| | - Li-Song Chen
- Institute of Plant Nutritional Physiology and Molecular Biology, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
- Fujian Provincial Key Laboratory of Soil Environmental Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
- The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, College of Resources and Environment, Fujian Agriculture and Forestry UniversityFuzhou, China
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25
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Liu W, Xiong C, Yan L, Zhang Z, Ma L, Wang Y, Liu Y, Liu Z. Transcriptome Analyses Reveal Candidate Genes Potentially Involved in Al Stress Response in Alfalfa. FRONTIERS IN PLANT SCIENCE 2017; 8:26. [PMID: 28217130 PMCID: PMC5290290 DOI: 10.3389/fpls.2017.00026] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/04/2016] [Accepted: 01/05/2017] [Indexed: 05/23/2023]
Abstract
Alfalfa is the most extensively cultivated forage legume, yet most alfalfa cultivars are not aluminum tolerant, and the molecular mechanisms underlying alfalfa responses to Al stress are largely unknown. In this study, we aimed to understand how alfalfa responds to Al stress by identifying and analyzing Al-stress-responsive genes in alfalfa roots at the whole-genome scale. The transcriptome changes in alfalfa roots under Al stress for 4, 8, or 24 h were analyzed using Illumina high-throughput sequencing platforms. A total of 2464 differentially expressed genes (DEGs) were identified, and most were up-regulated at early (4 h) and/or late (24 h) Al exposure time points rather than at the middle exposure time point (8 h). Metabolic pathway enrichment analysis demonstrated that the DEGs involved in ribosome, protein biosynthesis, and process, the citrate cycle, membrane transport, and hormonal regulation were preferentially enriched and regulated. Biosynthesis inhibition and signal transduction downstream of auxin- and ethylene-mediated signals occur during alfalfa responses to root growth inhibition. The internal Al detoxification mechanisms play important roles in alfalfa roots under Al stress. These findings provide valuable information for identifying and characterizing important components in the Al signaling network in alfalfa and enhance understanding of the molecular mechanisms underlying alfalfa responses to Al stress.
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Affiliation(s)
- Wenxian Liu
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou UniversityLanzhou, China
| | - Conghui Xiong
- Key Laboratory of Mineral Resources in Western China (Gansu Province), School of Earth Sciences, Lanzhou UniversityLanzhou, China
| | - Longfeng Yan
- Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, School of Life Sciences, Lanzhou UniversityLanzhou, China
| | - Zhengshe Zhang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou UniversityLanzhou, China
| | - Lichao Ma
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou UniversityLanzhou, China
| | - Yanrong Wang
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou UniversityLanzhou, China
| | - Yajie Liu
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou UniversityLanzhou, China
| | - Zhipeng Liu
- State Key Laboratory of Grassland Agro-ecosystems, College of Pastoral Agriculture Science and Technology, Lanzhou UniversityLanzhou, China
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26
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Fan W, Xu JM, Lou HQ, Xiao C, Chen WW, Yang JL. Physiological and Molecular Analysis of Aluminium-Induced Organic Acid Anion Secretion from Grain Amaranth (Amaranthus hypochondriacus L.) Roots. Int J Mol Sci 2016; 17:ijms17050608. [PMID: 27144562 PMCID: PMC4881440 DOI: 10.3390/ijms17050608] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/23/2016] [Revised: 04/05/2016] [Accepted: 04/08/2016] [Indexed: 11/30/2022] Open
Abstract
Grain amaranth (Amaranthus hypochondriacus L.) is abundant in oxalate and can secrete oxalate under aluminium (Al) stress. However, the features of Al-induced secretion of organic acid anions (OA) and potential genes responsible for OA secretion are poorly understood. Here, Al-induced OA secretion in grain amaranth roots was characterized by ion charomatography and enzymology methods, and suppression subtractive hybridization (SSH) together with quantitative real-time PCR (qRT-PCR) was used to identify up-regulated genes that are potentially involved in OA secretion. The results showed that grain amaranth roots secrete both oxalate and citrate in response to Al stress. The secretion pattern, however, differs between oxalate and citrate. Neither lanthanum chloride (La) nor cadmium chloride (Cd) induced OA secretion. A total of 84 genes were identified as up-regulated by Al, in which six genes were considered as being potentially involved in OA secretion. The expression pattern of a gene belonging to multidrug and toxic compound extrusion (MATE) family, AhMATE1, was in close agreement with that of citrate secretion. The expression of a gene encoding tonoplast dicarboxylate transporter and four genes encoding ATP-binding cassette transporters was differentially regulated by Al stress, but the expression pattern was not correlated well with that of oxalate secretion. Our results not only reveal the secretion pattern of oxalate and citrate from grain amaranth roots under Al stress, but also provide some genetic information that will be useful for further characterization of genes involved in Al toxicity and tolerance mechanisms.
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Affiliation(s)
- Wei Fan
- College of Resources and Environment, Yunnan Agricultural University, Kunming 650201, China.
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Jia-Meng Xu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
| | - He-Qiang Lou
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
| | - Chuan Xiao
- Institute of Resource Biology and Biotechnology, Department of Biotechnology, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan 430074, China.
| | - Wei-Wei Chen
- College of Life and Environmental Sciences, Hangzhou Normal University, Hangzhou 310036, China.
| | - Jian-Li Yang
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou 310058, China.
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27
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Wang LQ, Yang LT, Guo P, Zhou XX, Ye X, Chen EJ, Chen LS. Leaf cDNA-AFLP analysis reveals novel mechanisms for boron-induced alleviation of aluminum-toxicity in Citrus grandis seedlings. ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY 2015; 120:349-59. [PMID: 26099466 DOI: 10.1016/j.ecoenv.2015.06.009] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Revised: 05/24/2015] [Accepted: 06/05/2015] [Indexed: 05/18/2023]
Abstract
Little information is available on the molecular mechanisms of boron (B)-induced alleviation of aluminum (Al)-toxicity. 'Sour pummelo' (Citrus grandis) seedlings were irrigated for 18 weeks with nutrient solution containing different concentrations of B (2.5 or 20μM H3BO3) and Al (0 or 1.2mM AlCl3·6H2O). B alleviated Al-induced inhibition in plant growth accompanied by lower leaf Al. We used cDNA-AFLP to isolate 127 differentially expressed genes from leaves subjected to B and Al interactions. These genes were related to signal transduction, transport, cell wall modification, carbohydrate and energy metabolism, nucleic acid metabolism, amino acid and protein metabolism, lipid metabolism and stress responses. The ameliorative mechanisms of B on Al-toxicity might be related to: (a) triggering multiple signal transduction pathways; (b) improving the expression levels of genes related to transport; (c) activating genes involved in energy production; and (d) increasing amino acid accumulation and protein degradation. Also, genes involved in nucleic acid metabolism, cell wall modification and stress responses might play a role in B-induced alleviation of Al-toxicity. To conclude, our findings reveal some novel mechanisms on B-induced alleviation of Al-toxicity at the transcriptional level in C. grandis leaves.
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Affiliation(s)
- Liu-Qing Wang
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Lin-Tong Yang
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Peng Guo
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xin-Xing Zhou
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Xin Ye
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - En-Jun Chen
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Li-Song Chen
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China.
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28
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Bian M, Jin X, Broughton S, Zhang XQ, Zhou G, Zhou M, Zhang G, Sun D, Li C. A new allele of acid soil tolerance gene from a malting barley variety. BMC Genet 2015. [PMID: 26219378 PMCID: PMC4518660 DOI: 10.1186/s12863-015-0254-4] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023] Open
Abstract
Background Acid soil is a serious limitation to crop production all over the world. Toxic aluminium (Al) cations in acid soil inhibit root growth and reduce yield. Although a gene tolerant to acid soil has been identified, it has not been used in malting barley breeding, which is partly due to the acid soil tolerance gene being linked to unfavorable malting quality traits. Results A Brazilian malting barley variety Br2 was identified as tolerant to acid soil. A doubled haploid (DH) population was developed from a cross between Br2 and the Australian acid-sensitive cultivar Hamelin. The DH population was tested for acid soil tolerance in native acid soil and a hydroponic system with pH 4.2, pH 4.2 + Al or pH 6.5, and genotyped using SSR, DArT and gene-specific markers. A single QTL was detected for all parameters related to acid soil tolerance. The QTL was mapped to the known HvMATE location on chromosome 4H. Sequence alignment of the HvMATE gene identified 13 INDELs and 87 SNPs, where one SNP coded for a single amino acid difference between the two varieties. A gene-specific marker was developed to detect the single nucleotide polymorphism between Hamelin and Br2. This marker co-segregated with aluminium tolerance and accounted for 79 % of phenotypic variation for acid soil tolerance. Conclusion The present study identified a novel source of acid soil/Al tolerance from a Brazilian malting barley cultivar Br2. This variety tolerated Al toxicity but was sensitive to low pH which is similar to most other Al-tolerant varieties. A gene-specific marker Cit7 was developed based on the HvMATE gene sequence. Cit7 will improve the efficiency of molecular-assisted selection of new barley varieties with tolerance to acid soil. Multiple alleles exist for the acid soil tolerance gene on chromosome 4H, so a malting barley variety that tolerates acid soil could be developed by selecting suitable tolerant alleles. Tolerance to low pH may play an important role for barley to adapt to acid soils. Electronic supplementary material The online version of this article (doi:10.1186/s12863-015-0254-4) contains supplementary material, which is available to authorized users.
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Affiliation(s)
- Miao Bian
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China. .,Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA, 6150, Australia.
| | - Xiaoli Jin
- Agronomy Department, Zhejiang University, Hangzhou, China.
| | - Sue Broughton
- Department of Agriculture & Food WA, 3 Baron-Hay Court, South Perth, WA, 6155, Australia.
| | - Xiao-Qi Zhang
- Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA, 6150, Australia.
| | - Gaofeng Zhou
- Department of Agriculture & Food WA, 3 Baron-Hay Court, South Perth, WA, 6155, Australia.
| | - Meixue Zhou
- Tasmanian Institute of Agriculture, University of Tasmania, P.O. Box 46, Kings Meadows, TAS, 7249, Australia.
| | - Guoping Zhang
- Agronomy Department, Zhejiang University, Hangzhou, China.
| | - Dongfa Sun
- College of Plant Science and Technology, Huazhong Agricultural University, Wuhan, 430070, China.
| | - Chengdao Li
- Department of Agriculture & Food WA, 3 Baron-Hay Court, South Perth, WA, 6155, Australia. .,Western Australian State Agricultural Biotechnology Centre, Murdoch University, Murdoch, WA, 6150, Australia.
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29
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Sujkowska-Rybkowska M, Borucki W. Pectins esterification in the apoplast of aluminum-treated pea root nodules. JOURNAL OF PLANT PHYSIOLOGY 2015; 184:1-7. [PMID: 26151130 DOI: 10.1016/j.jplph.2015.05.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/12/2015] [Revised: 05/11/2015] [Accepted: 05/11/2015] [Indexed: 06/04/2023]
Abstract
Aiming to elucidate the possible involvement of pectins in aluminum-mediated growth inhibition the distribution of pectins in the apoplast of root nodules was investigated. Experiments were performed on the pea (Pisum sativum L.) root nodules treated with aluminum (50 μM AlCl3, for 2 or 24h). For histochemical acidic pectin localization we used ruthenium red staining. Immunolabeling techniques with monoclonal antibodies specific to high methyl-esterified pectin (JIM7), low methyl-esterified pectin (JIM5) and calcium cross-linked pectin (2F4) were used to re-examine the pattern of pectin esterification and distribution. After immunolabeling the samples were observed using a fluorescent and transmission electron microscope. Ruthenium red staining showed that acid pectin content increased in the apoplast of Al-treated nodules and immunolocalization of pectin epitopes revealed that the fraction of de-esterified pectins increased significantly under Al stress. JIM5 and 2F4 epitopes were located on the inner surface of the primary cell wall with higher intensity at cell corners lining the intercellular spaces and at infection threads (ITs) walls. By contrast, JIM 7 labels all walls uniformly throughout the nodule. In the presence of Al, the increase of JIM5 and 2F4 labeling in thick plant and IT walls, together with a decrease of JIM7 labeling was observed. These results indicate a specific role for pectin de-esterification in the process of wall thickening and growth inhibition. In particular, Al-dependent increase in pectin content and their low methyl esterification degree correlate with wall thickness and higher rigidity, and in this way, may affect IT and nodules growth.
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Affiliation(s)
| | - Wojciech Borucki
- Department of Botany, Warsaw University of Life Sciences, Poland
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Gould B, McCouch S, Geber M. De Novo Transcriptome Assembly and Identification of Gene Candidates for Rapid Evolution of Soil Al Tolerance in Anthoxanthum odoratum at the Long-Term Park Grass Experiment. PLoS One 2015; 10:e0124424. [PMID: 26148203 PMCID: PMC4493143 DOI: 10.1371/journal.pone.0124424] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2014] [Accepted: 03/13/2015] [Indexed: 11/18/2022] Open
Abstract
Studies of adaptation in the wild grass Anthoxanthum odoratum at the Park Grass Experiment (PGE) provided one of the earliest examples of rapid evolution in plants. Anthoxanthum has become locally adapted to differences in soil Al toxicity, which have developed there due to soil acidification from long-term experimental fertilizer treatments. In this study, we used transcriptome sequencing to identify Al stress responsive genes in Anthoxanhum and identify candidates among them for further molecular study of rapid Al tolerance evolution at the PGE. We examined the Al content of Anthoxanthum tissues and conducted RNA-sequencing of root tips, the primary site of Al induced damage. We found that despite its high tolerance Anthoxanthum is not an Al accumulating species. Genes similar to those involved in organic acid exudation (TaALMT1, ZmMATE), cell wall modification (OsSTAR1), and internal Al detoxification (OsNRAT1) in cultivated grasses were responsive to Al exposure. Expression of a large suite of novel loci was also triggered by early exposure to Al stress in roots. Three-hundred forty five transcripts were significantly more up- or down-regulated in tolerant vs. sensitive Anthoxanthum genotypes, providing important targets for future study of rapid evolution at the PGE.
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Affiliation(s)
- Billie Gould
- Department of Plant Biology, Plant Biology Laboratories, Michigan State University, East Lansing, MI 48824, United States of America
| | - Susan McCouch
- Department of Ecology and Evolutionary Biology, Cornell University, Corson Hall Tower Rd, Ithaca, NY 14853, United States of America
| | - Monica Geber
- Department of Plant Breeding and Genetics, Cornell University, Emerson Hall Tower Rd, Ithaca, NY 14853, United States of America
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Zhou XX, Yang LT, Qi YP, Guo P, Chen LS. Mechanisms on boron-induced alleviation of aluminum-toxicity in Citrus grandis seedlings at a transcriptional level revealed by cDNA-AFLP analysis. PLoS One 2015; 10:e0115485. [PMID: 25747450 PMCID: PMC4352013 DOI: 10.1371/journal.pone.0115485] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2014] [Accepted: 11/24/2014] [Indexed: 11/18/2022] Open
Abstract
The physiological and biochemical mechanisms on boron (B)-induced alleviation of aluminum (B)-toxicity in plants have been examined in some details, but our understanding of the molecular mechanisms underlying these processes is very limited. In this study, we first used the cDNA-AFLP to investigate the gene expression patterns in Citrus grandis roots responsive to B and Al interactions, and isolated 100 differentially expressed genes. Results showed that genes related to detoxification of reactive oxygen species (ROS) and aldehydes (i.e., glutathione S-transferase zeta class-like isoform X1, thioredoxin M-type 4, and 2-alkenal reductase (NADP+-dependent)-like), metabolism (i.e., carboxylesterases and lecithin-cholesterol acyltransferase-like 4-like, nicotianamine aminotransferase A-like isoform X3, thiosulfate sulfurtransferase 18-like isoform X1, and FNR, root isozyme 2), cell transport (i.e., non-specific lipid-transfer protein-like protein At2g13820-like and major facilitator superfamily protein), Ca signal and hormone (i.e., calcium-binding protein CML19-like and IAA-amino acid hydrolase ILR1-like 4-like), gene regulation (i.e., Gag-pol polyprotein) and cell wall modification (i.e., glycosyl hydrolase family 10 protein) might play a role in B-induced alleviation of Al-toxicity. Our results are useful not only for our understanding of molecular processes associated with B-induced alleviation of Al-toxicity, but also for obtaining key molecular genes to enhance Al-tolerance of plants in the future.
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Affiliation(s)
- Xin-Xing Zhou
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Lin-Tong Yang
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Yi-Ping Qi
- Institute of Materia Medica, Fujian Academy of Medical Sciences, Fuzhou 350001, China
| | - Peng Guo
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Li-Song Chen
- College of Resource and Environmental Science, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Institute of Horticultural Plant Physiology, Biochemistry and Molecular Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- The Higher Educational Key Laboratory of Fujian Province for Soil Ecosystem Health and Regulation, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- Fujian Key Laboratory for Plant Molecular and Cell Biology, Fujian Agriculture and Forestry University, Fuzhou 350002, China
- * E-mail:
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Zhu H, Wang H, Zhu Y, Zou J, Zhao FJ, Huang CF. Genome-wide transcriptomic and phylogenetic analyses reveal distinct aluminum-tolerance mechanisms in the aluminum-accumulating species buckwheat (Fagopyrum tataricum). BMC PLANT BIOLOGY 2015; 15:16. [PMID: 25603892 PMCID: PMC4307214 DOI: 10.1186/s12870-014-0395-z] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/23/2014] [Accepted: 12/22/2014] [Indexed: 05/06/2023]
Abstract
BACKGROUND Similar to common buckwheat (Fagopyrum esculentum), tartary buckwheat (Fagopyrum tataricum) shows a high level of aluminum (Al) tolerance and accumulation. However, the molecular mechanisms for Al detoxification and accumulation are still poorly understood. To begin to elucidate the molecular basis of Al tolerance and accumulation, we used the Illumina high-throughput mRNA sequencing (RNA-seq) technology to conduct a genome-wide transcriptome analysis on both tip and basal segments of the roots exposed to Al. RESULTS By using the Trinity method for the de novo assembly and cap3 software to reduce the redundancy and chimeras of the transcripts, we constructed 39,815 transcripts with an average length of 1184 bp, among which 20,605 transcripts were annotated by BLAST searches in the NCBI non-redundant protein database. Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG) enrichment analysis showed that expression of genes involved in the defense of cell wall toxicity and oxidative stress was preferentially induced by Al stress. Our RNA-seq data also revealed that organic acid metabolism was unlikely to be a rate-limiting step for the Al-induced secretion of organic acids in buckwheat. We identified two citrate transporter genes that were highly induced by Al and potentially involved in the release of citrate into the xylem. In addition, three of four conserved Al-tolerance genes were found to be duplicated in tartary buckwheat and display diverse expression patterns. CONCLUSIONS Nearly 40,000 high quality transcript contigs were de novo assembled for tartary buckwheat, providing a reference platform for future research work in this plant species. Our differential expression and phylogenetic analysis revealed novel aspects of Al-tolerant mechanisms in buckwheat.
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MESH Headings
- Adaptation, Physiological/drug effects
- Adaptation, Physiological/genetics
- Aluminum/toxicity
- Carboxylic Acids/metabolism
- Down-Regulation/drug effects
- Down-Regulation/genetics
- Fagopyrum/drug effects
- Fagopyrum/genetics
- Fagopyrum/physiology
- Gene Expression Profiling
- Gene Expression Regulation, Plant/drug effects
- Gene Ontology
- Genes, Plant
- Genome, Plant
- Molecular Sequence Annotation
- Phylogeny
- Plant Roots/drug effects
- Plant Roots/metabolism
- Plant Shoots/drug effects
- Plant Shoots/metabolism
- RNA, Messenger/genetics
- RNA, Messenger/metabolism
- Reproducibility of Results
- Sequence Analysis, RNA
- Sequence Homology, Nucleic Acid
- Species Specificity
- Stress, Physiological/drug effects
- Stress, Physiological/genetics
- Up-Regulation/drug effects
- Up-Regulation/genetics
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Affiliation(s)
- Haifeng Zhu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Hua Wang
- State Key Laboratory Breeding Base for Zhejiang Sustainable Pest and Disease Control, Institute of Crop and Nuclear Technology Utilization, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
| | - Yifang Zhu
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Jianwen Zou
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Fang-Jie Zhao
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China.
| | - Chao-Feng Huang
- State Key Laboratory of Crop Genetics and Germplasm Enhancement, College of Resources and Environmental Science, Nanjing Agricultural University, Nanjing, 210095, China.
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Aluminum-Induced Inhibition of Root Growth: Roles of Cell Wall Assembly, Structure, and Function. ALUMINUM STRESS ADAPTATION IN PLANTS 2015. [DOI: 10.1007/978-3-319-19968-9_13] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
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El-Moneim DA, Contreras R, Silva-Navas J, Gallego FJ, Figueiras AM, Benito C. Pectin methylesterase gene and aluminum tolerance in Secale cereale. ENVIRONMENTAL AND EXPERIMENTAL BOTANY 2014; 107:125-133. [DOI: 10.1016/j.envexpbot.2014.06.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/02/2023]
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Wulff-Zottele C, Hesse H, Fisahn J, Bromke M, Vera-Villalobos H, Li Y, Frenzel F, Giavalisco P, Ribera-Fonseca A, Zunino L, Caruso I, Stohmann E, Mora MDLL. Sulphate fertilization ameliorates long-term aluminum toxicity symptoms in perennial ryegrass (Lolium perenne). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2014; 83:88-99. [PMID: 25123423 DOI: 10.1016/j.plaphy.2014.07.017] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2014] [Accepted: 07/21/2014] [Indexed: 06/03/2023]
Abstract
Effects of the oxanion sulphate on plant aluminum (Al(3+)) detoxification mechanisms are not well understood. Therefore, holistic physiological and biochemical modifications induced by progressively increased doses of sulphate fertilization in the presence of long-term Al(3+) stress were investigated in the aluminum sensitive perennial ryegrass (Lolium perenne L. cvJumbo). Plant growth inhibition induced by Al(3+) was decreased in response to increasing doses of sulphate supply. Aluminum concentrations measured in roots of perennial ryegrass by atomic absorption spectrometry declined significantly with increasing sulphate concentrations. In parallel, we determined a rise of sulphur in shoots and roots of perennial ryegrass. Inclusion of up to 360 μM of sulphate enhanced cysteine and glutathione biosynthesis in Al(3+) (1.07 μM) treated plants. This increase of thiol-containing compounds favored all modifications in the glutathione redox balance, declining lipid peroxidation, decreasing the activity of superoxide dismutase, and modifying the expression of proteins involved in the diminution of Al(3+) toxicity in roots. In particular, proteome analysis by 1D-SDS-PAGE and LC-MS/MS allowed to identify up (e.g. vacuolar proton ATPase, proteosome β subunit, etc) and down (Glyoxilase I, Ascorbate peroxidase, etc.) regulated proteins induced by Al(3+) toxicity symptoms in roots. Although, sulphate supply up to 480 μM caused a reduction in Al(3+) toxicity symptoms, it was not as efficient as compared to 360 μM sulphate fertilization. These results suggest that sulphate fertilization ameliorates Al(3+) toxicity responses in an intracellular specific manner within Lolium perenne.
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Affiliation(s)
- Cristian Wulff-Zottele
- Unidad de Biología Celular y Molecular, Departamento Biomédico, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Av. Angamos 601, Antofagasta, Chile.
| | - Holger Hesse
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam/Golm, Germany
| | - Joachim Fisahn
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam/Golm, Germany
| | - Mariusz Bromke
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam/Golm, Germany
| | - Hernán Vera-Villalobos
- Unidad de Biología Celular y Molecular, Departamento Biomédico, Facultad de Ciencias de la Salud, Universidad de Antofagasta, Av. Angamos 601, Antofagasta, Chile
| | - Yan Li
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam/Golm, Germany
| | - Falko Frenzel
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam/Golm, Germany
| | - Patrick Giavalisco
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam/Golm, Germany
| | - Alejandra Ribera-Fonseca
- Center of Plant-Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile
| | - Ligia Zunino
- Doctoral Program in Science of Natural Resources, Universidad de La Frontera, Temuco, Chile
| | - Immcolata Caruso
- Department of Soil, Plant, Environmental and Animal Productions Sciences, Section of Agricultural-Chemistry Sciences, University of Naples Federico II, Via Università 100, 80055 Portici, Naples, Italy
| | - Evelyn Stohmann
- Center of Plant-Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile
| | - Maria de la Luz Mora
- Center of Plant-Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera, Temuco, Chile
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36
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Transcriptome analysis highlights changes in the leaves of maize plants cultivated in acidic soil containing toxic levels of Al3+. Mol Biol Rep 2014; 41:8107-16. [DOI: 10.1007/s11033-014-3709-1] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2014] [Accepted: 08/26/2014] [Indexed: 10/24/2022]
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37
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Fan W, Lou HQ, Gong YL, Liu MY, Wang ZQ, Yang JL, Zheng SJ. Identification of early Al-responsive genes in rice bean (Vigna umbellata) roots provides new clues to molecular mechanisms of Al toxicity and tolerance. PLANT, CELL & ENVIRONMENT 2014; 37:1586-97. [PMID: 24372448 DOI: 10.1111/pce.12258] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2013] [Revised: 12/08/2013] [Accepted: 12/10/2013] [Indexed: 05/06/2023]
Abstract
Significant secretion of citrate from root apex of rice bean (Vigna umbellata) is delayed by several hours under aluminium (Al) stress. However, the molecular basis of regulation of VuMATE1, a gene encoding an Al-activated citrate transporter, remains unclear. In this study, we used suppression subtractive hybridization together with reverse northern blot analysis and qRT-PCR to identify genes with altered transcript levels in the root apex after treatment with low (5 μm) or high (25 μm) concentration of AlCl(3) for a short time (4 h). We found that in addition to VuMATE1, 393 genes showed an early response to Al. Among functionally annotated genes, those related to 'metabolism and energy', 'signal transduction and transcription' and 'transport' was predominantly up-regulated, whereas those associated with 'protein translation, processing and degradation' was predominantly down-regulated. Comparative analysis of transcriptional profiles highlighted candidate genes associated with citrate secretion and revealed several new aspects of the molecular processes underlying Al toxicity and tolerance. Based on the data, it is proposed that metabolic changes represent adaptive mechanisms to Al stress, whereas inhibition of both cell elongation and cell division underlies Al-induced root growth inhibition.
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Affiliation(s)
- W Fan
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China
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Yang ZB, Geng X, He C, Zhang F, Wang R, Horst WJ, Ding Z. TAA1-regulated local auxin biosynthesis in the root-apex transition zone mediates the aluminum-induced inhibition of root growth in Arabidopsis. THE PLANT CELL 2014; 26:2889-904. [PMID: 25052716 PMCID: PMC4145121 DOI: 10.1105/tpc.114.127993] [Citation(s) in RCA: 129] [Impact Index Per Article: 12.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2014] [Revised: 06/18/2014] [Accepted: 06/28/2014] [Indexed: 05/02/2023]
Abstract
The transition zone (TZ) of the root apex is the perception site of Al toxicity. Here, we show that exposure of Arabidopsis thaliana roots to Al induces a localized enhancement of auxin signaling in the root-apex TZ that is dependent on TAA1, which encodes a Trp aminotransferase and regulates auxin biosynthesis. TAA1 is specifically upregulated in the root-apex TZ in response to Al treatment, thus mediating local auxin biosynthesis and inhibition of root growth. The TAA1-regulated local auxin biosynthesis in the root-apex TZ in response to Al stress is dependent on ethylene, as revealed by manipulating ethylene homeostasis via the precursor of ethylene biosynthesis 1-aminocyclopropane-1-carboxylic acid, the inhibitor of ethylene biosynthesis aminoethoxyvinylglycine, or mutant analysis. In response to Al stress, ethylene signaling locally upregulates TAA1 expression and thus auxin responses in the TZ and results in auxin-regulated root growth inhibition through a number of auxin response factors (ARFs). In particular, ARF10 and ARF16 are important in the regulation of cell wall modification-related genes. Our study suggests a mechanism underlying how environmental cues affect root growth plasticity through influencing local auxin biosynthesis and signaling.
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Affiliation(s)
- Zhong-Bao Yang
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Xiaoyu Geng
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Chunmei He
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Feng Zhang
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Rong Wang
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Walter J Horst
- Institute of Plant Nutrition, Leibniz Universität Hannover, 30419 Hannover, Germany
| | - Zhaojun Ding
- Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, College of Life Science, Shandong University, Jinan 250100, People's Republic of China
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Nunes-Nesi A, Santos Brito D, Inostroza-Blancheteau C, Fernie AR, Araújo WL. The complex role of mitochondrial metabolism in plant aluminum resistance. TRENDS IN PLANT SCIENCE 2014; 19:399-407. [PMID: 24462392 DOI: 10.1016/j.tplants.2013.12.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2013] [Revised: 12/16/2013] [Accepted: 12/19/2013] [Indexed: 05/18/2023]
Abstract
The majority of soils in tropical and subtropical regions are acidic, rendering the soil a major limitation to plant growth and food production in many developing countries. High concentrations of soluble aluminum cations, particularly Al3+, are largely responsible for reducing root elongation and disrupting nutrient and water uptake. Two mechanisms, namely, the exclusion mechanism and tolerance mechanism, have been proposed to govern Al3+ resistance in plants. Both mechanisms are related to mitochondrial activity as well as to mitochondrial metabolism and organic acid transport. Here, we review the considerable progress that has been made towards developing an understanding of the physiological role of mitochondria in the aluminum response and discuss the potential for using this knowledge in next-generation engineering.
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Affiliation(s)
- Adriano Nunes-Nesi
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil.
| | - Danielle Santos Brito
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil
| | - Claudio Inostroza-Blancheteau
- Núcleo de Investigación en Producción Alimentaría, Facultad de Recursos Naturales, Escuela de Agronomía, Universidad Católica de Temuco, P.O. Box 56-D, Temuco, Chile
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Wagner L Araújo
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil.
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40
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Arenhart RA, Bai Y, Valter de Oliveira LF, Bucker Neto L, Schunemann M, Maraschin FDS, Mariath J, Silverio A, Sachetto-Martins G, Margis R, Wang ZY, Margis-Pinheiro M. New insights into aluminum tolerance in rice: the ASR5 protein binds the STAR1 promoter and other aluminum-responsive genes. MOLECULAR PLANT 2014; 7:709-21. [PMID: 24253199 PMCID: PMC3973494 DOI: 10.1093/mp/sst160] [Citation(s) in RCA: 81] [Impact Index Per Article: 8.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/17/2013] [Accepted: 11/05/2013] [Indexed: 05/18/2023]
Abstract
Aluminum (Al) toxicity in plants is one of the primary constraints in crop production. Al³⁺, the most toxic form of Al, is released into soil under acidic conditions and causes extensive damage to plants, especially in the roots. In rice, Al tolerance requires the ASR5 gene, but the molecular function of ASR5 has remained unknown. Here, we perform genome-wide analyses to identify ASR5-dependent Al-responsive genes in rice. Based on ASR5_RNAi silencing in plants, a global transcriptome analysis identified a total of 961 genes that were responsive to Al treatment in wild-type rice roots. Of these genes, 909 did not respond to Al in the ASR5_RNAi plants, indicating a central role for ASR5 in Al-responsive gene expression. Under normal conditions, without Al treatment, the ASR5_RNAi plants expressed 1.756 genes differentially compared to the wild-type plants, and 446 of these genes responded to Al treatment in the wild-type plants. Chromatin immunoprecipitation followed by deep sequencing identified 104 putative target genes that were directly regulated by ASR5 binding to their promoters, including the STAR1 gene, which encodes an ABC transporter required for Al tolerance. Motif analysis of the binding peak sequences revealed the binding motif for ASR5, which was confirmed via in vitro DNA-binding assays using the STAR1 promoter. These results demonstrate that ASR5 acts as a key transcription factor that is essential for Al-responsive gene expression and Al tolerance in rice.
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Affiliation(s)
- Rafael Augusto Arenhart
- Programa de Pós-Graduação em Genética e Biologia Molecular Avenida Bento Gonçalves 9500, Departamento de Genética, sala 207, prédio 43312, Universidade Federal do Rio Grande do Sul, 91501–970, Porto Alegre, Brasil
| | - Yang Bai
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
- School of Computer Science and Technology, Harbin Institute of Technology, Harbin 150001, China
| | - Luiz Felipe Valter de Oliveira
- Programa de Pós-Graduação em Genética e Biologia Molecular Avenida Bento Gonçalves 9500, Departamento de Genética, sala 207, prédio 43312, Universidade Federal do Rio Grande do Sul, 91501–970, Porto Alegre, Brasil
| | - Lauro Bucker Neto
- Programa de Pós-Graduação em Genética e Biologia Molecular Avenida Bento Gonçalves 9500, Departamento de Genética, sala 207, prédio 43312, Universidade Federal do Rio Grande do Sul, 91501–970, Porto Alegre, Brasil
| | - Mariana Schunemann
- Programa de Pós-Graduação em Genética e Biologia Molecular Avenida Bento Gonçalves 9500, Departamento de Genética, sala 207, prédio 43312, Universidade Federal do Rio Grande do Sul, 91501–970, Porto Alegre, Brasil
| | | | - Jorge Mariath
- Departamento de Botânica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil
| | - Adriano Silverio
- Departamento de Botânica, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil
| | | | - Rogerio Margis
- Programa de Pós-Graduação em Genética e Biologia Molecular Avenida Bento Gonçalves 9500, Departamento de Genética, sala 207, prédio 43312, Universidade Federal do Rio Grande do Sul, 91501–970, Porto Alegre, Brasil
- Centro de Biotecnologia, Universidade Federal do Rio Grande do Sul, Porto Alegre, Brasil
| | - Zhi-Yong Wang
- Department of Plant Biology, Carnegie Institution for Science, Stanford, CA 94305, USA
| | - Marcia Margis-Pinheiro
- Programa de Pós-Graduação em Genética e Biologia Molecular Avenida Bento Gonçalves 9500, Departamento de Genética, sala 207, prédio 43312, Universidade Federal do Rio Grande do Sul, 91501–970, Porto Alegre, Brasil
- To whom correspondence should be addressed. E-mail , fax 55-51-3308-7311, tel. 55 (51) 3308–9814
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Sun C, Lu L, Liu L, Liu W, Yu Y, Liu X, Hu Y, Jin C, Lin X. Nitrate reductase-mediated early nitric oxide burst alleviates oxidative damage induced by aluminum through enhancement of antioxidant defenses in roots of wheat (Triticum aestivum). THE NEW PHYTOLOGIST 2014; 201:1240-1250. [PMID: 24237306 DOI: 10.1111/nph.12597] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/06/2013] [Accepted: 10/09/2013] [Indexed: 05/03/2023]
Abstract
• Nitric oxide (NO) is an important signaling molecule involved in the physiological processes of plants. The role of NO release in the tolerance strategies of roots of wheat (Triticum aestivum) under aluminum (Al) stress was investigated using two genotypes with different Al resistances. • An early NO burst at 3 h was observed in the root tips of the Al-tolerant genotype Jian-864, whereas the Al-sensitive genotype Yang-5 showed no NO accumulation at 3 h but an extremely high NO concentration after 12 h. Stimulating NO production at 3 h in the root tips of Yang-5 with the NO donor relieved Al-induced root inhibition and callose production, as well as oxidative damage and ROS accumulation, while elimination of the early NO burst by NO scavenger aggravated root inhibition in Jian-864. • Synthesis of early NO in roots of Jian-864 was mediated through nitrate reductase (NR) but not through NO synthase. Elevated antioxidant enzyme activities were induced by Al stress in both wheat genotypes and significantly enhanced by NO donor, but suppressed by NO scavenger or NR inhibitor. • These results suggest that an NR-mediated early NO burst plays an important role in Al resistance of wheat through modulating enhanced antioxidant defense to adapt to Al stress.
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Affiliation(s)
- Chengliang Sun
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Lingli Lu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
- Key Laboratory of Subtropical Soil Science and Plant Nutrition of Zhejiang Province, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Lijuan Liu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Wenjing Liu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Yan Yu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Xiaoxia Liu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Yan Hu
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Chongwei Jin
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
- Key Laboratory of Subtropical Soil Science and Plant Nutrition of Zhejiang Province, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China
| | - Xianyong Lin
- MOE Key Laboratory of Environment Remediation and Ecological Health, College of Natural Resource & Environmental Sciences, Zhejiang University, Hangzhou, 310058, China
- Key Laboratory of Subtropical Soil Science and Plant Nutrition of Zhejiang Province, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou, 310058, China
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Guimaraes CT, Simoes CC, Pastina MM, Maron LG, Magalhaes JV, Vasconcellos RCC, Guimaraes LJM, Lana UGP, Tinoco CFS, Noda RW, Jardim-Belicuas SN, Kochian LV, Alves VMC, Parentoni SN. Genetic dissection of Al tolerance QTLs in the maize genome by high density SNP scan. BMC Genomics 2014; 15:153. [PMID: 24564817 PMCID: PMC4007696 DOI: 10.1186/1471-2164-15-153] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2013] [Accepted: 01/29/2014] [Indexed: 11/17/2022] Open
Abstract
BACKGROUND Aluminum (Al) toxicity is an important limitation to food security in tropical and subtropical regions. High Al saturation on acid soils limits root development, reducing water and nutrient uptake. In addition to naturally occurring acid soils, agricultural practices may decrease soil pH, leading to yield losses due to Al toxicity. Elucidating the genetic and molecular mechanisms underlying maize Al tolerance is expected to accelerate the development of Al-tolerant cultivars. RESULTS Five genomic regions were significantly associated with Al tolerance, using 54,455 SNP markers in a recombinant inbred line population derived from Cateto Al237. Candidate genes co-localized with Al tolerance QTLs were further investigated. Near-isogenic lines (NILs) developed for ZmMATE2 were as Al-sensitive as the recurrent line, indicating that this candidate gene was not responsible for the Al tolerance QTL on chromosome 5, qALT5. However, ZmNrat1, a maize homolog to OsNrat1, which encodes an Al(3+) specific transporter previously implicated in rice Al tolerance, was mapped at ~40 Mbp from qALT5. We demonstrate for the first time that ZmNrat1 is preferentially expressed in maize root tips and is up-regulated by Al, similarly to OsNrat1 in rice, suggesting a role of this gene in maize Al tolerance. The strongest-effect QTL was mapped on chromosome 6 (qALT6), within a 0.5 Mbp region where three copies of the Al tolerance gene, ZmMATE1, were found in tandem configuration. qALT6 was shown to increase Al tolerance in maize; the qALT6-NILs carrying three copies of ZmMATE1 exhibited a two-fold increase in Al tolerance, and higher expression of ZmMATE1 compared to the Al sensitive recurrent parent. Interestingly, a new source of Al tolerance via ZmMATE1 was identified in a Brazilian elite line that showed high expression of ZmMATE1 but carries a single copy of ZmMATE1. CONCLUSIONS High ZmMATE1 expression, controlled either by three copies of the target gene or by an unknown molecular mechanism, is responsible for Al tolerance mediated by qALT6. As Al tolerant alleles at qALT6 are rare in maize, marker-assisted introgression of this QTL is an important strategy to improve maize adaptation to acid soils worldwide.
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Affiliation(s)
- Claudia T Guimaraes
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Christiano C Simoes
- />Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG Brazil
| | - Maria Marta Pastina
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Lyza G Maron
- />Department of Plant Breeding and Genetics, Cornell University, Ithaca, NY USA
| | - Jurandir V Magalhaes
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Renato CC Vasconcellos
- />Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG Brazil
| | - Lauro JM Guimaraes
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Ubiraci GP Lana
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Carlos FS Tinoco
- />Departamento de Biologia, Centro Universitário de Sete Lagoas, Sete Lagoas, MG Brazil
| | - Roberto W Noda
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Silvia N Jardim-Belicuas
- />Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, Belo Horizonte, MG Brazil
| | - Leon V Kochian
- />Robert W. Holley Center for Agriculture and Health, U.S. Department of Agriculture – Agriculture Research Service, Cornell University, Ithaca, NY USA
| | - Vera MC Alves
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
| | - Sidney N Parentoni
- />Nucleus of Applied Biology, Embrapa Maize and Sorghum, Road MG424, km 65, Sete Lagoas, MG 35701-970 Brazil
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Ding H, Wen D, Fu Z, Qian H. The secretion of organic acids is also regulated by factors other than aluminum. ENVIRONMENTAL MONITORING AND ASSESSMENT 2014; 186:1123-1131. [PMID: 24097010 DOI: 10.1007/s10661-013-3443-5] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2013] [Accepted: 09/14/2013] [Indexed: 06/02/2023]
Abstract
As a result of natural processes and human activities, aluminum (Al) toxicity is recognized as a major limiting factor for plant productivity, and the secretion of organic acids facilitated by channel proteins is one of the most important Al resistance mechanisms in plants. The objective of this study was to evaluate the effects of several types of stress, including herbicide (imazethapyr (IM) and diclofop-methyl (DM)), heavy metal (Al and Cu), salt stress (NaCl), and proton stress (HCl), on the release of organic acids in rice. The results showed that 0.05 mg/L IM, 0.1 mg/L DM, 4680 mg/L NaCl, 0.5 mg/L CuSO4, and 18 mg/L AlCl3 significantly inhibited rice root elongation and the root fresh weight. In contrast, no significant inhibitory effects on rice growth were found with HCl (pH = 4.5). Similar to the effect of AlCl3 on organic acid induction, treatment with IM, DM, NaCl, and CuSO4 also induced the synthesis of endogenous citric acid and oxalic acid but decreased endogenous malic acid synthesis in the seedlings, though only citric acid was released into the environment after these treatments. We also analyzed the transcripts of three citrate channel proteins and found they were up-regulated by NaCl, CuSO4, and AlCl3 but not by IM or DM. This study clarified that organic acid secretion in plants might be a common phenomenon when plants are exposed to environmental stress other than Al toxicity.
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Affiliation(s)
- Haiyan Ding
- College of Biological and Environmental Engineering, Zhejiang University of Technology, Hangzhou, 310032, People's Republic of China
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Ding ZJ, Yan JY, Xu XY, Li GX, Zheng SJ. WRKY46 functions as a transcriptional repressor of ALMT1, regulating aluminum-induced malate secretion in Arabidopsis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2013; 76:825-35. [PMID: 24118304 DOI: 10.1111/tpj.12337] [Citation(s) in RCA: 117] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2013] [Revised: 09/02/2013] [Accepted: 09/17/2013] [Indexed: 05/18/2023]
Abstract
Aluminum (Al) toxicity is the major limiting factor for crop production on acid soils, but the transcriptional regulation of Al tolerance genes is largely unknown. Here, we found that the expression of a WRKY domain-containing transcription factor WRKY46 is inhibited by Al and expressed in root stele, whereas the expression of ALMT1, which encodes a malate efflux transporter, is induced by Al stress and spatially co-localized with WRKY46 in root stele, indicating the possible interaction between WRKY46 and ALMT1 in Arabidopsis. Mutation of WRKY46 by T-DNA insertion leads to better root growth under Al stress, and lower root Al content compared with the wild-type Col-0. The wrky46 mutant shows increased root malate secretion, which is consistent with the higher ALMT1 expression in the mutant. Transient expression analysis using truncated promoter of ALMT1 showed that ALMT1 expression can be inhibited by WRKY46 in tobacco leaves. The yeast one-hybrid assay and ChIP-qPCR analysis revealed that WRKY46 directly binds to ALMT1 promoter through specific W-boxes. Taken together, we demonstrated that WRKY46 is a negative regulator of ALMT1, mutation of WRKY46 leads to increased malate secretion and reduced Al accumulation in root apices, and thus confers higher Al resistance.
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Affiliation(s)
- Zhong Jie Ding
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Sciences, Zhejiang University, Hangzhou, 310058, China
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Wang C, Wang CY, Zhao XQ, Chen RF, Lan P, Shen RF. Proteomic analysis of a high aluminum tolerant yeast Rhodotorula taiwanensis RS1 in response to aluminum stress. BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS 2013; 1834:1969-75. [DOI: 10.1016/j.bbapap.2013.06.014] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/07/2013] [Revised: 06/17/2013] [Accepted: 06/20/2013] [Indexed: 11/25/2022]
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Cai S, Wu D, Jabeen Z, Huang Y, Huang Y, Zhang G. Genome-wide association analysis of aluminum tolerance in cultivated and Tibetan wild barley. PLoS One 2013; 8:e69776. [PMID: 23922796 PMCID: PMC3724880 DOI: 10.1371/journal.pone.0069776] [Citation(s) in RCA: 41] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2013] [Accepted: 06/05/2013] [Indexed: 11/19/2022] Open
Abstract
Tibetan wild barley (Hordeum vulgare L. ssp. spontaneum), originated and grown in harsh enviroNment in Tibet, is well-known for its rich germpalsm with high tolerance to abiotic stresses. However, the genetic variation and genes involved in Al tolerance are not totally known for the wild barley. In this study, a genome-wide association analysis (GWAS) was performed by using four root parameters related with Al tolerance and 469 DArT markers on 7 chromosomes within or across 110 Tibetan wild accessions and 56 cultivated cultivars. Population structure and cluster analysis revealed that a wide genetic diversity was present in Tibetan wild barley. Linkage disequilibrium (LD) decayed more rapidly in Tibetan wild barley (9.30 cM) than cultivated barley (11.52 cM), indicating that GWAS may provide higher resolution in the Tibetan group. Two novel Tibetan group-specific loci, bpb-9458 and bpb-8524 were identified, which were associated with relative longest root growth (RLRG), located at 2H and 7H on barely genome, and could explain 12.9% and 9.7% of the phenotypic variation, respectively. Moreover, a common locus bpb-6949, localized 0.8 cM away from a candidate gene HvMATE, was detected in both wild and cultivated barleys, and showed significant association with total root growth (TRG). The present study highlights that Tibetan wild barley could provide elite germplasm novel genes for barley Al-tolerant improvement.
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Affiliation(s)
- Shengguan Cai
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Dezhi Wu
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Zahra Jabeen
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Yuqing Huang
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Yechang Huang
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
| | - Guoping Zhang
- Agronomy Department, Key Laboratory of Crop Germplasm Resource of Zhejiang Province, Zhejiang University, Hangzhou, China
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Brunner I, Sperisen C. Aluminum exclusion and aluminum tolerance in woody plants. FRONTIERS IN PLANT SCIENCE 2013; 4:172. [PMID: 23781222 PMCID: PMC3679494 DOI: 10.3389/fpls.2013.00172] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Accepted: 05/14/2013] [Indexed: 05/18/2023]
Abstract
The aluminum (Al) cation Al(3) (+) is highly rhizotoxic and is a major stress factor to plants on acid soils, which cover large areas of tropical and boreal regions. Many woody plant species are native to acid soils and are well adapted to high Al(3) (+) conditions. In tropical regions, both woody Al accumulator and non-Al accumulator plants occur, whereas in boreal regions woody plants are non-Al accumulators. The mechanisms of these adaptations can be divided into those that facilitate the exclusion of Al(3) (+) from root cells (exclusion mechanisms) and those that enable plants to tolerate Al(3) (+) once it has entered the root and shoot symplast (internal tolerance mechanisms). The biochemical and molecular basis of these mechanisms have been intensively studied in several crop plants and the model plant Arabidopsis. In this review, we examine the current understanding of Al(3) (+) exclusion and tolerance mechanisms from woody plants. In addition, we discuss the ecology of woody non-Al accumulator and Al accumulator plants, and present examples of Al(3) (+) adaptations in woody plant populations. This paper complements previous reviews focusing on crop plants and provides insights into evolutionary processes operating in plant communities that are widespread on acid soils.
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Affiliation(s)
- Ivano Brunner
- Forest Soils and Biogeochemistry, Swiss Federal Institute for Forest, Snow and Landscape ResearchBirmensdorf, Switzerland
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Aluminum tolerance in maize is associated with higher MATE1 gene copy number. Proc Natl Acad Sci U S A 2013; 110:5241-6. [PMID: 23479633 DOI: 10.1073/pnas.1220766110] [Citation(s) in RCA: 194] [Impact Index Per Article: 17.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022] Open
Abstract
Genome structure variation, including copy number variation and presence/absence variation, comprises a large extent of maize genetic diversity; however, its effect on phenotypes remains largely unexplored. Here, we describe how copy number variation underlies a rare allele that contributes to maize aluminum (Al) tolerance. Al toxicity is the primary limitation for crop production on acid soils, which make up 50% of the world's potentially arable lands. In a recombinant inbred line mapping population, copy number variation of the Al tolerance gene multidrug and toxic compound extrusion 1 (MATE1) is the basis for the quantitative trait locus of largest effect on phenotypic variation. This expansion in MATE1 copy number is associated with higher MATE1 expression, which in turn results in superior Al tolerance. The three MATE1 copies are identical and are part of a tandem triplication. Only three maize inbred lines carrying the three-copy allele were identified from maize and teosinte diversity panels, indicating that copy number variation for MATE1 is a rare, and quite likely recent, event. These maize lines with higher MATE1 copy number are also Al-tolerant, have high MATE1 expression, and originate from regions of highly acidic soils. Our findings show a role for copy number variation in the adaptation of maize to acidic soils in the tropics and suggest that genome structural changes may be a rapid evolutionary response to new environments.
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Tsutsui T, Yamaji N, Huang CF, Motoyama R, Nagamura Y, Ma JF. Comparative genome-wide transcriptional analysis of Al-responsive genes reveals novel Al tolerance mechanisms in rice. PLoS One 2012; 7:e48197. [PMID: 23110212 PMCID: PMC3482186 DOI: 10.1371/journal.pone.0048197] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2012] [Accepted: 09/20/2012] [Indexed: 11/18/2022] Open
Abstract
Rice (Oryza sativa) is the most aluminum (Al)-tolerant crop among small-grain cereals, but the mechanism underlying its high Al resistance is still not well understood. To understand the mechanisms underlying high Al-tolerance, we performed a comparative genome-wide transcriptional analysis by comparing expression profiling between the Al-tolerance cultivar (Koshihikari) and an Al-sensitive mutant star1 (SENSITIVE TO AL RHIZOTOXICITY 1) in both the root tips and the basal roots. Exposure to 20 µM AlCl(3) for 6 h resulted in up-regulation (higher than 3-fold) of 213 and 2015 genes including 185 common genes in the root tips of wild-type and the mutant, respectively. On the other hand, in the basal root, genes up-regulated by Al were 126 and 2419 including 76 common genes in the wild-type and the mutant, respectively. These results indicate that Al-response genes are not only restricted to the root tips, but also in the basal root region. Analysis with genes up- or down-regulated only in the wild-type reveals that there are other mechanisms for Al-tolerance except for a known transcription factor ART1-regulated one in rice. These mechanisms are related to nitrogen assimilation, secondary metabolite synthesis, cell-wall synthesis and ethylene synthesis. Although the exact roles of these putative tolerance genes remain to be examined, our data provide a platform for further work on Al-tolerance in rice.
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Affiliation(s)
- Tomokazu Tsutsui
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
| | - Naoki Yamaji
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
| | - Chao Feng Huang
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
| | - Ritsuko Motoyama
- Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Yoshiaki Nagamura
- Genome Resource Center, Division of Genome and Biodiversity Research, National Institute of Agrobiological Sciences, Tsukuba, Ibaraki, Japan
| | - Jian Feng Ma
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
- * E-mail:
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