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Jiang H, Zhang Y, Tu W, Sun G, Wu N, Zhang Y. The General Trends of Genetic Diversity Change in Alien Plants' Invasion. PLANTS (BASEL, SWITZERLAND) 2023; 12:2690. [PMID: 37514304 PMCID: PMC10385407 DOI: 10.3390/plants12142690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/22/2023] [Revised: 07/11/2023] [Accepted: 07/17/2023] [Indexed: 07/30/2023]
Abstract
Genetic diversity is associated with invasion dynamics during establishment and expansion stages by affecting the viability and adaptive potential of exotics. There have been many reports on the comparison between the genetic diversity of invasive alien species (IAS) in and out of their native habitats, but the conclusions were usually inconsistent. In this work, a standard meta-analysis of the genetic diversity of 19 invasive plants based on 26 previous studies was carried out to investigate the general trend for the change of IASs' genetic diversity during their invasion process and its real correlation with the invasion fate. Those 26 studies were screened from a total of 3557 peer-reviewed publications from the ISI Web of Science database during the period of January 2000 to May 2022. Based on the selected studies in this work, a general reduction of IASs' genetic diversity was found in non-native populations compared to that in native ones, while the difference was not significant. This finding suggested that regardless of the change in genetic diversity, it had no substantial effect on the outcome of the invasion process. Therefore, genetic diversity might not serve as a reliable indicator for risk assessment and prediction of invasion dynamic prediction in the case of IASs.
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Affiliation(s)
- Han Jiang
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
- University of Chinese Academy of Sciences, Beijing 100049, China
| | - Yi Zhang
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Wenqin Tu
- State Key Laboratory of Earth Surface Processes and Resource Ecology, College of Life Sciences, Beijing Normal University, Beijing 100875, China
| | - Geng Sun
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Ning Wu
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
| | - Yongmei Zhang
- China-Croatia 'Belt and Road' Joint Laboratory on Biodiversity and Ecosystem Services, Chengdu Institute of Biology, Chinese Academy of Sciences, Chengdu 610041, China
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2
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Bernos TA, Avlijaš S, Hill J, Morissette O, Ricciardi A, Mandrak NE, Jeffries KM. Genetic diversity and structure of a recent fish invasion: Tench ( Tinca tinca) in eastern North America. Evol Appl 2023; 16:173-188. [PMID: 36699124 PMCID: PMC9850014 DOI: 10.1111/eva.13520] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2022] [Revised: 10/22/2022] [Accepted: 12/02/2022] [Indexed: 01/20/2023] Open
Abstract
Introduced and geographically expanding populations experience similar eco-evolutionary challenges, including founder events, genetic bottlenecks, and novel environments. Theory predicts that reduced genetic diversity resulting from such phenomena limits the success of introduced populations. Using 1900 SNPs obtained from restriction-site-associated DNA sequencing, we evaluated hypotheses related to the invasion history and connectivity of an invasive population of Tench (Tinca tinca), a Eurasian freshwater fish that has been expanding geographically in eastern North America for three decades. Consistent with the reported history of a single introduction event, our findings suggest that multiple introductions from distinct genetic sources are unlikely as Tench had a small effective population size (~114 [95% CI = 106-123] individuals), no strong population subdivision across time and space, and evidence of a recent genetic bottleneck. The large genetic neighbourhood size (220 km) and weak within-population genetic substructure suggested high connectivity across the invaded range, despite the relatively large area occupied. There was some evidence for a small decay in genetic diversity as the species expanded northward, but not southward, into new habitats. As eradicating the species within a ~112 km radius would be necessary to prevent recolonization, eradicating Tench is likely not feasible at watershed-and possibly local-scales. Management should instead focus on reducing abundance in priority conservation areas to mitigate adverse impacts. Our study indicates that introduced populations can thrive and exhibit relatively high levels of genetic diversity despite severe bottlenecks (<1.5% of the ancestral effective population size) and suggests that landscape heterogeneity and population demographics can generate variability in spatial patterns of genetic diversity within a single range expansion.
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Affiliation(s)
- Thaïs A. Bernos
- Department of Ecology and Evolutionary BiologyUniversity of TorontoTorontoOntarioCanada
- Department of Biological SciencesUniversity of Toronto ScarboroughScarboroughOntarioCanada
| | - Sunčica Avlijaš
- Redpath MuseumMcGill UniversityMontrealQuébecCanada
- Department of BiologyMcGill UniversityMontrealQuébecCanada
| | - Jaclyn Hill
- Maurice Lamontagne InstituteFisheries and Oceans CanadaMont‐JoliQuébecCanada
| | - Olivier Morissette
- Département des Sciences FondamentalesUniversité du Québec à ChicoutimiChicoutimiQuébecCanada
| | | | - Nicholas E. Mandrak
- Department of Ecology and Evolutionary BiologyUniversity of TorontoTorontoOntarioCanada
| | - Kenneth M. Jeffries
- Department of Biological SciencesUniversity of ManitobaWinnipegManitobaCanada
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Zarei F, Esmaeili HR, Sadeghi R, Schliewen UK, Kovačić M, Abbasi K, Gholamhosseini A. An integrative insight into the diversity, distribution, and biogeography of the freshwater endemic clade of the Ponticola syrman group (Teleostei: Gobiidae) in the Caucasus biodiversity hotspot. Ecol Evol 2022; 12:e9300. [PMID: 36177146 PMCID: PMC9478520 DOI: 10.1002/ece3.9300] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2022] [Revised: 08/12/2022] [Accepted: 08/25/2022] [Indexed: 11/06/2022] Open
Abstract
Freshwater habitats of the Caucasus biodiversity hotspot represent a center of endemism for the gobiid genus Ponticola Iljin, 1927. Hitherto, large-scale molecular studies, owing to restricted taxon and geographical sampling, have failed to give an elaborate picture of diversity and evolutionary history of these species. Here, to contribute to filling this gap, we assessed taxonomic diversity, phylogeography and evolutionary history for the south Caspian populations of Ponticola presently classified as P. iranicus and P. patimari, using an integrative taxonomic approach comprising an entire geographic range sampling, and analyses of mitochondrial DNA haplotypes, the head lateral line system, otolith shape, and meristic and morphometric variation. All freshwater samples of the P. syrman group belong to a monophyletic clade with two main subclades: a small subclade confined to the upper Sefidroud sub-basin including the type locality of P. iranicus and a large subclade with three geographically constrained haplogroups (Hg1, Hg2, and Hg3), comprising the rest of the distribution. Hg1 showed an eastern distribution including the type locality of P. patimari, while Hg2 and Hg3 are sister groups with central and western-central distributions, respectively. The freshwater clade diverged from P. syrman during the Tyurkyanian low stand (~150 m b.s.l. lasting ~0.1 Myr), while the divergence of P. iranicus and P. patimari and radiations within P. patimari took place during the Bakunian high stand (up to 50 m a.s.l. lasting ~378-480 kya). Species delimitation analyses indicated two distinct species, corresponding to each main subclade. Although the otolith shape and lateral line analyses did not reflect with phylogeographic pattern, PCA and DFA plots of meristic and morphometric data showed a clear separation of the two major subclades corresponding to P. iranicus and P. patimari, suggesting the presence of significant morphological variation meriting formal taxonomic recognition. Overall, our findings (i) reveal the presence of two freshwater endemic species in the P. syrman group, and pending further investigation, hypothesize the presence of a third cryptic species; (ii) revise and document a narrow distributional range and low diversity for P. iranicus, in contrast to a wider distributional range and high diversity for P. patimari; (iii) suggest that the climatic oscillations of the Pleistocene were associated with the cladogenesis within the P. syrman group; and (iv) allowed for the recognition of conservation units and proposition of management measures.
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Affiliation(s)
- Fatah Zarei
- Ichthyology and Molecular Systematics Research Laboratory, Department of Biology, College of Sciences Shiraz University Shiraz Iran
| | - Hamid Reza Esmaeili
- Ichthyology and Molecular Systematics Research Laboratory, Department of Biology, College of Sciences Shiraz University Shiraz Iran
| | - Reza Sadeghi
- Department of Biology Islamic Azad University Borujerd Iran
| | - Ulrich K Schliewen
- Department of Ichthyology SNSB-Bavarian State Collection of Zoology München Germany
| | | | - Keyvan Abbasi
- Inland Waters Aquaculture Research Center, Iranian Fisheries Sciences Research Institute Agricultural Research, Education and Extension Organization Bandar Anzali Iran
| | - Ali Gholamhosseini
- Ichthyology and Molecular Systematics Research Laboratory, Department of Biology, College of Sciences Shiraz University Shiraz Iran
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Zhang Y, Song W, Cao L, Chen J, Hoffmann AA, Wen J, Wei S. Population differentiation and intraspecific genetic admixture in two
Eucryptorrhynchus
weevils (Coleoptera: Curculionidae) across northern China. Ecol Evol 2022; 12:e8806. [PMID: 35414902 PMCID: PMC8986550 DOI: 10.1002/ece3.8806] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2022] [Revised: 03/19/2022] [Accepted: 03/22/2022] [Indexed: 11/19/2022] Open
Abstract
Increasing damage of pests in agriculture and forestry can arise both as a consequence of changes in local species and through the introduction of alien species. In this study, we used population genetics approaches to examine population processes of two pests of the tree‐of‐heaven trunk weevil (TTW), Eucryptorrhynchus brandti (Harold) and the tree‐of‐heaven root weevil (TRW), E. scrobiculatus (Motschulsky) on the tree‐of‐heaven across their native range of China. We analyzed the population genetics of the two weevils based on ten highly polymorphic microsatellite markers. Population genetic diversity analysis showed strong population differentiation among populations of each species, with FST ranges from 0.0197 to 0.6650 and from −0.0724 to 0.6845, respectively. Populations from the same geographic areas can be divided into different genetic clusters, and the same genetic cluster contained populations from different geographic populations, pointing to dispersal of the weevils possibly being human‐mediated. Redundancy analysis showed that the independent effects of environment and geography could account for 93.94% and 29.70% of the explained genetic variance in TTW, and 41.90% and 55.73% of the explained genetic variance in TRW, respectively, indicating possible impacts of local climates on population genetic differentiation. Our study helps to uncover population genetic processes of these local pest species with relevance to control methods.
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Affiliation(s)
- Yu‐Jie Zhang
- Beijing Key Laboratory for Forest Pests Control, College of Forestry Beijing Forestry University Beijing China
- Institute of Plant Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Wei Song
- Beijing Key Laboratory for Forest Pests Control, College of Forestry Beijing Forestry University Beijing China
- Institute of Plant Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Li‐Jun Cao
- Institute of Plant Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Jin‐Cui Chen
- Institute of Plant Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Ary A. Hoffmann
- School of BioSciences Bio21 Institute The University of Melbourne Parkville Victoria Australia
| | - Jun‐Bao Wen
- Beijing Key Laboratory for Forest Pests Control, College of Forestry Beijing Forestry University Beijing China
| | - Shu‐Jun Wei
- Institute of Plant Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
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5
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Zhai D, Li B, Xiong F, Jiang W, Liu H, Luo C, Duan X, Chen D. Population Genetics Reveals Invasion Origin of Coilia brachygnathus in the Three Gorges Reservoir of the Yangtze River, China. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.783215] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
Non-indigenous fish invasions have posed a serious threat to global fish diversity and aquatic ecosystem security. Studying the invasion sources, pathways, and genetic mechanisms by means of population genetics is helpful in the management and control of non-indigenous fishes. In this study, we used mitochondrial Cyt b gene, D-Loop region and microsatellite markers to analyze the genetic diversity and population structure of 12 Coilia brachygnathus populations from the native and invaded regions of the Yangtze River Basin in order to explore the invasion sources, pathways, and genetic mechanisms of C. brachygnathus in the Three Gorges Reservoir. The results showed that the main invasion sources of C. brachygnathus in the Three Gorges Reservoir were the Poyanghu Lake, Dongtinghu Lake, Changhu Lake, and other populations in the middle reaches of the Yangtze River. The invasion pathway may have involved moving upstream through the operation of ship locks. The genetic diversity of C. brachygnathus in the invasive populations was significantly smaller than in the native populations, indicating a founder effect. The low genetic diversity did not affect the successful invasion, confirming that genetic diversity and successful invasion do not always have a simple causal relationship. These results can provide basic data for the prevention and control of C. brachygnathus in the Three Gorges Reservoir and study case for understanding the mechanism of invasion genetics.
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6
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Neinavaie F, Ibrahim-Hashim A, Kramer AM, Brown JS, Richards CL. The Genomic Processes of Biological Invasions: From Invasive Species to Cancer Metastases and Back Again. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.681100] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022] Open
Abstract
The concept of invasion is useful across a broad range of contexts, spanning from the fine scale landscape of cancer tumors up to the broader landscape of ecosystems. Invasion biology provides extraordinary opportunities for studying the mechanistic basis of contemporary evolution at the molecular level. Although the field of invasion genetics was established in ecology and evolution more than 50 years ago, there is still a limited understanding of how genomic level processes translate into invasive phenotypes across different taxa in response to complex environmental conditions. This is largely because the study of most invasive species is limited by information about complex genome level processes. We lack good reference genomes for most species. Rigorous studies to examine genomic processes are generally too costly. On the contrary, cancer studies are fortified with extensive resources for studying genome level dynamics and the interactions among genetic and non-genetic mechanisms. Extensive analysis of primary tumors and metastatic samples have revealed the importance of several genomic mechanisms including higher mutation rates, specific types of mutations, aneuploidy or whole genome doubling and non-genetic effects. Metastatic sites can be directly compared to primary tumor cell counterparts. At the same time, clonal dynamics shape the genomics and evolution of metastatic cancers. Clonal diversity varies by cancer type, and the tumors’ donor and recipient tissues. Still, the cancer research community has been unable to identify any common events that provide a universal predictor of “metastatic potential” which parallels findings in evolutionary ecology. Instead, invasion in cancer studies depends strongly on context, including order of events and clonal composition. The detailed studies of the behavior of a variety of human cancers promises to inform our understanding of genome level dynamics in the diversity of invasive species and provide novel insights for management.
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7
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Ma Q, Jiao Y, Zhou C, Ren Y. Sexual and spatio-temporal variation of Lake Erie Walleye growth and maturity: A consequence of multiple impacting factors. AQUACULTURE AND FISHERIES 2021. [DOI: 10.1016/j.aaf.2020.06.010] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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8
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Ortego J, Céspedes V, Millán A, Green AJ. Genomic data support multiple introductions and explosive demographic expansions in a highly invasive aquatic insect. Mol Ecol 2021; 30:4189-4203. [PMID: 34192379 DOI: 10.1111/mec.16050] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Revised: 06/01/2021] [Accepted: 06/25/2021] [Indexed: 01/19/2023]
Abstract
The study of the genetic makeup and demographic fate of alien species is essential to understand their capacity to recover from founder effects, adapt to new environmental conditions and, ultimately, become invasive and potentially damaging. Here, we employ genomic data to gain insights into key demographic processes that might help to explain the extraordinarily successful invasion of the Western Mediterranean region by the North American boatman Trichocorixa verticalis (Hemiptera: Corixidae). Our analyses revealed the genetic distinctiveness of populations from the main areas comprising the invasive range and coalescent-based simulations supported that they originated from independent introductions events probably involving different source populations. Testing of alternative demographic models indicated that all populations experienced a strong bottleneck followed by a recent and instantaneous demographic expansion that restored a large portion (>30%) of their ancestral effective population sizes shortly after introductions took place (<60 years ago). Considerable genetic admixture of some populations suggest that hypothetical barriers to dispersal (i.e., land and sea water) are permeable to gene flow and/or that they originated from introductions involving multiple lineages. This study demonstrates the repeated arrival of propagules with different origins and short time lags between arrival and establishment, emphasizing the extraordinary capacity of the species to recover from founder effects and genetically admix in invaded areas. This can explain the demonstrated capacity of this aquatic insect to spread and outcompete native species once it colonizes new suitable regions. Future genomic analyses of native range populations could help to infer the genetic makeup of introduced populations and track invasion routes.
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Affiliation(s)
- Joaquín Ortego
- Department of Integrative Ecology, Estación Biológica de Doñana (EBD-CSIC), Seville, Spain
| | - Vanessa Céspedes
- Department of Wetland Ecology, Estación Biológica de Doñana (EBD-CSIC), Seville, Spain
| | - Andrés Millán
- Department of Ecology and Hydrology, University of Murcia, Murcia, Spain
| | - Andy J Green
- Department of Wetland Ecology, Estación Biológica de Doñana (EBD-CSIC), Seville, Spain
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Gibson MJ, Torres MDL, Brandvain Y, Moyle LC. Introgression shapes fruit color convergence in invasive Galápagos tomato. eLife 2021; 10:64165. [PMID: 34165082 PMCID: PMC8294854 DOI: 10.7554/elife.64165] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/20/2020] [Accepted: 06/23/2021] [Indexed: 12/17/2022] Open
Abstract
Invasive species represent one of the foremost risks to global biodiversity. Here, we use population genomics to evaluate the history and consequences of an invasion of wild tomato-Solanum pimpinellifolium-onto the Galápagos Islands from continental South America. Using >300 archipelago and mainland collections, we infer this invasion was recent and largely the result of a single event from central Ecuador. Patterns of ancestry within the genomes of invasive plants also reveal post-colonization hybridization and introgression between S. pimpinellifolium and the closely related Galápagos endemic Solanum cheesmaniae. Of admixed invasive individuals, those that carry endemic alleles at one of two different carotenoid biosynthesis loci also have orange fruits-characteristic of the endemic species-instead of typical red S. pimpinellifolium fruits. We infer that introgression of two independent fruit color loci explains this observed trait convergence, suggesting that selection has favored repeated transitions of red to orange fruits on the Galápagos.
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Affiliation(s)
- Matthew Js Gibson
- Department of Biology, Indiana University, Bloomington, United States
| | - María de Lourdes Torres
- Universidad San Francisco de Quito (USFQ). Colegio de Ciencias Biológicas y Ambientales, Laboratorio de Biotecnología Vegetal. Campus Cumbayá, Quito, Ecuador.,Galapagos Science Center, Universidad San Francisco de Quito and University of North Carolina at Chapel Hill, Galapagos, Ecuador
| | - Yaniv Brandvain
- Department of Plant Biology, University of Minnesota-Twin Cities, St. Paul, United States
| | - Leonie C Moyle
- Department of Biology, Indiana University, Bloomington, United States
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10
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Comeault AA, Wang J, Tittes S, Isbell K, Ingley S, Hurlbert AH, Matute DR. Genetic Diversity and Thermal Performance in Invasive and Native Populations of African Fig Flies. Mol Biol Evol 2021; 37:1893-1906. [PMID: 32109281 PMCID: PMC7306694 DOI: 10.1093/molbev/msaa050] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022] Open
Abstract
During biological invasions, invasive populations can suffer losses of genetic diversity that are predicted to negatively impact their fitness/performance. Despite examples of invasive populations harboring lower diversity than conspecific populations in their native range, few studies have linked this lower diversity to a decrease in fitness. Using genome sequences, we show that invasive populations of the African fig fly, Zaprionus indianus, have less genetic diversity than conspecific populations in their native range and that diversity is proportionally lower in regions of the genome experiencing low recombination rates. This result suggests that selection may have played a role in lowering diversity in the invasive populations. We next use interspecific comparisons to show that genetic diversity remains relatively high in invasive populations of Z. indianus when compared with other closely related species. By comparing genetic diversity in orthologous gene regions, we also show that the genome-wide landscape of genetic diversity differs between invasive and native populations of Z. indianus indicating that invasion not only affects amounts of genetic diversity but also how that diversity is distributed across the genome. Finally, we use parameter estimates from thermal performance curves for 13 species of Zaprionus to show that Z. indianus has the broadest thermal niche of measured species, and that performance does not differ between invasive and native populations. These results illustrate how aspects of genetic diversity in invasive species can be decoupled from measures of fitness, and that a broad thermal niche may have helped facilitate Z. indianus's range expansion.
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Affiliation(s)
- Aaron A Comeault
- School of Natural Sciences, Bangor University, Bangor, Gwynedd, United Kingdom
| | - Jeremy Wang
- Department of Genetics, University of North Carolina at Chapel Hill, Chapel Hill, NC
| | - Silas Tittes
- Department of Evolution and Ecology, University of California, Davis, Davis, CA
| | - Kristin Isbell
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC
| | - Spencer Ingley
- Faculty of Sciences, Brigham Young University, Hawaii, Laie, HI
| | - Allen H Hurlbert
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC
| | - Daniel R Matute
- Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC
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11
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Chen Y, Zhao L, Teng H, Shi C, Liu Q, Zhang J, Zhang Y. Population genomics reveal rapid genetic differentiation in a recently invasive population of Rattus norvegicus. Front Zool 2021; 18:6. [PMID: 33499890 PMCID: PMC7836188 DOI: 10.1186/s12983-021-00387-z] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/05/2020] [Accepted: 01/17/2021] [Indexed: 12/19/2022] Open
Abstract
Background Invasive species bring a serious effect on local biodiversity, ecosystems, and even human health and safety. Although the genetic signatures of historical range expansions have been explored in an array of species, the genetic consequences of contemporary range expansions have received little attention, especially in mammal species. In this study, we used whole-genome sequencing to explore the rapid genetic change and introduction history of a newly invasive brown rat (Rattus norvegicus) population which invaded Xinjiang Province, China in the late 1970s. Results Bayesian clustering analysis, principal components analysis, and phylogenetic analysis all showed clear genetic differentiation between newly introduced and native rat populations. Reduced genetic diversity and high linkage disequilibrium suggested a severe population bottleneck in this colonization event. Results of TreeMix analyses revealed that the introduced rats were derived from an adjacent population in geographic region (Northwest China). Demographic analysis indicated that a severe bottleneck occurred in XJ population after the split off from the source population, and the divergence of XJ population might have started before the invasion of XJ. Moreover, we detected 42 protein-coding genes with allele frequency shifts throughout the genome for XJ rats and they were mainly associated with lipid metabolism and immunity, which could be seen as a prelude to future selection analyses in the novel environment of XJ. Conclusions This study presents the first genomic evidence on genetic differentiation which developed rapidly, and deepens the understanding of invasion history and evolutionary processes of this newly introduced rat population. This would add to our understanding of how invasive species become established and aid strategies aimed at the management of this notorious pest that have spread around the world with humans. Supplementary Information The online version contains supplementary material available at 10.1186/s12983-021-00387-z.
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Affiliation(s)
- Yi Chen
- The State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.,CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China
| | - Lei Zhao
- The State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China.,CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China
| | - Huajing Teng
- Beijing Institutes of Life Science, Chinese Academy of Sciences, Beijing, China
| | - Chengmin Shi
- CAS Key Laboratory of Genomic and Precision Medicine, Beijing Institute of Genomics, Chinese Academy of Sciences, Beijing, China
| | - Quansheng Liu
- Guangdong Key Laboratory of Animal Conservation and Resource Utilization, Guangdong Public Laboratory of Wild Animal Conservation and Utilization, Institute of Zoology, Guangdong Academy of Sciences, Guangzhou, China
| | - Jianxu Zhang
- The State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China. .,CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China.
| | - Yaohua Zhang
- The State Key Laboratory of Integrated Management of Pest Insects and Rodents, Institute of Zoology, Chinese Academy of Sciences, Beijing, China. .,CAS Center for Excellence in Biotic Interactions, University of Chinese Academy of Sciences, Beijing, China.
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12
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Kucharczyk D, Malinovskyi O, Nowosad J, Kowalska A, Cejko BI. Comparison of responses to artificial spawning of ruffe (Gymnocephalus cernua) specimens captured from their natural habitat to those produced in cultured conditions. Anim Reprod Sci 2020; 225:106684. [PMID: 33360379 DOI: 10.1016/j.anireprosci.2020.106684] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/10/2020] [Revised: 12/16/2020] [Accepted: 12/17/2020] [Indexed: 12/14/2022]
Abstract
Although ruffe (Gymnocephalus cernua) are widely distributed in Eurasia, in some regions (i.e., North America) ruffe are considered an invasive species. There have been no reports on artificial reproduction of this species. A study, therefore, was conducted to evaluate reproduction of ruffe with results of specimens captured from their natural habitat and cultured (F1 generation) specimens being compared. Spawning specimens from both stocks were treated with hormonal preparations: carp pituitary homogenate (CPH), Ovopel, Ovaprim and human chorionic gonadotropin (hCG) and results were analyzed by comparing response to the specimens of control groups. Spermiation outcomes and sperm motility of the captured and cultured ruffe were similar and with all hormonal treatments, there was a slightly greater sperm motility (55.6 %-57.1 %) in comparison to specimens of control groups (46.7 %-47.1 %). For captured specimens, there was no asynchronous development of oocytes, whereas in cultured specimens 32 % of females had asynchronous development of oocytes. The ovulation rate in specimens of all treated groups was 100 %, whereas specimens in the control groups did not reproductively mature and have ovulations. The latency time from time of hormonal treatments to initiation of reproductive functions depended on the spawning agent used and oocyte maturation stage and there was the shortest latency after using CPH and the longest with hCG treatment. The embryo survival and hatching rates varied with use of different hormonal preparations to induce reproduction: greatest hatching rates with hCG treatment (86.4 %-88.9 %), followed by Ovaprim (78.2 %-80.2 %) and least hatching rate with Ovopel and CPH treatments (66.0 %-67.1 % and 64.0 %-66.0 %, respectively).
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Affiliation(s)
- Dariusz Kucharczyk
- Department of Ichthyology and Aquaculture, Faculty of Animal Bioengineering, University of Warmia and Mazury, Olsztyn, Poland.
| | - Oleksandr Malinovskyi
- Faculty of Fisheries and Protection of Waters, South Bohemian Research Center of Aquaculture and Biodiversity of Hydrocenoses, Research Institute of Fish Culture and Hydrobiology, University of South Bohemia in Ceske Budejovice, Vodnany, Czech Republic
| | - Joanna Nowosad
- Department of Ichthyology and Aquaculture, Faculty of Animal Bioengineering, University of Warmia and Mazury, Olsztyn, Poland
| | - Agata Kowalska
- Department of Fisheries Bioeconomics, The Stanisław Sakowicz Inland Fisheries Institute, Olsztyn, Poland
| | - Beata Irena Cejko
- Department of Gamete and Embryo Biology, Institute of Animal Reproduction and Food Research, Polish Academy of Science, Olsztyn, Poland
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Boissin E, Neglia V, Baksay S, Micu D, Bat L, Topaloglu B, Todorova V, Panayotova M, Kruschel C, Milchakova N, Voutsinas E, Beqiraj S, Nasto I, Aglieri G, Taviani M, Zane L, Planes S. Chaotic genetic structure and past demographic expansion of the invasive gastropod Tritia neritea in its native range, the Mediterranean Sea. Sci Rep 2020; 10:21624. [PMID: 33303767 PMCID: PMC7730386 DOI: 10.1038/s41598-020-77742-3] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2019] [Accepted: 11/16/2020] [Indexed: 11/21/2022] Open
Abstract
To better predict population evolution of invasive species in introduced areas it is critical to identify and understand the mechanisms driving genetic diversity and structure in their native range. Here, we combined analyses of the mitochondrial COI gene and 11 microsatellite markers to investigate both past demographic history and contemporaneous genetic structure in the native area of the gastropod Tritia neritea, using Bayesian skyline plots (BSP), multivariate analyses and Bayesian clustering. The BSP framework revealed population expansions, dated after the last glacial maximum. The haplotype network revealed a strong geographic clustering. Multivariate analyses and Bayesian clustering highlighted the strong genetic structure at all scales, between the Black Sea and the Adriatic Sea, but also within basins. Within basins, a random pattern of genetic patchiness was observed, suggesting a superimposition of processes involving natural biological effects (no larval phase and thus limited larval dispersal) and putative anthropogenic transport of specimens. Contrary to the introduced area, no isolation-by-distance patterns were recovered in the Mediterranean or the Black Seas, highlighting different mechanisms at play on both native and introduced areas, triggering unknown consequences for species’ evolutionary trajectories. These results of Tritia neritea populations on its native range highlight a mixture of ancient and recent processes, with the effects of paleoclimates and life history traits likely tangled with the effects of human-mediated dispersal.
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Affiliation(s)
- Emilie Boissin
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.
| | - Valentina Neglia
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France
| | - Sandra Baksay
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France.,Laboratoire Evolution & Diversite Biologique, University TOULOUSE III - Paul Sabatier, 118 route de Narbonne, 31062, Toulouse Cedex 09, France
| | - Dragos Micu
- Romanian Waters National Authority, 127 Mircea cel Batran Blvd., 900592, Constanţa, Romania
| | - Levent Bat
- Department of Hydrobiology, Sinop University Faculty of Fisheries, 57000, Sinop, Turkey
| | - Bulent Topaloglu
- Faculty of Aquatic Sciences, Istanbul University, Ordu St No: 8, 34134, Istanbul, Turkey
| | - Valentina Todorova
- Institute of Oceanology-BAS (IO-BAS), P.O. Box 152, 9000, Varna, Bulgaria
| | - Marina Panayotova
- Institute of Oceanology-BAS (IO-BAS), P.O. Box 152, 9000, Varna, Bulgaria
| | - Claudia Kruschel
- University of Zadar, Ul. Mihovila Pavlinovića, 23000, Zadar, Croatia
| | - Nataliya Milchakova
- Institute of Biology of the Southern Seas, 2 Nakhimov Ave., Sevastopol, Russia, 299011
| | - Emanuela Voutsinas
- Institute of Oceanography, Hellenic Centre for Marine Research, P.O. Box 712, 19013, Anavyssos, Greece
| | - Sajmir Beqiraj
- Faculty of Natural Sciences, Department of Biology, University of Tirana, Bulevardi "Zogu I Parë", 25/1, 1001, Tiranë, Albania
| | - Ina Nasto
- Department of Biology, Faculty of Technical Sciences, Vlora University, 9401, Vlora, Albania
| | - Giorgio Aglieri
- Department of Earth and Marine Sciences (DiSTeM), University of Palermo, via Archirafi 28, 90123, Palermo, Italy.,Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Piazzale Flaminio 9, 00196, Rome, Italy
| | - Marco Taviani
- Institute of Marine Sciences (ISMAR), CNR, via Gobetti 101, 40129, Bologna, Italy.,Stazione Zoologica Anton Dohrn, Villa Comunale, 80121, Napoli, Italy.,Department of Biology, Woods Hole Oceanographic Institution, 266 Woods Hole Road, Woods Hole, MA, 02543, USA
| | - Lorenzo Zane
- Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Piazzale Flaminio 9, 00196, Rome, Italy.,Dipartimento di Biologia, Università di Padova, via U. Bassi/58B, 35121, Padua, Italy
| | - Serge Planes
- PSL Research University: EPHE-UPVD-CNRS, USR 3278 CRIOBE, Laboratoire d'Excellence « CORAIL », Université de Perpignan, 52 Avenue Paul Alduy, 66860, Perpignan Cedex, France
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14
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Competition between Invasive Ruffe (Gymnocephalus cernua) and Native Yellow Perch (Perca flavescens) in Experimental Mesocosms. FISHES 2020. [DOI: 10.3390/fishes5040033] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Ruffe (Gymnocephalus cernua) were introduced to North America from Europe in the mid-1980s and based on similar diets and habit use may compete with yellow perch (Perca flavescens). To examine competitive interactions between invasive ruffe and native yellow perch, individually marked perch and ruffe were placed in mesocosms in a small lake. Mesocosms allowed fish to interact and feed on the natural prey populations enclosed. In the first experiment, four treatments were assessed: 28 perch, 14 perch + 14 ruffe, 14 perch, and 7 perch + 7 ruffe. Yellow perch growth was significantly lower in the presence of ruffe (ANOVA, p = 0.005) than in treatments containing only perch. In a second experiment, an increasing density of one species was superimposed upon a constant density of the other in parallel treatment series. Growth rates of both ruffe and perch declined when ruffe density was increased (t test, p = 0.006). However, neither ruffe nor perch growth was affected by increasing perch density. Total stomach content mass of perch was significantly decreased by ruffe in both years (p < 0.02), but no effects of ruffe on the composition of perch diets were observed. Ruffe growth and food consumption was greater than that of perch for both experiments. Ruffe can outcompete yellow perch when both species depend on a limited benthic food resource. Thus there is reason for concern for the ecological effects of ruffe if they expand their range into Lake Erie or North American inland lakes that contain yellow perch.
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Jażdżewska AM, Rewicz T, Mamos T, Wattier R, Bącela-Spychalska K, Grabowski M. Cryptic diversity and mtDNA phylogeography of the invasive demon shrimp, Dikerogammarus haemobaphes (Eichwald, 1841), in Europe. NEOBIOTA 2020. [DOI: 10.3897/neobiota.57.46699] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
The regions of the Black, Caspian, and Azov seas are known for being both (i) the place of extensive crustacean radiation dated to the times of Paratethys and Sarmatian basins, and (ii) present donors of alien and invasive taxa to many areas worldwide. One amphipod morphospecies,Dikerogammarus haemobaphes, is known both as native to rivers draining to the Black and Caspian seas as well as a successful invader (nicknamed demon shrimp) in Central and Western European rivers. Based on mitochondrial (COI and 16S) and nuclear (28S) datasets and 41 sampling sites, representing both the native (19) and the invaded (22) range, we assessed cryptic diversity, phylogeography and population genetics of this taxon. First, we revealed the presence of two divergent lineages supported by all markers and all species delimitation methods. The divergence between the lineages was high (18.3% Kimura 2-parameter distance for COI) and old (ca. 5.1 Ma), suggesting the presence of two cryptic species withinD. haemobaphes. Lineage A was found only in a few localities in the native range, while lineage B was widespread both in the native and in the invaded range. Although genetic divergence within lineage B was shallow, geographic distribution of 16S and COI haplotypes was highly heterogeneous, leading us to the definition of four Geo-Demographic Units (GDUs). Two GDUs were restricted to the native range: GDU-B1 was endemic for the Durugöl (aka Duruşu) Liman in Turkey, whereas GDU-B2 occurred only in the Dniester River. GDU-B3 was both present in several localities in the native range in the Black Sea drainage area and widespread in Central and Western Europe. The GDU-B4 was found exclusively in the Moskva River in Russia. Extended Bayesian Skyline Plot indicated steady growth of GDU-B3 population size since 30 ka, pointing to the rather old history of its expansion, first in the late Pleistocene in the native range and nowadays in Central and Western Europe. The analysis of haplotype distribution across the present distribution range clearly showed two invasion routes to Central and Western Europe. The first one, originating from the lower Dnieper, allowed the demon shrimp to colonize Polish rivers and the Mittellandkanal in Germany. The second one, originating from the Danube delta, allowed to colonize the water bodies in the upper Danube basin. The UK population has originated from the Central Corridor, as only a haplotype found exclusively along this route was recorded in the UK. Population genetics analysis showed that the invasion of the demon shrimp along the Central Corridor was not associated with the loss of genetic diversity, which might contribute to the success of this invader in the newly colonized areas.
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16
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Lu B, Peng Z, Lu H, Yang F, Lin P, Chu X, He X, Tang J. Inter-country trade, genetic diversity and bio-ecological parameters upgrade pest risk maps for the coconut hispid Brontispa longissima. PEST MANAGEMENT SCIENCE 2020; 76:1483-1491. [PMID: 31659862 DOI: 10.1002/ps.5663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Revised: 10/12/2019] [Accepted: 10/22/2019] [Indexed: 06/10/2023]
Abstract
BACKGROUND Invasions of a number of tree-feeding beetles have increased globally and pose a mounting threat to the world's trees, production forests and natural habitats. An in-depth understanding of the determinants of invasion potential of a given species and invasibility of novel environments can help forecast future invasions and avert undesirable socio-economic impacts. Here, we quantitatively assess the (multivariate) drivers of historic invasions of the coconut hispid Brontispa longissima (Coleoptera: Chrysomelidae) across the Asia-Pacific region and critically assess its invasion potential for other key coconut-growing regions. RESULTS Genetic variation of B. longissima in its invaded range indicated multiple incursions, likely associated with (short-range) natural dispersal and (long-range) trade in ornamental palms and coconut plantlets. Interception records at China's ports of entry accentuate the role of traded planting material. The high fecundity and prolonged, yet adaptable, oviposition period of B. longissima further enhance the invasiveness of this species and aid its successful establishment. Coconut-growing areas are identified with high climatic suitability for B. longissima, and where strengthened biosecurity protocols can prevent future invasions. CONCLUSION A combined assessment of inter-country trade patterns, population genetics and species bio-ecology (e.g. climate-related development) illuminates the dispersal pathways of invasive species, assesses invasibility of particular geographies, guides quarantine interventions and thus can effectively avert future invasions. © 2019 Society of Chemical Industry.
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Affiliation(s)
- Baoqian Lu
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Zhengqiang Peng
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Hui Lu
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Fan Yang
- College of Forestry, Hainan University, Haikou, China
| | - Peiqun Lin
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Xiaoqiang Chu
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Xing He
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
| | - Jihong Tang
- Key Laboratory of Integrated Pest Management on Tropical Crops, Environment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, China
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17
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Segura-Zarzosa IE, Rodríguez-Almaraz GA, Obregón-Barboza H, Murugan G, Treviño-Flores JA, Maeda-Martínez AM. New records of exotic species of Oniscidea (Crustacea: Isopoda) from northern Mexico. REV MEX BIODIVERS 2020. [DOI: 10.22201/ib.20078706e.2020.91.3098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
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18
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Stepien CA, Snyder MR, Elz AE. Invasion genetics of the silver carp Hypophthalmichthys molitrix across North America: Differentiation of fronts, introgression, and eDNA metabarcode detection. PLoS One 2019; 14:e0203012. [PMID: 30917127 PMCID: PMC6436794 DOI: 10.1371/journal.pone.0203012] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2018] [Accepted: 03/05/2019] [Indexed: 11/19/2022] Open
Abstract
In the 1970s, the introduced silver carp Hypophthalmichthys molitrix (which is indigenous to eastern Asia) escaped from southern U.S. aquaculture to spread throughout the Mississippi River basin, and since has steadily moved northward. This large, prolific filter-feeder reduces food availability for other fishes. It now has reached the threshold of the Laurentian Great Lakes, where it likely will significantly impact food chains and fisheries. Our study evaluates population genetic variability and differentiation of the silver carp using 10 nuclear DNA microsatellite loci, and sequences of two mitochondrial genes-cytochrome b and cytochrome c oxidase subunit 1, along with the nuclear ribosomal protein S7 gene intron 1. We analyze population samples from: two primary Great Lakes' invasion fronts (at the Illinois River outside of Chicago, IL in Lake Michigan and in the Wabash River, which leads into the Maumee River and western Lake Erie), the original establishment "core" in the Lower Mississippi River, and expansion areas in the Upper Mississippi and Missouri rivers. We analyze and compare our results with bighead and other invasive carps, and cyprinid relatives. Results reveal that the silver carp invasion possesses moderate levels of genetic diversity, with more mtDNA haplotypes and unique microsatellite alleles in the "core" Lower Mississippi River population, which also diverges the most. The two invasion fronts also significantly genetically differ. About 3% of individuals (including all populations except the Illinois River) contain a unique and very divergent mtDNA haplotype, which likely stems from historic introgression in Asia with female largescale silver carp H. harmandi. The nuclear microsatellites and S7 sequences of the introgressed individuals do not differ from silver carp and are very distant from bighead carp. These sequence variation data are employed to design and evaluate a targeted high-throughput metabarcoding sequence assay that identifies and distinguishes among species of invasive carps (i.e., silver, bighead, grass, black, and common carps, along with goldfish), as well as native cyprinids, using cytochrome b. Our assay further differentiates among selected silver carp haplotypes (including between H. molitrix and H. harmandi), for use in population genetics and future analyses of spread pathways. We test and evaluate this assay on environmental (e)DNA water samples from 48 bait shops in the Great Lakes' region (along the Lake Erie, Lake St. Clair, and Wabash River watersheds), using positive and negative controls and custom bioinformatic processing. Test results discern silver carp eDNA in four of the shops-three in Lake Erie and one in the Wabash River watershed-and bighead carp from one of the same Lake Erie venues, suggesting that retailers (who often source from established southerly populations) comprise another introduction vector. Our overall findings thus provide key population genetic and phylogenetic data for understanding and tracing introductions, vectors, and spread pathways for silver carp, their variants, and their relatives.
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Affiliation(s)
- Carol A. Stepien
- NOAA Pacific Marine Environmental Laboratory, Genetics and Genomics Group (G3), Seattle, WA, United States of America
| | - Matthew R. Snyder
- NOAA Pacific Marine Environmental Laboratory, Genetics and Genomics Group (G3), Seattle, WA, United States of America
| | - Anna E. Elz
- NOAA Pacific Marine Environmental Laboratory, Genetics and Genomics Group (G3), Seattle, WA, United States of America
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19
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Park J, Kim Y. The second complete chloroplast genome of Dysphania pumilio (R.Br.) mosyakin & clemants (Amranthaceae): intraspecies variation of invasive weeds. Mitochondrial DNA B Resour 2019. [DOI: 10.1080/23802359.2019.1598807] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022] Open
Affiliation(s)
- Jongsun Park
- InfoBoss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
| | - Yongsung Kim
- InfoBoss Co., Ltd, Seoul, Republic of Korea
- InfoBoss Research Center, Seoul, Republic of Korea
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20
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Wang Y, Lu J, Beattie GA, Islam MR, Om N, Dao HT, Van Nguyen L, Zaka SM, Guo J, Tian M, Deng X, Tan S, Holford P, He Y, Cen Y. Phylogeography of Diaphorina citri (Hemiptera: Liviidae) and its primary endosymbiont, 'Candidatus Carsonella ruddii': an evolutionary approach to host-endosymbiont interaction. PEST MANAGEMENT SCIENCE 2018; 74:2185-2194. [PMID: 29575777 DOI: 10.1002/ps.4917] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Revised: 02/28/2018] [Accepted: 03/12/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND In insects, little is known about the co-evolution between their primary endosymbionts and hosts at the intraspecific level. This study examined co-diversification between the notorious agricultural pest Diaphorina citri and its primary endosymbionts (P-endosymbiont), 'Candidatus Carsonella ruddii' at the population level. RESULTS Maximum likelihood, haplotype network, principal components and Bayesian clustering identified three lineages for D. citri and its P-endosymbiont: a Western clade containing individuals from Pakistan, Bhutan (Phuentsholing), Vietnam (Son La), USA, Myanmar and China (Ruili, Yunnan); a Central clade, with accessions originating from Southwest China, Bhutan (Tsirang) and Bangladesh; and an Eastern clade containing individuals from Southeast Asia, and East and South China. A more diverse genetic structure was apparent in the host mitochondrial DNA than their P-endosymbionts; however, the two sets of data were strongly congruent. CONCLUSION This study provides evidence for the co-diversification of D. citri and its P-endosymbiont during the migration from South Asia to East and Southeast Asia. We also suggest that the P-endosymbiont may facilitate investigations into the genealogy and migration history of the host. The biogeography of D. citri and its P-endosymbiont indicated that D. citri colonized and underwent a secondary dispersal from South Asia to East and Southeast Asia. © 2018 Society of Chemical Industry.
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Affiliation(s)
- Yanjing Wang
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
| | - Jinming Lu
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
| | - George Ac Beattie
- School of Science and Health, Western Sydney University, Penrith, Australia
| | - Mohammad R Islam
- Laboratory of Plant Bacteriology and Biotechnology, Department of Plant Pathology, Bangladesh Agricultural University, Mymensingh, Bangladesh
| | - Namgay Om
- National Plant Protection Centre, Department of Agriculture, Ministry of Agriculture and Forests, Thimphu, Bhutan
| | - Hang T Dao
- Plant Protection Research Institute, Hanoi, Vietnam
| | | | - Syed M Zaka
- Faculty of Agricultural Science and Technology, Department of Entomology, Bahauddin Zakariya University, Multan, Pakistan
| | - Jun Guo
- Ruili Experiment Station, Institute of Tropical and Subtropical Cash Crops, Yunnan Academy of Agriculture Science, Ruili, China
| | - Mingyi Tian
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
| | - Xiaoling Deng
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
| | - Shunyun Tan
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
| | - Paul Holford
- School of Science and Health, Western Sydney University, Penrith, Australia
| | - Yurong He
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
| | - Yijing Cen
- Citrus Huanglongbing Research Laboratory/Key Laboratory of Bio-Pesticide Innovation and Application, South China Agricultural University, Guangzhou, China
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21
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Masson L, Masson G, Beisel JN, Gutowsky LFG, Fox MG. Consistent life history shifts along invasion routes? An examination of round goby populations invading on two continents. DIVERS DISTRIB 2018. [DOI: 10.1111/ddi.12726] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Affiliation(s)
- L. Masson
- Environmental and Life Sciences Graduate Program; Trent University; Peterborough ON Canada
| | - G. Masson
- Laboratoire Interdisciplinaire des Environnements Continentaux (LIEC); UMR 7360 CNRS Université de Lorraine; UFR Sci. F.A.; Metz France
| | - J. N. Beisel
- Ecole Nationale du Génie de l'Eau et de l'Environnement de Strasbourg (ENGEES); Strasbourg France
- CNRS, ENGEES, LIVE UMR 7362; Université de Strasbourg; Strasbourg France
| | - L. F. G. Gutowsky
- Ontario Ministry of Natural Resources and Forestry; Peterborough ON Canada
| | - M. G. Fox
- School of the Environment and Department of Biology; Trent University; Peterborough ON Canada
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22
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Calazans C SH, Walters LJ, Fernandes FC, Ferreira CEL, Hoffman EA. Genetic structure provides insights into the geographic origins and temporal change in the invasive charru mussel (Sururu) in the southeastern United States. PLoS One 2017; 12:e0180619. [PMID: 28686694 PMCID: PMC5501563 DOI: 10.1371/journal.pone.0180619] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2017] [Accepted: 06/19/2017] [Indexed: 11/22/2022] Open
Abstract
In 2004, Mytella charruana (d'Orbigny, 1842) (Mollusca: Bivalvia: Mytilidae) became established along the coast of the southeastern United States (SE-US). Using mitochondrial DNA sequencing (cytochrome c oxidase subunit I), we compared genetic variation throughout its native range in South America to its invasive range in the SE-US. Samples from the SE-US were collected in 2006 and 2010 enabling a temporal comparison to evaluate possible genetic changes of the invasive population. We addressed two questions. First, what are the potential source populations (or geographic regions) for the SE-US invasion? Second, how has genetic diversity changed between the two sampling periods within the SE-US? We identified a total of 72 haplotypes, 64 of which were isolated to geographic sites and only 8 were shared among sites. The highly structured native range provides insight into the origin of invasive populations where our results suggest that the introduced SE-US population originated from multiple source populations with the Panama region as the primary source. Additionally, our results indicate that genetic composition of the non-native populations was unchanged between the two sampling periods. Mytella charruana exhibit a significant pattern of genetic structure among natural populations, owing to biogeographic barriers that limit natural dispersal, and an ability to persist in novel habitats, owing to a suite of life-history characters that favor survival under variable conditions. Overall, this study explains why M. charruana may become an increasing threat to locations founded by anthropogenic transportation.
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Affiliation(s)
- Sávio H. Calazans C
- Department de Biologia Marinha, Universidade Federal Fluminense - UFF, Niterói, Rio de Janeiro, Brazil
- Department de Oceanography, Instituto de Estudos do Mar Almirante Paulo Moreira - IEAPM, Arraial do Cabo, Rio de Janeiro, Brazil
| | - Linda J. Walters
- Department of Biology, University of Central Florida, Orlando, Florida, United States of America
| | - Flavio C. Fernandes
- Department de Oceanography, Instituto de Estudos do Mar Almirante Paulo Moreira - IEAPM, Arraial do Cabo, Rio de Janeiro, Brazil
| | - Carlos E. L. Ferreira
- Department de Biologia Marinha, Universidade Federal Fluminense - UFF, Niterói, Rio de Janeiro, Brazil
| | - Eric A. Hoffman
- Department of Biology, University of Central Florida, Orlando, Florida, United States of America
- * E-mail:
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Phylogeography and population genetics of introduced Silver Carp (Hypophthalmichthys molitrix) and Bighead Carp (H. nobilis) in North America. Biol Invasions 2017. [DOI: 10.1007/s10530-017-1484-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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24
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Cao LJ, Wang ZH, Gong YJ, Zhu L, Hoffmann AA, Wei SJ. Low genetic diversity but strong population structure reflects multiple introductions of western flower thrips (Thysanoptera: Thripidae) into China followed by human-mediated spread. Evol Appl 2017; 10:391-401. [PMID: 28352298 PMCID: PMC5367077 DOI: 10.1111/eva.12461] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 01/18/2017] [Accepted: 01/20/2017] [Indexed: 01/20/2023] Open
Abstract
Historical invasion scenarios based on observational records are usually incomplete and biased, but these can be supplemented by population genetic data. The western flower thrips (WFT), Frankliniella occidentalis, invaded China in the last 13 years and has rapidly become one of the most serious pests in the country. To assess whether this invasion involved a single event or multiple events, we examined patterns of genetic diversity and population structure of WFT across 12 Chinese populations and a native US population based on mitochondrial DNA and/or 18 microsatellite loci. The average allelic richness and haplotype diversity in Chinese populations were significantly lower than in a population from its native range. The distribution of mitochondrial haplotypes suggested multiple independent invasions of WFT into China, including two invasions into the Beijing region. Based on microsatellite data, two distinct clusters were identified, with both of them splitting further into two clusters; in the Beijing region, the microsatellite data also provided evidence for two introductions. Both the absence of isolation by distance and the fact that distant populations were similar genetically suggest patterns of WFT movement linked to human activities. Our study therefore suggests multiple introductions of WFT into China and human-assisted spread.
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Affiliation(s)
- Li-Jun Cao
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Ze-Hua Wang
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Ya-Jun Gong
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Liang Zhu
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
| | - Ary Anthony Hoffmann
- School of BioSciences Bio21 Institute The University of Melbourne Melbourne Vic. Australia
| | - Shu-Jun Wei
- Institute of Plant and Environmental Protection Beijing Academy of Agriculture and Forestry Sciences Beijing China
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Snyder MR, Stepien CA. Genetic patterns across an invasion's history: a test of change versus stasis for the Eurasian round goby in North America. Mol Ecol 2017; 26:1075-1090. [PMID: 28029720 DOI: 10.1111/mec.13997] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2016] [Revised: 12/05/2016] [Accepted: 12/12/2016] [Indexed: 01/11/2023]
Abstract
Biological invasions comprise accidental evolutionary experiments, whose genetic compositions underlie relative success, spread and persistence in new habitats. However, little is known about whether, or how, their population genetic patterns change temporally and/or spatially across the invasion's history. Theory predicts that most would undergo founder effect, exhibit low genetic divergence across the new range and gain variation over time via new arriving propagules. To test these predictions, we analyse population genetic diversity and divergence patterns of the Eurasian round goby Neogobius melanostomus across the two decades of its North American invasion in the Laurentian Great Lakes, comparing results from 13 nuclear DNA microsatellite loci and mitochondrial DNA cytochrome b sequences. We test whether 'genetic stasis', 'genetic replacement' and/or 'genetic supplement' scenarios have occurred at the invasion's core and expansion sites, in comparison with its primary native source population in the Dnieper River, Black Sea. Results reveal pronounced genetic divergence across the exotic range, with population areas remaining genetically distinct and statistically consistent across two decades, supporting 'genetic stasis' and 'founder takes most'. The original genotypes continue to predominate, whose high population growth likely outpaced the relative success of later arrivals. The original invasion core has stayed the most similar to the native source. Secondary expansion sites indicate slight allelic composition convergence towards the core population over time, attributable to some early 'genetic supplementation'. The geographic and temporal coverage of this investigation offers a rare opportunity to discern population dynamics over time and space in context of invasion genetic theory vs. reality.
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Affiliation(s)
- Matthew R Snyder
- Great Lakes Genetics/Genomics Laboratory, The Lake Erie Center and Department of Environmental Sciences, The University of Toledo, Toledo, OH, 43606, USA.,NOAA Pacific Marine Environmental Laboratory, 7600 Sand Point Way NE, Seattle, WA, 98115, USA
| | - Carol A Stepien
- Great Lakes Genetics/Genomics Laboratory, The Lake Erie Center and Department of Environmental Sciences, The University of Toledo, Toledo, OH, 43606, USA.,NOAA Pacific Marine Environmental Laboratory, 7600 Sand Point Way NE, Seattle, WA, 98115, USA
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Voroshilova IS. Genetic markers in studies on dreissenides (Dreissenidae, Bivalvia). BIOL BULL+ 2016. [DOI: 10.1134/s1062359016100216] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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27
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Cao LJ, Wei SJ, Hoffmann AA, Wen JB, Chen M. Rapid genetic structuring of populations of the invasive fall webworm in relation to spatial expansion and control campaigns. DIVERS DISTRIB 2016. [DOI: 10.1111/ddi.12486] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023] Open
Affiliation(s)
- Li-Jun Cao
- Beijing Key Laboratory for Forest Pest Control; College of Forestry; Beijing Forestry University; Beijing 100083 China
- Institute of Plant and Environmental Protection; Beijing Academy of Agriculture and Forestry Sciences; Beijing 100097 China
| | - Shu-Jun Wei
- Institute of Plant and Environmental Protection; Beijing Academy of Agriculture and Forestry Sciences; Beijing 100097 China
| | - Ary Anthony Hoffmann
- School of BioSciences; Bio21 Institute; The University of Melbourne; Melbourne Vic 3010 Australia
| | - Jun-Bao Wen
- Beijing Key Laboratory for Forest Pest Control; College of Forestry; Beijing Forestry University; Beijing 100083 China
| | - Min Chen
- Beijing Key Laboratory for Forest Pest Control; College of Forestry; Beijing Forestry University; Beijing 100083 China
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A sensitive environmental DNA (eDNA) assay leads to new insights on Ruffe (Gymnocephalus cernua) spread in North America. Biol Invasions 2016. [DOI: 10.1007/s10530-016-1209-z] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
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29
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Barros T, Ferreira E, Rocha RG, Gaubert P, Bandeira V, Souto L, Mira A, Fonseca C. Genetic signature of the northward expansion of the Egyptian mongoose Herpestes ichneumon(Herpestidae) in the Iberian Peninsula. Biol J Linn Soc Lond 2016. [DOI: 10.1111/bij.12743] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Tânia Barros
- Departamento de Biologia & Centros de Estudos do Ambiente e do Mar (CESAM); Universidade de Aveiro; 3810-193 Aveiro Portugal
| | - Eduardo Ferreira
- Departamento de Biologia & Centros de Estudos do Ambiente e do Mar (CESAM); Universidade de Aveiro; 3810-193 Aveiro Portugal
| | - Rita Gomes Rocha
- Departamento de Biologia & Centros de Estudos do Ambiente e do Mar (CESAM); Universidade de Aveiro; 3810-193 Aveiro Portugal
- Departamento de Ciências Biológicas; Centro de Ciências Humanas e Naturais; Universidade Federal do Espírito Santo; Av. Fernando Ferrari 514, Goiabeiras 29075-910 Vitória ES Brazil
| | - Philippe Gaubert
- Institut des Sciences de l'Evolution de Montpellier (ISEM), UM-CNRS-IRD-CIRAD-EPHE; Université de Montpellier; Place Eugène Bataillon - CC 64; 34095 Montpellier, Cedex 05 France
| | - Victor Bandeira
- Departamento de Biologia & Centros de Estudos do Ambiente e do Mar (CESAM); Universidade de Aveiro; 3810-193 Aveiro Portugal
| | - Luis Souto
- Departamento de Biologia & Centros de Estudos do Ambiente e do Mar (CESAM); Universidade de Aveiro; 3810-193 Aveiro Portugal
| | - António Mira
- Unidade de Biologia da Conservação; Universidade de Évora; 7002-554 Évora Portugal
| | - Carlos Fonseca
- Departamento de Biologia & Centros de Estudos do Ambiente e do Mar (CESAM); Universidade de Aveiro; 3810-193 Aveiro Portugal
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Devloo-Delva F, Miralles L, Ardura A, Borrell YJ, Pejovic I, Tsartsianidou V, Garcia-Vazquez E. Detection and characterisation of the biopollutant Xenostrobus securis (Lamarck 1819) Asturian population from DNA Barcoding and eBarcoding. MARINE POLLUTION BULLETIN 2016; 105:23-29. [PMID: 26971231 DOI: 10.1016/j.marpolbul.2016.03.008] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2016] [Revised: 03/01/2016] [Accepted: 03/04/2016] [Indexed: 06/05/2023]
Abstract
DNA efficiently contributes to detect and understand marine invasions. In 2014 the potential biological pollutant pygmy mussel (Xenostrobus securis) was observed for the first time in the Avilés estuary (Asturias, Bay of Biscay). The goal of this study was to assess the stage of invasion, based on demographic and genetic (DNA Barcoding) characteristics, and to develop a molecular tool for surveying the species in environmental DNA. A total of 130 individuals were analysed for the DNA Barcode cytochrome oxidase I gene in order to determine genetic diversity, population structure, expansion trends, and to inferring introduction hits. Reproduction was evidenced by bimodal size distributions of 1597 mussels. High population genetic variation and genetically distinct clades might suggest multiple introductions from several source populations. Finally, species-specific primers were developed within the DNA barcode for PCR amplification from water samples in order to enabling rapid detection of the species in initial expansion stages.
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Affiliation(s)
- Floriaan Devloo-Delva
- Department of Functional Biology, University of Oviedo, C/ Julián Clavería s/n, 33006 Oviedo, Spain
| | - Laura Miralles
- Department of Functional Biology, University of Oviedo, C/ Julián Clavería s/n, 33006 Oviedo, Spain
| | - Alba Ardura
- USR3278-CRIOBE-CNRS-EPHE. Laboratoire d'excellence "CORAIL". Université de Perpignan-CBETM. 58 Rue Paul Alduy. 66860-Perpignan, CEDEX. France
| | - Yaisel J Borrell
- Department of Functional Biology, University of Oviedo, C/ Julián Clavería s/n, 33006 Oviedo, Spain
| | - Ivana Pejovic
- Department of Functional Biology, University of Oviedo, C/ Julián Clavería s/n, 33006 Oviedo, Spain
| | - Valentina Tsartsianidou
- Department of Functional Biology, University of Oviedo, C/ Julián Clavería s/n, 33006 Oviedo, Spain
| | - Eva Garcia-Vazquez
- Department of Functional Biology, University of Oviedo, C/ Julián Clavería s/n, 33006 Oviedo, Spain.
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Barros T, Gaubert P, Rocha RG, Bandeira V, Souto L, Mira A, Fonseca C. Mitochondrial demographic history of the Egyptian mongoose (Herpestes ichneumon), an expanding carnivore in the Iberian Peninsula. Mamm Biol 2016. [DOI: 10.1016/j.mambio.2015.09.003] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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Rewicz T, Wattier R, Grabowski M, Rigaud T, Bącela-Spychalska K. Out of the Black Sea: phylogeography of the invasive killer shrimp Dikerogammarus villosus across Europe. PLoS One 2015; 10:e0118121. [PMID: 25692865 PMCID: PMC4333216 DOI: 10.1371/journal.pone.0118121] [Citation(s) in RCA: 50] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2014] [Accepted: 01/07/2015] [Indexed: 12/02/2022] Open
Abstract
The amphipod Dikerogammarus villosus has colonized most of the European main inland water bodies in less than 20 years, having deteriorating effect on the local benthic communities. Our aim was to reveal the species phylogeography in the native Black Sea area, to define the source populations for the colonization routes in continental Europe and for the newly established UK populations. We tested for the loss of genetic diversity between source and invasive populations as well as along invasion route. We tested also for isolation by distance. Thirty three native and invasive populations were genotyped for mtDNA (COI, 16S) and seven polymorphic nuclear microsatellites to assess cryptic diversity (presence of deeply divergent lineages), historical demography, level of diversity within lineage (e.g., number of alleles), and population structure. A wide range of methods was used, including minimum spanning network, molecular clock, Bayesian clustering and Mantel test. Our results identified that sea level and salinity changes during Pleistocene impacted the species phylogeography in the Black Sea native region with four differentiated populations inhabiting, respectively, the Dnieper, Dniester, Danube deltas and Durungol liman. The invasion of continental Europe is associated with two sources, i.e., the Danube and Dnieper deltas, which gave origin to two independent invasion routes (Western and Eastern) for which no loss of diversity and no isolation by distance were observed. The UK population has originated in the Western Route and, despite very recent colonization, no drastic loss of diversity was observed. The results show that the invasion of the killer shrimp is not associated with the costs of loosing genetic diversity, which may contribute to the success of this invader in the newly colonized areas. Additionally, while it has not yet occurred, it might be expected that future interbreeding between the genetically diversified populations from two independent invasion routes will potentially even enhance this success.
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Affiliation(s)
- Tomasz Rewicz
- University of Lodz, Department of Invertebrate Zoology and Hydrobiology, Łódź, Poland
- * E-mail:
| | - Remi Wattier
- Université de Bourgogne, Equipe Ecologie Evolutive, UMR CNRS 6282 Biogéosciences, Dijon, France
| | - Michał Grabowski
- University of Lodz, Department of Invertebrate Zoology and Hydrobiology, Łódź, Poland
| | - Thierry Rigaud
- Université de Bourgogne, Equipe Ecologie Evolutive, UMR CNRS 6282 Biogéosciences, Dijon, France
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Sieracki JL, Bossenbroek JM, Chadderton WL. A spatial modeling approach to predicting the secondary spread of invasive species due to ballast water discharge. PLoS One 2014; 9:e114217. [PMID: 25470822 PMCID: PMC4254998 DOI: 10.1371/journal.pone.0114217] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/19/2014] [Accepted: 11/05/2014] [Indexed: 11/28/2022] Open
Abstract
Ballast water in ships is an important contributor to the secondary spread of invasive species in the Laurentian Great Lakes. Here, we use a model previously created to determine the role ballast water management has played in the secondary spread of viral hemorrhagic septicemia virus (VHSV) to identify the future spread of one current and two potential invasive species in the Great Lakes, the Eurasian Ruffe (Gymnocephalus cernuus), killer shrimp (Dikerogammarus villosus), and golden mussel (Limnoperna fortunei), respectively. Model predictions for Eurasian Ruffe have been used to direct surveillance efforts within the Great Lakes and DNA evidence of ruffe presence was recently reported from one of three high risk port localities identified by our model. Predictions made for killer shrimp and golden mussel suggest that these two species have the potential to become rapidly widespread if introduced to the Great Lakes, reinforcing the need for proactive ballast water management. The model used here is flexible enough to be applied to any species capable of being spread by ballast water in marine or freshwater ecosystems.
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Affiliation(s)
- Jennifer L. Sieracki
- Lake Erie Center, Department of Environmental Sciences, University of Toledo, Oregon, Ohio, United States of America
- * E-mail:
| | - Jonathan M. Bossenbroek
- Lake Erie Center, Department of Environmental Sciences, University of Toledo, Oregon, Ohio, United States of America
| | - W. Lindsay Chadderton
- Great Lakes Project, The Nature Conservancy, c/o Environmental Change Initiative, University of Notre Dame, South Bend, Indiana, United States of America
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AGUIRRE-PABÓN J, OROZCO BERDUGO GJ, NARVÁEZ BARANDICA J. GENETIC STATUS, SOURCE AND ESTABLISHMENT RISK OF THE GIANT TIGER SHRIMP (PENAEIDAE: Penaeus monodon), AN INVASIVE SPECIES IN COLOMBIAN CARIBBEAN WATERS. ACTA BIOLÓGICA COLOMBIANA 2014. [DOI: 10.15446/abc.v20n1.41946] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022] Open
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36
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Sieracki JL, Bossenbroek JM, Faisal M. Modeling the secondary spread of viral hemorrhagic septicemia virus (VHSV) by commercial shipping in the Laurentian Great Lakes. Biol Invasions 2014. [DOI: 10.1007/s10530-013-0556-2] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
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37
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Slynko YV, Stolbunova VV, Chebotar SV, Zamorov VV, Gurovskiy AN. Haplotype diversity in the mtDNA cyt b gene in round goby (Neogobius melanostomus (Pallas)) from the northwestern part of the Black Sea basin. RUSS J GENET+ 2014. [DOI: 10.1134/s1022795414030090] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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38
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Díez-del-Molino D, Carmona-Catot G, Araguas RM, Vidal O, Sanz N, García-Berthou E, García-Marín JL. Gene flow and maintenance of genetic diversity in invasive mosquitofish (Gambusia holbrooki). PLoS One 2013; 8:e82501. [PMID: 24358194 PMCID: PMC3865026 DOI: 10.1371/journal.pone.0082501] [Citation(s) in RCA: 24] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2013] [Accepted: 10/25/2013] [Indexed: 11/19/2022] Open
Abstract
Genetic analyses contribute to studies of biological invasions by mapping the origin and dispersal patterns of invasive species occupying new territories. Using microsatellite loci, we assessed the genetic diversity and spatial population structure of mosquitofish (Gambusia holbrooki) that had invaded Spanish watersheds, along with the American locations close to the suspected potential source populations. Mosquitofish populations from the Spanish streams that were studied had similar levels of genetic diversity to the American samples; therefore, these populations did not appear to have undergone substantial losses of genetic diversity during the invasion process. Population structure analyses indicated that the Spanish populations fell into four main clusters, which were primarily associated with hydrography. Dispersal patterns indicated that local populations were highly connected upstream and downstream through active dispersal, with an average of 21.5% fish from other locations in each population. After initially introducing fish to one location in a given basin, such dispersal potential might contribute to the spread and colonization of suitable habitats throughout the entire river basin. The two-dimension isolation-by-distance pattern here obtained, indicated that the human-mediated translocation of mosquitofish among the three study basins is a regular occurrence. Overall, both phenomena, high natural dispersal and human translocation, favor gene flow among river basins and the retention of high genetic diversity, which might help retain the invasive potential of mosquitofish populations.
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Affiliation(s)
- David Díez-del-Molino
- Laboratori d’Ictiologia Genètica, Departament de Biologia, Universitat de Girona, Girona, Spain
| | - Gerard Carmona-Catot
- Institut d'Ecologia Aquàtica, Departament de Biologia, Universitat de Girona, Girona, Spain
| | - Rosa-Maria Araguas
- Laboratori d’Ictiologia Genètica, Departament de Biologia, Universitat de Girona, Girona, Spain
| | - Oriol Vidal
- Laboratori d’Ictiologia Genètica, Departament de Biologia, Universitat de Girona, Girona, Spain
| | - Nuria Sanz
- Laboratori d’Ictiologia Genètica, Departament de Biologia, Universitat de Girona, Girona, Spain
| | - Emili García-Berthou
- Institut d'Ecologia Aquàtica, Departament de Biologia, Universitat de Girona, Girona, Spain
| | - Jose-Luis García-Marín
- Laboratori d’Ictiologia Genètica, Departament de Biologia, Universitat de Girona, Girona, Spain
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Kinziger AP, Nakamoto RJ, Harvey BC. Local-scale invasion pathways and small founder numbers in introduced Sacramento pikeminnow (Ptychocheilus grandis). CONSERV GENET 2013. [DOI: 10.1007/s10592-013-0516-5] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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40
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Haponski AE, Stepien CA. Phylogenetic and biogeographical relationships of theSanderpikeperches (Percidae: Perciformes): patterns across North America and Eurasia. Biol J Linn Soc Lond 2013. [DOI: 10.1111/bij.12114] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Amanda E. Haponski
- The Great Lakes Genetics/Genomics Laboratory; Lake Erie Center and the Department of Environmental Sciences; The University of Toledo; 6200 Bayshore Road; Toledo; OH; 43616; USA
| | - Carol A. Stepien
- The Great Lakes Genetics/Genomics Laboratory; Lake Erie Center and the Department of Environmental Sciences; The University of Toledo; 6200 Bayshore Road; Toledo; OH; 43616; USA
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41
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Præbel K, Gjelland KØ, Salonen E, Amundsen PA. Invasion genetics of vendace (Coregonus albula (L.)) in the Inari-Pasvik watercourse: revealing the origin and expansion pattern of a rapid colonization event. Ecol Evol 2013; 3:1400-12. [PMID: 23762524 PMCID: PMC3678492 DOI: 10.1002/ece3.552] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2012] [Revised: 03/01/2013] [Accepted: 03/09/2013] [Indexed: 01/12/2023] Open
Abstract
Species invasions can have wide-ranging biological and socio-economic effects and are generally unwanted by legislation. Identification of the source population as well as the ecology and genetics of both the invader population and the receiving community is of crucial importance. The rapid invasion of a small coregonid fish vendace (Coregonus albula) in a major northern European subarctic watercourse has resulted in a labile ecological situation in the receiving community. The ecological impact of the invasion has been thoroughly documented, but the genetics of the invasion remains to be explored. We analyzed the genetic diversity and divergence patterns among the two possible source populations from southern Finnish Lapland and three colonists populations within the Inari-Pasvik watercourse using ten microsatellite loci in order to (i) identify the most likely source of the invasion, (ii) reveal the dispersal pattern and genetic structure of the secondary expansion, and (iii) to investigate whether the initial introduction and the secondary expansion were associated with founder effects. We revealed that repeated translocation of vendace from Lake Sinettäjärvi into a tributary lake of L. Inari in 1964–1966 is the most plausible source for the invasion. Both the initial introduction and the secondary expansion were found not to be associated with significant founder effects. The secondary expansion followed a stepping stone pattern and the source and colonist populations of this expansion have undergone rapid genetic divergence within a period of 15–35 years (ca. 8–17 generations). The rapid divergence may be contributed to lack of gene flow among the source and colonist populations due to the extensive hydroelectric damming in the watercourse. Multiple introductions and substantial genetic variation in combination with the boom-and-bust population development of the species thus likely counteracted the founder effects as well as fueled the rapid establishment and expansion of this species within the Inari-Pasvik watercourse.
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Affiliation(s)
- Kim Præbel
- Department of Arctic and Marine Biology, Faculty of Biosciences, Fisheries and Economics, University of Tromsø N-9037, Tromsø, Norway
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Wollschlager J, Folino-Rorem N, Daly M. Nematocysts of the invasive hydroid Cordylophora caspia (Cnidaria: Hydrozoa). THE BIOLOGICAL BULLETIN 2013; 224:99-109. [PMID: 23677975 DOI: 10.1086/bblv224n2p99] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
Abstract
Although there is significant genetic diversity among populations of the hydroid Cordylophora caspia, the species has not been split into multiple species or subspecies, in part because its members also show great physiological and morphological plasticity. This plasticity makes new taxonomic units hard to define or identify and obscures the connection between historically used names and the genetically defined clades. We explore variation in nematocysts, a character system not previously assessed in Cordylophora but which has demonstrated phylogenetic signal in other cnidarian taxa. We measured more than 5000 capsules from 112 individuals belonging to 14 populations, including representatives of the major genetic lineages. We found no correlation between the size range of capsules and either clade or salinity. Thus, for C. caspia, nematocysts are neither phenotypically plastic with respect to salinity nor taxonomically informative. Nematocyst size and density in particular tissues may be correlated to other environmental factors (such as prey type, size, and abundance in the location of each population) and may aid in distinguishing more distantly related species.
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Affiliation(s)
- Jennifer Wollschlager
- Department of Evolution, Ecology, and Organismal Biology, the Ohio State University, Columbus, OH 43210, USA.
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43
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Osborne MJ, Diver TA, Turner TF. Introduced populations as genetic reservoirs for imperiled species: a case study of the Arkansas River Shiner (Notropis girardi). CONSERV GENET 2013. [DOI: 10.1007/s10592-013-0457-z] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
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Sepulveda-Villet OJ, Stepien CA. Waterscape genetics of the yellow perch (Perca flavescens): patterns across large connected ecosystems and isolated relict populations. Mol Ecol 2012; 21:5795-826. [DOI: 10.1111/mec.12044] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2011] [Revised: 08/06/2012] [Accepted: 08/15/2012] [Indexed: 11/26/2022]
Affiliation(s)
- Osvaldo J. Sepulveda-Villet
- Great Lakes Genetics Laboratory, Lake Erie Center and Department of Environmental Sciences; The University of Toledo; 6200 Bayshore Road; Toledo; OH; 43616; USA
| | - Carol A. Stepien
- Great Lakes Genetics Laboratory, Lake Erie Center and Department of Environmental Sciences; The University of Toledo; 6200 Bayshore Road; Toledo; OH; 43616; USA
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Kinziger AP, Nakamoto RJ, Anderson EC, Harvey BC. Small founding number and low genetic diversity in an introduced species exhibiting limited invasion success (speckled dace, Rhinichthys osculus). Ecol Evol 2012; 1:73-84. [PMID: 22393484 PMCID: PMC3287371 DOI: 10.1002/ece3.8] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/13/2011] [Revised: 06/10/2011] [Accepted: 06/14/2011] [Indexed: 11/09/2022] Open
Abstract
Molecular evaluations of successful invaders are common, however studies of introduced species that have had limited invasion success, or have died out completely, are rare. We studied an introduced population of speckled dace (Rhinichthys osculus) from northern California, USA that has rapidly increased in abundance but remained restricted to a 25-km stretch of river since its introduction in the mid-1980s. Field and laboratory analyses indicate that invasion success of speckled dace is constrained by the combined effects of multiple predators. The role of bottleneck effects associated with the introduction has not been studied. We assayed variation in seven microsatellite loci and one mitochondrial DNA gene in the introduced population and nine putative source populations to identify the source population and evaluate bottleneck effects. The Trinity River system was supported as the source owing to its genetic similarity and geographic proximity to the introduced population. Consistent with a bottleneck, the introduced population exhibited reduced allelic and haplotype richness in comparison to source populations. Estimates of the genetically effective number of individuals founding the introduced population using nuclear coalescent analyses and a mitochondrial simulation procedure were highly concordant in suggesting that the initial colonizing group was comprised of about 10 individuals. A bottleneck effect in an exotic species exhibiting limited invasion success has rarely been documented and thus introduction of speckled dace represents an important model system for future investigation. Establishing a relationship between genetic diversity and factors limiting invasion success in this system (e.g., predator avoidance) will help determine the extent to which genetic diversity loss has constrained invasion success in speckled dace.
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Population genetics of introduced and native populations of the green mussel, Perna viridis: determining patterns of introduction. Biol Invasions 2012. [DOI: 10.1007/s10530-012-0301-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
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47
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Long-term population genetic structure of an invasive urochordate: the ascidian Botryllus schlosseri. Biol Invasions 2012. [DOI: 10.1007/s10530-012-0281-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/28/2022]
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Ram JL, Karim AS, Banno F, Kashian DR. Invading the invaders: reproductive and other mechanisms mediating the displacement of zebra mussels by quagga mussels. INVERTEBR REPROD DEV 2012. [DOI: 10.1080/07924259.2011.588015] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
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Kornis MS, Mercado-Silva N, Vander Zanden MJ. Twenty years of invasion: a review of round goby Neogobius melanostomus biology, spread and ecological implications. JOURNAL OF FISH BIOLOGY 2012; 80:235-85. [PMID: 22268429 DOI: 10.1111/j.1095-8649.2011.03157.x] [Citation(s) in RCA: 144] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
Abstract
The round goby Neogobius melanostomus is one of the most wide-ranging invasive fish on earth, with substantial introduced populations within the Laurentian Great Lakes watershed, the Baltic Sea and several major European rivers. Rapid expansion and deleterious ecosystem effects have motivated extensive research on this species; here this research is synthesized. Maps of the global distribution are provided and the invasion history of N. melanostomus, which spread more rapidly at first in North America, but has undergone substantial expansion over the past decade in the Baltic Sea, is summarized. Meta-analyses comparing their size at age, diet, competitors and predators in North American and European ecosystems are provided. Size at age is region specific, with saline habitats typically supporting larger and faster growing individuals than fresh water. Neogobius melanostomus prey differs substantially between regions, demonstrating a capacity to adapt to locally abundant food sources. Neogobius melanostomus comprise at least 50% of the diet of eight taxa in at least one site or life stage; in total, 16 predator taxa are documented from the Laurentian Great Lakes v. five from Eurasia. Invasive N. melanostomus are the only common forage fish to heavily exploit mussels in the Laurentian Great Lakes and the Baltic Sea, facilitating the transfer of energy from mussels to higher trophic levels in both systems. Neogobius melanostomus morphology, life history, reproduction, habitat preferences, environmental tolerances, parasites, environmental effects, sampling strategies and management are also discussed. Neogobius melanostomus inhabit a wide range of temperate freshwater and brackish-water ecosystems and will probably continue to spread via ballast water, accidental bait release and natural dispersal worldwide. Climate change will probably enhance N. melanostomus expansion by elevating water temperatures closer to its energetic optimum of 26° C. Future research needs are presented; most pressing are evaluating the economic effects of N. melanostomus invasion, determining long-term population level effects of egg predation on game-fish recruitment and comparing several variables (density, ecological effects morphology and life history) among invaded ecosystems. This review provides a central reference as researchers continue studying N. melanostomus, often as examples for advancing basic ecology and invasion biology.
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Affiliation(s)
- M S Kornis
- Center for Limnology, University of Wisconsin, Madison, WI 53706, USA.
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Kirk H, Paul J, Straka J, Freeland JR. Long-distance dispersal and high genetic diversity are implicated in the invasive spread of the common reed, Phragmites australis (Poaceae), in northeastern North America. AMERICAN JOURNAL OF BOTANY 2011; 98:1180-1190. [PMID: 21712417 DOI: 10.3732/ajb.1000278] [Citation(s) in RCA: 36] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
Abstract
PREMISE OF THE STUDY The Eurasian subspecies of the common reed (Phragmites australis subsp. australis, hereafter abbreviated as P. a. australis) was introduced to North America in the late 18(th) century and rapidly expanded its range, posing an ecological threat to wetlands. In this study, we aimed to determine whether admixture among multiple lineages, dispersal mechanisms, and high genetic diversity have contributed to the invasion of P. a. australis in the northeastern part of its range. Understanding mechanisms of the P. a. australis invasion will 1) contribute to a broader understanding of the factors that facilitate plant invasion, and 2) help us to develop effective management strategies for wetlands threatened by P. a. australis invasion. METHODS We used a population genetics approach incorporating nine microsatellite loci to study genetic diversity and population structure in relation to biogeography of introduced North American Phragmites a. australis stands in the northeastern continental region. KEY RESULTS Phragmites a. australis is genetically diverse in the region studied here. Significant population structure exists, and population structure is likely influenced by both long-distance dispersal via major waterways, and short-distance dispersal overland. Different lineages sometimes colonize geographically proximate locations leading to opportunities for admixture. Clonal reproduction likely exaggerates geographical structure among some stands, although high genetic and clonal diversity within some stands implies that sexual reproduction occurs frequently in P. a. australis. CONCLUSIONS A variety of factors, including admixture among multiple lineages, multiple modes of dispersal, and plasticity in reproductive strategy promote the invasion success of Phragmites a. australis. Wetland managers in the St. Lawrence River/Great Lakes region should focus monitoring efforts on the shores of conservation lands to prevent the establishment of propagules from novel lineages.
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Affiliation(s)
- Heather Kirk
- Department of Biology, Trent University, Peterborough, Ontario, Canada K9J 7B8.
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