Lead, cadmium and nickel removal efficiency of white-rot fungus Phlebia brevispora

A holistic perspective on the efficiency of microbial enzymes in bioremediation process: Mechanism and challenges: A review

Industrial activities, pharmaceutical contaminants, excessive agricultural inputs, and improper waste disposal have contributed to the widespread pollution of soil and water. Traditional remediation techniques, while effective, often generate secondary waste and are economically unfeasible. In contrast, microbial bioremediation offers a sustainable and cost-effective alternative by utilizing microorganisms and their enzymatic systems to degrade and detoxify pollutants. This review investigates the potential of microbial enzymes in remediation strategies for removing heavy metals and pharmaceutical contaminants from polluted environments. It analyzes the fundamental mechanisms by which microorganisms sequester and degrade these pollutants, emphasizing the enzymatic processes that facilitate their breakdown. Furthermore, it explores key microbial factors influencing bioremediation efficiency, including microbial diversity and environmental conditions. Additionally, it examines the challenges associated with scaling these bioremediation strategies for global environmental applications and provides insights for future research and implementation.

Revisiting biochemical pathways for lead and cadmium tolerance by domain bacteria, eukarya, and their joint action in bioremediation

With the advent rise is in urbanization and industrialization, heavy metals (HMs) such as lead (Pb) and cadmium (Cd) contamination have increased considerably. It is among the most recalcitrant pollutants majorly affecting the biotic and abiotic components of the ecosystem like human well-being, animals, soil health, crop productivity, and diversity of prokaryotes (bacteria) and eukaryotes (plants, fungi, and algae). At higher concentrations, these metals are toxic for their growth and pose a significant environmental threat, necessitating innovative and sustainable remediation strategies. Bacteria exhibit diverse mechanisms to cope with HM exposure, including biosorption, chelation, and efflux mechanism, while fungi contribute through mycorrhizal associations and hyphal networks. Algae, especially microalgae, demonstrate effective biosorption and bioaccumulation capacities. Plants, as phytoremediators, hyperaccumulate metals, providing a nature-based approach for soil reclamation. Integration of these biological agents in combination presents opportunities for enhanced remediation efficiency. This comprehensive review aims to provide insights into joint action of prokaryotic and eukaryotic interactions in the management of HM stress in the environment.

The molecular insights of cyanobacterial bioremediations of heavy metals: the current and the future challenges

In recent years, overexplorations of ore and the growth of industries are the prime factors in the release of heavy metals in environments. As a result, the food crops and water bodies are contaminated with metals which may have several adverse effects on the health of humans and other living species. These metals and metalloids, such as Zn, Cu, Mn, Ni, Cr, Pb, Cd, and As, upset the biochemical pathways of metabolite synthesis in living organisms and contribute to the etiology of different diseases. Microorganisms include bacteria, archaea, viruses, and many unicellular eukaryotes, which can span three domains of life-Archaea, Bacteria, and Eukarya-and some microorganisms, such as cyanobacteria, have shown high efficiency in the biosorption rate of heavy metals. Cyanobacteria are suitable for bioremediation as they can grow in adverse environments, have a less negative impact on the surrounding environment, and are relatively cheaper to manage. The structure of cyanobacteria has shown no extensive internal-bound membranes, so it can directly employ the physiological mechanisms to uptake heavy metals from contamination sites. Such biochemical makeups are suitable for managing and bioremediating heavy metal concentrations in polluted environments. This review aims to explore the potential of cyanobacteria in the bioremediation of heavy metals and metalloids in water bodies. Additionally, we have identified the prospects for enhancing bioremediation effectiveness.

Role of white rot fungi in sustainable remediation of heavy metals from the contaminated environment

Heavy metal contamination has severe impacts on the natural environment. The currently existing physico-chemical methods have certain limitations, restricting their wide-scale application. The use of biological agents like bacteria, algae, and fungi can help eliminate heavy metals without adversely affecting flora and fauna. Due to their inherent ability to withstand adverse environmental conditions, nowadays, mycoremediation approaches are receiving considerable attention for heavy metal removal from contaminated sites. In this review, we emphasised the role of white rot fungi in remediation of heavy metal along with different factors influencing biosorption, effects on exposed fungi, and the mechanisms involved. Bibliometric analysis tools have been applied to literature search and trend analysis of the research on white rot fungi-mediated heavy metal removal. Annual growth rates and average citations per document are 5.08% and 35.48, respectively. Phanerochaete chrysosporium, Pleurotus ostreatus, and Trametes versicolor have been widely explored for the remediation of heavy metals. In addition to providing some prospects, the review also highlighted a few limitations, including inconsistent removal and effects of environmental factors influencing the functioning of white rot fungi. Overall, white rot fungi have been found to have immense potential to be widely utilised for sustainable remediation of heavy metal-contaminated environments.

Copper removal from aqueous solutions by white rot fungus Pleurotus ostreatus GEMB-PO1 and its potential in co-remediation of copper and organic pollutants

Addressing the environmental contamination from heavy metals and organic pollutants remains a critical challenge. This study explored the resilience and removal potential of Pleurotus ostreatus GEMB-PO1 for copper. P. ostreatus GEMB-PO1 showed significant tolerance, withstanding copper concentrations up to 2 mM. Its copper removal efficiency ranged from 64.56 % at 0.5 mM to 22.90 % at 8 mM. Transcriptomic insights into its response to copper revealed a marked upregulation in xenobiotic degradation-related enzymes, such as laccase and type II peroxidases. Building on these findings, a co-remediation system using P. ostreatus GEMB-PO1 was developed to remove both copper and organic pollutants. While this approach significantly enhanced the degradation efficiency of organic contaminants, it concurrently exhibited a diminished efficacy in copper removal within the composite system. This study underscores the potential of P. ostreatus GEMB-PO1 in environmental remediation. Nevertheless, further investigation is required to optimize the simultaneous removal of organic pollutants and copper.

Fungal bioremediation approaches for the removal of toxic pollutants: Mechanistic understanding for biorefinery applications

Pollution is a global menace that poses harmful effects on all the living ecosystems and to the Earth. As years pass by, the available and the looming rate of pollutants increases at a faster rate. Although many treatments and processing strategies are waged for treating such pollutants, the by-products and the wastes or drain off generated by these treatments further engages in the emission of hazardous waste. Innovative and long-lasting solutions are required to address the urgent global issue of hazardous pollutant remediation from contaminated environments. Myco-remediation is a top-down green and eco-friendly tool for pollution management. It is a cost-effective and safer practice of converting pernicious substances into non-toxic forms by the use of fungi. But these pollutants can be transformed into useable products along with multiple benefits for the environment such as sequestration of carbon emissions and also to generate high valuable bioactive materials that fits as a sustainable economic model. The current study has examined the possible applications of fungi in biorefineries and their critical role in the transformation and detoxification of pollutants. The paper offers important insights into using fungal bioremediation for both economically and environmentally sound solutions in the domain of biorefinery applications by combining recent research findings.

Genome sequencing of Cladophialophora exuberans, a novel candidate for bioremediation of hydrocarbon and heavy metal polluted habitats

Cladophialophora exuberans is a filamentous fungus related to black yeasts in the order Chaetothyriales. These melanized fungi are known for their 'dual ecology', often occurring in toxic environments and also being frequently involved in human infection. Particularly Cladophialophora exuberans, C. immunda, C. psammophila, and Exophiala mesophila have been described with a pronounced ability to degrade aromatic compounds and xenobiotic volatiles, such as benzene, toluene, ethyl-benzene, and xylene, and are candidates for bioremediation applications. The objective of the present study is the sequencing, assembly, and description of the whole genome of C. exuberans focusing on genes and pathways related to carbon and toxin management, assessing the tolerance and bioremediation of lead and copper, and verifying the presence of genes for metal homeostasis. Genomic evaluations were carried out through a comparison with sibling species including clinical and environmental strains. Tolerance of metals was evaluated via a microdilution method establishing minimum inhibitory (MIC) and fungicidal concentrations (MFC), and agar diffusion assays. Heavy metal bioremediation was evaluated via graphite furnace atomic absorption spectroscopy (GFAAS). The final assembly of C. exuberans comprised 661 contigs, with genome size of 38.10 Mb, coverage of 89.9X and a GC content of 50.8%. In addition, inhibition of growth was shown at concentrations of 1250 ppm for copper and at 625 ppm for lead, using the MIC method. In the agar tests, the strain grew at 2500 ppm of copper and lead. In GFAAS tests, uptake capacities were observed of 89.2% and 95.7% for copper and lead, respectively, after 21 experimental days. This study enabled the annotation of genes involved in heavy metal homeostasis and also contributed to a better understanding of the mechanisms used in tolerance of and adaptation to extreme conditions.

An Approach to Evaluate Pb Tolerance and Its Removal Mechanisms by Pleurotus opuntiae

Widespread lead (Pb) contamination prompts various environmental problems and accounts for about 1% of the global disease burden. Thus, it has necessitated the demand for eco-friendly clean-up approaches. Fungi provide a novel and highly promising approach for the remediation of Pb-containing wastewater. The current study examined the mycoremediation capability of a white rot fungus, P. opuntiae, that showed effective tolerance to increasing concentrations of Pb up to 200 mg L−1, evidenced by the Tolerance Index (TI) of 0.76. In an aqueous medium, the highest removal rate (99.08%) was recorded at 200 mg L−1 whereas intracellular bioaccumulation also contributed to the uptake of Pb in significant amounts with a maximum of 24.59 mg g−1. SEM was performed to characterize the mycelium, suggesting changes in the surface morphology after exposure to high Pb concentrations. LIBS indicated a gradual change in the intensity of some elements after exposure to Pb stress. FTIR spectra displayed many functional groups including amides, sulfhydryl, carboxyl, and hydroxyl groups on the cell walls that led to binding sites for Pb and indicated the involvement of these groups in biosorption. XRD analysis unveiled a mechanism of biotransformation by forming a mineral complex as PbS from Pb ion. Further, Pb fostered the level of proline and MDA at a maximum relative to the control, and their concentration reached 1.07 µmol g−1 and 8.77 nmol g−1, respectively. High Pb concentration results in oxidative damage by increasing the production of ROS. Therefore, the antioxidant enzyme system provides a central role in the elimination of active oxygen. The enzymes, namely SOD, POD, CAT, and GSH, served as most responsive to clear away ROS and lower the stress. The results of this study suggested that the presence of Pb caused no visible adverse symptoms in P. opuntiae. Moreover, biosorption and bioaccumulation are two essential approaches involved in Pb removal by P. opuntiae and are established as worthwhile agents for the remediation of Pb from the environment.

Biotransformation of chloramphenicol by white-rot-fungi Trametes versicolor under cadmium stress

The recalcitrant chloramphenicol (CAP) combined with heavy metals cadmium (Cd) commonly co-existed in the environment, posing threat to environment health. The capacity of Trametes versicolor to remove/biodegrade CAP in air-pulse fluidized-bed reactor was evaluated, even under Cd stress. T. versicolor could remove 44 % CAP of 5 mg/L in 15 days, even 51 % CAP under 1 mg/L Cd stress. Sustained Cd stress inhibited CAP biodegradation and Cd removal in a 5-batches of a 5-days cycle sequential batch reactor. Nine transformation products and two novel pathways were proposed, with initial multi-step transformation reaction into CP2 and allylic alcohol, respectively. Furthermore, the main mechanism of Cd removal by T. versicolor was extracellular surface bioadsorption and intracellular accumulation. This study filled the gap of the mechanism of simultaneous CAP removal/biodegradation and Cd removal by white-rot fungi T. versicolor, which offer a theoretical basis for future application of biological removal of CAP containing wastewater.

Mycosynthesis of Metal-Containing Nanoparticles-Fungal Metal Resistance and Mechanisms of Synthesis

In the 21st century, nanomaterials play an increasingly important role in our lives with applications in many sectors, including agriculture, biomedicine, and biosensors. Over the last two decades, extensive research has been conducted to find ways to synthesise nanoparticles (NPs) via mediation with fungi or fungal extracts. Mycosynthesis can potentially be an energy-efficient, highly adjustable, environmentally benign alternative to conventional physico-chemical procedures. This review investigates the role of metal toxicity in fungi on cell growth and biochemical levels, and how their strategies of resistance, i.e., metal chelation, biomineral formation, biosorption, bioaccumulation, compartmentalisation, and efflux of metals from cells, contribute to the synthesis of metal-containing NPs used in different applications, e.g., biomedical, antimicrobial, catalytic, biosensing, and precision agriculture. The role of different synthesis conditions, including that of fungal biomolecules serving as nucleation centres or templates for NP synthesis, reducing agents, or capping agents in the synthesis process, is also discussed. The authors believe that future studies need to focus on the mechanism of NP synthesis, as well as on the influence of such conditions as pH, temperature, biomass, the concentration of the precursors, and volume of the fungal extracts on the efficiency of the mycosynthesis of NPs.

A review of the application of fungi as an effective and attractive bio-adsorbent for biosorption of heavy metals from wastewater

One of the most hazardous environmental pollutants is the pollution risen by heavy metal ions in effluents, which is increasing due to the increasing human activity and the development of urbanization. Notwithstanding the economic challenges to control the pollution of effluent treatment processes, it seems necessary to provide effective approaches. The sorption method is widely used due to low-cost, flexibility in design and operation, repeatability, and significant performance. Hence, the need for more environmentally friendly sorbents to eliminate metal ions is greater than ever. Due to the unique features such as the presence of chitin and chitosan in the cell wall, high absorption capacity, environmental friendliness, availability, and cheapness, the use of fungi as adsorbent has received much attention. Therefore, this work tries to address the use of fungi as biosorbents to remove these metals, the dangers of heavy metals, and their sources. Moreover, equilibrium, kinetic, and thermodynamic behaviors of the heavy metal ion adsorption process in the literature are briefly studied.

White rot fungus mediated removal of mercury from wastewater

Heavy metal contamination creates numerous problems in environment and considered as big challenge for the society. Mercury (Hg) may exert several harmful effects on human heath including nervous system, digestive system, and immune system, along with damage in lungs and kidneys, which might be fatal. In this study, the removal of Hg from the wastewater by using a whiter rot fungus Phlebia floridensis was evaluated in a batch culture system for 7 days. The fungus was also evaluated for the tolerance level of Hg and the morphological changes were studied by SEM-EDX. The fungus could tolerate up to 100 μM of Hg concentration. Scanning electron microscopic images showed changes in the morphology and fine structures of the fungal hyphae. Atomic absorption spectroscopic analyses of the treated water sample revealed that the fungus could remove 70%-84% of Hg depending upon the initial concentration. The pH fluctuation was recorded from 5.8 to 6.8 during the experimental conditions at temperature 28°C ± 2°C. Thus, the study explores the use of this fungus for the application in metal containing wastewater treatment. PRACTITIONER POINTS: Hg contaminated water can be treated by using white rot fungus, Phlebia floridensis. The fungus may accumulate mercury inside as well as on the surface of fungal mycelial biomass. Change in hyphal morphology was observed in the presence of lower concentration of the metal.

Fungus–Fungus Association of Boletus griseus and Hypomyces chrysospermus and Cadmium Resistance Characteristics of Symbiotic Fungus Hypomyces chrysospermus

Fungi bioaccumulation of heavy metals is a promising approach to remediate polluted soil and water. Boletus griseus could accumulate high amounts of Cd, even in a natural habitat with low Cd contents. This study found a symbiotic association of B. griseus with a fungus. The symbiotic fungus was isolated and identified as Hypomyces chrysospermus. The isolated strain had a strong ability to tolerate Cd. The minimum inhibitory concentration of Cd of fungal growth was 200 mg·L−1. The Cd bioaccumulation capacity of the fungus reached 10.03 mg·g−1. The biomass production of the fungus was promoted by 20 mg·L−1 Cd. However, high concentrations of Cd suppressed fungal growth and significantly altered the morphology and fine texture of fungal hyphae and chlamydospores. The immobilization effects of the cell wall and acid compounds and antioxidant enzymes were employed by the fungus to alleviate the toxic effects of Cd. The results not only demonstrate a new insight into the Cd bioconcentration mechanisms of B. griseus but also provide a potential bioremediation fungus for Cd contamination.

Fungal-Metal Interactions: A Review of Toxicity and Homeostasis

Metal nanoparticles used as antifungals have increased the occurrence of fungal-metal interactions. However, there is a lack of knowledge about how these interactions cause genomic and physiological changes, which can produce fungal superbugs. Despite interest in these interactions, there is limited understanding of resistance mechanisms in most fungi studied until now. We highlight the current knowledge of fungal homeostasis of zinc, copper, iron, manganese, and silver to comprehensively examine associated mechanisms of resistance. Such mechanisms have been widely studied in Saccharomyces cerevisiae, but limited reports exist in filamentous fungi, though they are frequently the subject of nanoparticle biosynthesis and targets of antifungal metals. In most cases, microarray analyses uncovered resistance mechanisms as a response to metal exposure. In yeast, metal resistance is mainly due to the down-regulation of metal ion importers, utilization of metallothionein and metallothionein-like structures, and ion sequestration to the vacuole. In contrast, metal resistance in filamentous fungi heavily relies upon cellular ion export. However, there are instances of resistance that utilized vacuole sequestration, ion metallothionein, and chelator binding, deleting a metal ion importer, and ion storage in hyphal cell walls. In general, resistance to zinc, copper, iron, and manganese is extensively reported in yeast and partially known in filamentous fungi; and silver resistance lacks comprehensive understanding in both.