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He W, Ke X, Li T, Wu Y, Tang X, Chen W, Liu T, Du H. Comparison and improvement of RNA extraction methods in Sargassum (Phaeophyta). JOURNAL OF PHYCOLOGY 2023; 59:822-834. [PMID: 37656660 DOI: 10.1111/jpy.13375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2023] [Revised: 06/09/2023] [Accepted: 06/12/2023] [Indexed: 09/03/2023]
Abstract
Sargassum (Sargassaceae) is widely distributed globally and plays an important role in regulating climate change, but the landscape of genomes and transcripts is less known. High-quality nucleic acids are the basis for molecular biology experiments such as high-throughput sequencing. Although extensive studies have documented methods of RNA extraction, these methods are not very applicable to Sargassum, which contains high levels of polysaccharides and polyphenols. To find a suitable method to improve the quality of RNA extracted, we compared and modified several popular RNA extraction methods and screened one practical method with three specific Sargassum spp. The results showed that three CTAB methods (denoted as Methods 1, 2, and 3) and the RNAprep Pure Plant Kit (denoted as Method 4) could, with slight modifications, effectively isolate RNA from Sargassum species, except for Method 4 used with S. fusiforme. By performing further screening, we determined Method 4 was the best choice for S. hemiphyllum and S. henslowianum, as revealed by RNA yields, RNA Integrity Number (RIN), extraction time, and unigene mapped ratio. For S. fusiforme, Methods 1, 2, and 3 showed no obvious differences among the yields, quality, or time to perform. In addition, one other method was tested, but we found the quality of the RNA extracted by TRIzol reagent methods (denoted as Method 5) performed the worst when compared with the above four methods. Therefore, our study provides four suitable methods for RNA extraction in Sargassum and is essential for future genetic exploration of Sargassum.
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Affiliation(s)
- Weiling He
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou, China
| | - Xiao Ke
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou, China
| | - Tangcheng Li
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou, China
| | - Yuming Wu
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou, China
| | - Xianming Tang
- Hainan Provincial Key Laboratory of Tropical Maricultural Technology, Hainan Academy of Ocean and Fisheries Sciences, Haikou, China
| | - Weizhou Chen
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou, China
| | - Tao Liu
- State Key Laboratory of Marine Environmental Science & College of Ocean and Earth Sciences, Xiamen University, Xiamen, China
| | - Hong Du
- Guangdong Provincial Key Laboratory of Marine Disaster Prediction and Prevention, Shantou University, Shantou, China
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Graf L, Shin Y, Yang JH, Hwang IK, Yoon HS. Transcriptome analysis reveals the spatial and temporal differentiation of gene expression in the sporophyte of Undaria pinnatifida. ALGAL RES 2022. [DOI: 10.1016/j.algal.2022.102883] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
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Kumar A, Nonnis S, Castellano I, AbdElgawad H, Beemster GTS, Buia MC, Maffioli E, Tedeschi G, Palumbo A. Molecular response of Sargassum vulgare to acidification at volcanic CO 2 vents: Insights from proteomic and metabolite analyses. Mol Ecol 2022; 31:3844-3858. [PMID: 35635253 DOI: 10.1111/mec.16553] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2020] [Revised: 05/16/2022] [Accepted: 05/20/2022] [Indexed: 11/30/2022]
Abstract
Ocean acidification is impacting marine life all over the world. Understanding how species can cope with the changes in seawater carbonate chemistry represents a challenging issue. We addressed this topic using underwater CO2 vents that naturally acidify some marine areas off the island of Ischia. In the most acidified area of the vents, having a mean pH value of 6.7, comparable to far-future predicted acidification scenarios (by 2300), the biomass is dominated by the brown alga Sargassum vulgare. The novelty of the present study is the characterization of the S. vulgare proteome together with metabolite analyses to identify the key proteins, metabolites, and pathways affected by ocean acidification. A total of 367 and 387 proteins were identified in populations grown at pH that approximates the current global average (8.1) and acidified sites, respectively. Analysis of their relative abundance revealed that 304 proteins are present in samples from both sites: 111 proteins are either higher or exclusively present under acidified conditions, whereas 120 proteins are either lower or present only under control conditions. Functionally, under acidification, a decrease in proteins related to translation and post-translational processes and an increase of proteins involved in photosynthesis, glycolysis, oxidation-reduction processes, and protein folding were observed. In addition, small-molecule metabolism was affected, leading to a decrease of some fatty acids and antioxidant compounds under acidification. Overall, the results obtained by proteins and metabolites analyses, integrated with previous transcriptomic, physiological, and biochemical studies, allowed us to delineate the molecular strategies adopted by S. vulgare to grow in future acidified environments, including an increase of proteins involved in energetic metabolism, oxidation-reduction processes, and protein folding at the expense of proteins involved in translation and post-translational processes.
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Affiliation(s)
- Amit Kumar
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Marine Research Center, Naples, Italy
- Centre for Climate Change Studies, Sathyabama Institute of Science and Technology, Chennai, India
| | - Simona Nonnis
- Department of Veterinary Medicine and Animal Science (DIVAS), Università degli Studi di Milano, Milan, Italy
- CRC "Innovation for well-being and environment" (I-WE), Università degli Studi di Milano, Milan, Italy
| | - Immacolata Castellano
- Department of Molecular Medicine and Medical Biotechnology, University of Naples Federico II, Naples, Italy
- Stazione Zoologica Anton Dohrn, Department of Biology and Evolution of Marine Organisms, Naples, Italy
| | - Hamada AbdElgawad
- Department of Botany, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, University of Antwerp, Antwerp, Belgium
| | - Gerrit T S Beemster
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, University of Antwerp, Antwerp, Belgium
| | - Maria Cristina Buia
- Stazione Zoologica Anton Dohrn, Department of Integrative Marine Ecology, Marine Research Center, Naples, Italy
| | - Elisa Maffioli
- Department of Veterinary Medicine and Animal Science (DIVAS), Università degli Studi di Milano, Milan, Italy
| | - Gabriella Tedeschi
- Department of Veterinary Medicine and Animal Science (DIVAS), Università degli Studi di Milano, Milan, Italy
- CRC "Innovation for well-being and environment" (I-WE), Università degli Studi di Milano, Milan, Italy
| | - Anna Palumbo
- Stazione Zoologica Anton Dohrn, Department of Biology and Evolution of Marine Organisms, Naples, Italy
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Barakat KM, El-Sayed HS, Khairy HM, El-Sheikh MA, Al-Rashed SA, Arif IA, Elshobary ME. Effects of ocean acidification on the growth and biochemical composition of a green alga ( Ulva fasciata) and its associated microbiota. Saudi J Biol Sci 2021; 28:5106-5114. [PMID: 34466088 PMCID: PMC8381011 DOI: 10.1016/j.sjbs.2021.05.029] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Revised: 05/11/2021] [Accepted: 05/12/2021] [Indexed: 02/08/2023] Open
Abstract
In marine ecosystems, fluctuations in surface-seawater carbon dioxide (CO2), significantly influence the whole metabolism of marine algae, especially during the early stages of macroalgal development. In this study, the response of the green alga Ulva fasciata for elevating ocean acidification was investigated using four levels of pCO2 ~ 280, 550, 750 and 1050 µatm. Maximum growth rate (6.6% day-1), protein (32.43 %DW) and pigment (2.9 mg/g) accumulation were observed at pCO2-550 with an increase of ~2-fold compared to control. On the other hand, lipid and carbohydrate contents recorded their maximum production (4.23 and 46.96 %DW, respectively) at pCO2-750 while control showed 3.70 and 42.37 %DW, respectively. SDS-PAGE showed the presence of unique bands in response to pCO2, especially at 550 µatm. Dominant associated bacteria was shifted from Halomonas hydrothermalis of control to Vibrio toranzoniae at pCO2-1050. These findings suggest that ocean acidification at 550 µatm might impose noticeable effects on growth, protein, pigments, and protein profile of U. fasciata, which could be a good source for fish farming. While, pCO2-750 was recommended for energetic purpose, due to its high lipid and carbohydrate contents.
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Affiliation(s)
| | - Heba S. El-Sayed
- National Institute of Oceanography and Fisheries (NOIF), Cairo, Egypt
| | - Hanan M. Khairy
- National Institute of Oceanography and Fisheries (NOIF), Cairo, Egypt
- Corresponding authors at: National Institute of Oceanography and Fisheries, NIOF, 11516, Egypt (H.M. Khairy). Botany Department, Faculty of Science, Tanta University, 31527, Tanta, Egypt (M.E. Elshobary).
| | - Mohamed A. El-Sheikh
- Botany & Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Sarah A. Al-Rashed
- Botany & Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Ibrahim A. Arif
- Botany & Microbiology Department, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - Mostafa E. Elshobary
- Botany Department, Faculty of Science, Tanta University, 31527, Tanta, Egypt
- Corresponding authors at: National Institute of Oceanography and Fisheries, NIOF, 11516, Egypt (H.M. Khairy). Botany Department, Faculty of Science, Tanta University, 31527, Tanta, Egypt (M.E. Elshobary).
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Zhang X, Xu D, Han W, Wang Y, Fan X, Loladze I, Gao G, Zhang Y, Tong S, Ye N. Elevated CO 2 affects kelp nutrient quality: A case study of Saccharina japonica from CO 2 -enriched coastal mesocosm systems. JOURNAL OF PHYCOLOGY 2021; 57:379-391. [PMID: 33150587 DOI: 10.1111/jpy.13097] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/22/2020] [Revised: 10/03/2020] [Accepted: 10/23/2020] [Indexed: 06/11/2023]
Abstract
Kelps provide critical services for coastal food chains and ecosystem, and they are important food source for some segments of human population. Despite their ecological importance, little is known about long-term impacts of elevated CO2 (eCO2 ) on nutrient metabolites in kelps and the underlying regulation mechanisms. In this study, the kelp Saccharina japonica was cultured in CO2 -enriched coastal mesocosm systems for up to 3 months. We found that, although eCO2 significantly increased the growth rate, carbon concentrations, and C/N ratio of S. japonica, and it had no effect on total nitrogen and protein contents at the end of cultivation period. Meanwhile, it decreased the lipid, magnesium, sodium, and calcium content and changed the amino acid and fatty acid composition. Combining the genome-wide transcriptomic and metabolic evidence, we obtained a system-level understanding of metabolic response of S. japonica to eCO2 . The unique ornithine-urea cycle (OUC) and aspartate-argininosuccinate shunt (AAS), coupled with TCA cycle, balanced the carbon and nitrogen metabolism under eCO2 by providing carbon skeleton for amino acid synthesis and reduced power for nitrogen assimilation. This research provides a major advance in the understanding of kelp nutrient metabolic mechanism in the context of global climate change, and such CO2 -induced shifts in nutritional value may induce changes in the structure and stability of marine trophic webs and affect the quality of human nutrition resources.
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Affiliation(s)
- Xiaowen Zhang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266200, China
| | - Dong Xu
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266200, China
| | - Wentao Han
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Yitao Wang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Xiao Fan
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Irakli Loladze
- Bryan College of Health Sciences, Bryan Medical Center, Lincoln, NE, 68506, USA
| | - Guang Gao
- State Key Laboratory of Marine Environmental Science, Xiamen University, Xiamen, 361005, China
- Jiangsu Key Laboratory for Marine Bioresources and Environment, Huaihai Institute of Technology, Lianyungang, 222005, China
| | - Yan Zhang
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
| | - Shanying Tong
- School of Life Science, Ludong University, Yantai, 264025, China
| | - Naihao Ye
- Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao, 266071, China
- Function Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao, 266200, China
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Kumar A, Buia MC, Palumbo A, Mohany M, Wadaan MAM, Hozzein WN, Beemster GTS, AbdElgawad H. Ocean acidification affects biological activities of seaweeds: A case study of Sargassum vulgare from Ischia volcanic CO 2 vents. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2020; 259:113765. [PMID: 31884208 DOI: 10.1016/j.envpol.2019.113765] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Revised: 12/06/2019] [Accepted: 12/07/2019] [Indexed: 06/10/2023]
Abstract
We utilized volcanic CO2 vents at Castello Aragonese off Ischia Island as a natural laboratory to investigate the effect of lowered pH/elevated CO2 on the bioactivities of extracts from fleshy brown algae Sargassum vulgare C. Agardh. We analysed the carbohydrate levels, antioxidant capacity, antibacterial, antifungal, antiprotozoal, anticancer properties and antimutagenic potential of the algae growing at the acidified site (pH ∼ 6.7) and those of algae growing at the nearby control site Lacco Ameno (pH∼8.1). The results of the present study show that the levels of polysaccharides fucoidan and alginate were higher in the algal population at acidified site. In general, extracts for the algal population from the acidified site showed a higher antioxidant capacity, antilipidperoxidation, antibacterial, antifungal, antiprotozoal, anticancer activities and antimutagenic potential compared to the control population. The increased bioactivity in acidified population could be due to elevated levels of bioactive compounds of algae and/or associated microbial communities. In this snapshot study, we performed bioactivity assays but did not characterize the chemistry and source of presumptive bioactive compounds. Nevertheless, the observed improvement in the medicinal properties of S. vulgare in the acidified oceans provides a promising basis for future marine drug discovery.
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Affiliation(s)
- Amit Kumar
- Centre for Climate Change Studies, Sathyabama Institute of Science and Technology, Jeppiaar Nagar, Rajiv Gandhi Salai, Chennai, India; Sathyabama Marine Research Station, 123 Sallimalai Street, Rameswaram, India.
| | - Maria Cristina Buia
- Center of Villa Dohrn Ischia - Benthic Ecology, Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, P.ta S. Pietro, Ischia, Naples, Italy
| | - Anna Palumbo
- Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy
| | - Mohamed Mohany
- Department of Pharmacology and Toxicology, College of Pharmacy, King Saud University, Riyadh, 11451, Saudi Arabia
| | - Mohammed A M Wadaan
- Bioproducts Research Chair, Zoology Department, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia
| | - Wael N Hozzein
- Bioproducts Research Chair, Zoology Department, College of Science, King Saud University, P.O. Box 2455, Riyadh, 11451, Saudi Arabia; Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt
| | - Gerrit T S Beemster
- Integrated Molecular Plant Physiology Research Group (IMPRES) Department of Biology, Groenenborgerlaan 171, University of Antwerp, Antwerp, Belgium
| | - Hamada AbdElgawad
- Botany and Microbiology Department, Faculty of Science, Beni-Suef University, Beni-Suef, Egypt; Integrated Molecular Plant Physiology Research Group (IMPRES) Department of Biology, Groenenborgerlaan 171, University of Antwerp, Antwerp, Belgium
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7
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Gong S, Jin X, Xiao Y, Li Z. Ocean Acidification and Warming Lead to Increased Growth and Altered Chloroplast Morphology in the Thermo-Tolerant Alga Symbiochlorum hainanensis. FRONTIERS IN PLANT SCIENCE 2020; 11:585202. [PMID: 33281847 PMCID: PMC7705064 DOI: 10.3389/fpls.2020.585202] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Accepted: 10/21/2020] [Indexed: 05/03/2023]
Abstract
Ocean acidification and warming affect the growth and predominance of algae. However, the effects of ocean acidification and warming on the growth and gene transcription of thermo-tolerant algae are poorly understood. Here we determined the effects of elevated temperature (H) and acidification (A) on a recently discovered coral-associated thermo-tolerant alga Symbiochlorum hainanensis by culturing it under two temperature settings (26.0 and 32.0°C) crossed with two pH levels (8.16 and 7.81). The results showed that the growth of S. hainanensis was positively affected by H, A, and the combined treatment (AH). However, no superimposition effect of H and A on the growth of S. hainanensis was observed under AH. The analysis of chlorophyll fluorescence, pigment content, and subcellular morphology indicated that the chloroplast morphogenesis (enlargement) along with the increase of chlorophyll fluorescence and pigment content of S. hainanensis might be a universal mechanism for promoting the growth of S. hainanensis. Transcriptomic profiles revealed the effect of elevated temperature on the response of S. hainanensis to acidification involved in the down-regulation of photosynthesis- and carbohydrate metabolism-related genes but not the up-regulation of genes related to antioxidant and ubiquitination processes. Overall, this study firstly reports the growth, morphology, and molecular response of the thermo-tolerant alga S. hainanensis to future climate changes, suggesting the predominance of S. hainanensis in its associated corals and/or coral reefs in the future.
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Affiliation(s)
- Sanqiang Gong
- Marine Biotechnology Laboratory, State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
- Key Laboratory of Tropical Marine Bio-Resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China
| | - Xuejie Jin
- Key Laboratory of Tropical Marine Bio-Resources and Ecology, Guangdong Provincial Key Laboratory of Applied Marine Biology, South China Sea Institute of Oceanology, Chinese Academy of Sciences, Guangzhou, China
- Southern Marine Science and Engineering Guangdong Laboratory, Guangzhou, China
| | - Yilin Xiao
- Marine Biotechnology Laboratory, State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
| | - Zhiyong Li
- Marine Biotechnology Laboratory, State Key Laboratory of Microbial Metabolism and School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, China
- *Correspondence: Zhiyong Li,
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Transcriptional Analysis of Masson Pine ( Pinus massoniana) under High CO 2 Stress. Genes (Basel) 2019; 10:genes10100804. [PMID: 31614914 PMCID: PMC6826509 DOI: 10.3390/genes10100804] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2019] [Revised: 10/10/2019] [Accepted: 10/10/2019] [Indexed: 11/16/2022] Open
Abstract
To explore the molecular mechanism of the response of Masson pine (Pinus massoniana), the main coniferous tree in southern China, to high CO2 stress, transcriptome sequencing was carried out to analyze the genome-wide responses of annual seedlings under different durations (0 h, 6 h, 12 h and 24 h) of high CO2 stress. The results showed that a total of 3080/1908, 3110/2115 and 2684/1483 genes were up-/down-regulated after 6 h, 12 h and 24 h of treatment, respectively, compared with control check group (CK, 0 h). Kyoto Encyclopedia of Genes and Genomes (KEGG) analysis showed that most of these differentially expressed genes (DEGs) were enriched in energy metabolism, carbohydrate synthesis, cell wall precursor synthesis and hormone regulation pathways. For energy metabolism, the expression of most genes involved in photosynthesis (including the light reaction and Calvin cycle) was generally inhibited, while the expression of genes related glycolysis, the tricarboxylic acid (TCA) cycle and PPP pathway was up-regulated. In addition, the increase in the CO2 concentration induced the up-regulation of gene expression in the sucrose synthesis pathway. Among all starch synthesis genes, GBSS (granule-bound starch synthase) had the highest expression level. On the other hand, during the synthesis of hemicellulose and pectin (cell wall precursor substances), the expression levels of GMD (GDP-mannose 4,6-dehydratase), MGP (Mannose-1-phosphate guanylyl transferase) and RHM (Rhamnose biosynthetic enzyme) were the highest, suggesting that the synthesis of the raw materials hemicellulose and pectin in Masson pine under stress were mainly supplied by GDP-Man, GDP-Fuc and UDP-Rha. Finally, stress inhibited gene expression in the ABA (Abscisic Acid) synthesis pathway and induced gene expression in the GA (Gibberellin), SA (Salicylic acid), BR(Brassinolide) and MeJA (Methyl Jasmonate) pathways. Stomatal switches were regulated by hormonal interactions. This experiment elaborated on the response and molecular mechanism of Masson pine to CO2 stress and aided in screening carbon sequestration genes for the corresponding molecular research of Masson pine in the future.
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Kumar A, AbdElgawad H, Castellano I, Selim S, Beemster GTS, Asard H, Buia MC, Palumbo A. Effects of ocean acidification on the levels of primary and secondary metabolites in the brown macroalga Sargassum vulgare at different time scales. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 643:946-956. [PMID: 29960231 DOI: 10.1016/j.scitotenv.2018.06.176] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/06/2018] [Revised: 06/13/2018] [Accepted: 06/14/2018] [Indexed: 06/08/2023]
Abstract
Most of the studies regarding the impact of ocean acidification on macroalgae have been carried out for short-term periods, in controlled laboratory conditions, thus hampering the possibility to scale up the effects on long-term. In the present study, the volcanic CO2 vents off Ischia Island were used as a natural laboratory to investigate the metabolic response of the brown alga Sargassum vulgare to acidification at different time scales. For long-term effects, algal populations naturally growing at acidified and control sites were compared. For short-term responses, in situ reciprocal transplants from control to acidified site and vice-versa were performed. Changes in the levels of sugars, fatty acids (FAs), amino acids (AAs), antioxidants, and phenolic compounds were examined. Our main finding includes variable metabolic response of this alga at different time scales to natural acidification. The levels of sugars, FAs, and some secondary metabolites were lower in the natural population at the acidified site, whereas the majority of AAs were higher than those detected in thalli growing at control site. Moreover, in algae transplanted from control to acidified site, soluble sugars (glucose and mannose), majority of AAs, and FAs increased in comparison to control plants transplanted within the same site. The differences in the response of the macroalga suggest that the metabolic changes observed in transplants may be due to acclimation that supports algae to cope with acidification, thus leading to adaptation to lowered pH in long time scale.
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Affiliation(s)
- Amit Kumar
- Center of Villa Dohrn Ischia - Benthic Ecology, Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, P.ta S. Pietro, Ischia, Naples, Italy; Centre for Climate Change Studies, Sathyabama Institute of Science and Technology, Chennai, India
| | - Hamada AbdElgawad
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, Groenenborgerlaan 171, University of Antwerp, Antwerp, Belgium; Faculty of Science, Department of Botany, Beni-Suef University, Beni-Suef, Egypt
| | - Immacolata Castellano
- Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy
| | - Samy Selim
- Department of Clinical Laboratory Sciences, College of Applied Medical Sciences, Jouf University, Sakaka P.O. 2014, Saudi Arabia; Microbiology and Botany Department, Faculty of Science, Suez Canal University, Ismailia P.O. 41522, Egypt
| | - Gerrit T S Beemster
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, Groenenborgerlaan 171, University of Antwerp, Antwerp, Belgium
| | - Han Asard
- Integrated Molecular Plant Physiology Research Group (IMPRES), Department of Biology, Groenenborgerlaan 171, University of Antwerp, Antwerp, Belgium
| | - Maria Cristina Buia
- Center of Villa Dohrn Ischia - Benthic Ecology, Department of Integrative Marine Ecology, Stazione Zoologica Anton Dohrn, P.ta S. Pietro, Ischia, Naples, Italy.
| | - Anna Palumbo
- Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton Dohrn, Villa Comunale, Naples, Italy.
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González-Delgado S, Hernández JC. The Importance of Natural Acidified Systems in the Study of Ocean Acidification: What Have We Learned? ADVANCES IN MARINE BIOLOGY 2018; 80:57-99. [PMID: 30368306 DOI: 10.1016/bs.amb.2018.08.001] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
Human activity is generating an excess of atmospheric CO2, resulting in what we know as ocean acidification, which produces changes in marine ecosystems. Until recently, most of the research in this area had been done under small-scale, laboratory conditions, using few variables, few species and few life cycle stages. These limitations raise questions about the reproducibility of the environment and about the importance of indirect effects and synergies in the final results of these experiments. One way to address these experimental problems is by conducting studies in situ, in natural areas where expected future pH conditions already occur, such as CO2 vent systems. In the present work, we compile and discuss the latest research carried out in these natural laboratories, with the objective to summarize their advantages and disadvantages for research to improve these investigations so they can better help us understand how the oceans of the future will change.
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Affiliation(s)
- Sara González-Delgado
- Marine Community Ecology and Climate Change, Departamento de Biología Animal, Edafología y Geología, Facultad de Ciencias (Biología), Universidad de La Laguna, Tenerife, Canary Islands, Spain
| | - José Carlos Hernández
- Marine Community Ecology and Climate Change, Departamento de Biología Animal, Edafología y Geología, Facultad de Ciencias (Biología), Universidad de La Laguna, Tenerife, Canary Islands, Spain.
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11
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Ecoevolutionary Dynamics of Carbon Cycling in the Anthropocene. Trends Ecol Evol 2018; 33:213-225. [DOI: 10.1016/j.tree.2017.12.006] [Citation(s) in RCA: 30] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 12/06/2017] [Accepted: 12/13/2017] [Indexed: 11/17/2022]
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Molari M, Guilini K, Lott C, Weber M, de Beer D, Meyer S, Ramette A, Wegener G, Wenzhöfer F, Martin D, Cibic T, De Vittor C, Vanreusel A, Boetius A. CO 2 leakage alters biogeochemical and ecological functions of submarine sands. SCIENCE ADVANCES 2018; 4:eaao2040. [PMID: 29441359 PMCID: PMC5810613 DOI: 10.1126/sciadv.aao2040] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/29/2017] [Accepted: 01/05/2018] [Indexed: 06/08/2023]
Abstract
Subseabed CO2 storage is considered a future climate change mitigation technology. We investigated the ecological consequences of CO2 leakage for a marine benthic ecosystem. For the first time with a multidisciplinary integrated study, we tested hypotheses derived from a meta-analysis of previous experimental and in situ high-CO2 impact studies. For this, we compared ecological functions of naturally CO2-vented seafloor off the Mediterranean island Panarea (Tyrrhenian Sea, Italy) to those of nonvented sands, with a focus on biogeochemical processes and microbial and faunal community composition. High CO2 fluxes (up to 4 to 7 mol CO2 m-2 hour-1) dissolved all sedimentary carbonate, and comigration of silicate and iron led to local increases of microphytobenthos productivity (+450%) and standing stocks (+300%). Despite the higher food availability, faunal biomass (-80%) and trophic diversity were substantially lower compared to those at the reference site. Bacterial communities were also structurally and functionally affected, most notably in the composition of heterotrophs and microbial sulfate reduction rates (-90%). The observed ecological effects of CO2 leakage on submarine sands were reproduced with medium-term transplant experiments. This study assesses indicators of environmental impact by CO2 leakage and finds that community compositions and important ecological functions are permanently altered under high CO2.
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Affiliation(s)
- Massimiliano Molari
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
| | - Katja Guilini
- Marine Biology Research Group, Department of Biology, Ghent University, Ghent, Belgium
| | - Christian Lott
- HYDRA Institute for Marine Sciences, Elba Field Station, Via del Forno 80, 57034 Campo nell’Elba (LI), Italy
| | - Miriam Weber
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
- HYDRA Institute for Marine Sciences, Elba Field Station, Via del Forno 80, 57034 Campo nell’Elba (LI), Italy
| | - Dirk de Beer
- Microsensor Group, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
| | - Stefanie Meyer
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
| | - Alban Ramette
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
| | - Gunter Wegener
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
- MARUM, Center for Marine Environmental Sciences, University Bremen, 28359 Bremen, Germany
| | - Frank Wenzhöfer
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
- HGF-MPG Joint Research Group on Deep Sea Ecology and Technology, Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany
| | - Daniel Martin
- Centre d’Estudis Avançats de Blanes (CEAB), Consejo Superior de Investigaciones Científicas (CSIC), Blanes, Girona, Catalunya, Spain
| | - Tamara Cibic
- Sezione di Oceanografia, Istituto Nazionale di Oceanografia e di Geofisica Sperimentale–OGS, I-34151 Trieste, Italy
| | - Cinzia De Vittor
- Sezione di Oceanografia, Istituto Nazionale di Oceanografia e di Geofisica Sperimentale–OGS, I-34151 Trieste, Italy
| | - Ann Vanreusel
- Marine Biology Research Group, Department of Biology, Ghent University, Ghent, Belgium
| | - Antje Boetius
- HGF-MPG (Helmholtz Gemeinschaft Deutscher Forschungszenten–Max Planck Gesellschaft) Joint Research Group on Deep Sea Ecology and Technology, Max Planck Institute for Marine Microbiology, 28359 Bremen, Germany
- MARUM, Center for Marine Environmental Sciences, University Bremen, 28359 Bremen, Germany
- HGF-MPG Joint Research Group on Deep Sea Ecology and Technology, Alfred Wegener Institute for Polar and Marine Research, Bremerhaven, Germany
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Kumar A, AbdElgawad H, Castellano I, Lorenti M, Delledonne M, Beemster GTS, Asard H, Buia MC, Palumbo A. Physiological and Biochemical Analyses Shed Light on the Response of Sargassum vulgare to Ocean Acidification at Different Time Scales. FRONTIERS IN PLANT SCIENCE 2017; 8:570. [PMID: 28469628 PMCID: PMC5396147 DOI: 10.3389/fpls.2017.00570] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2016] [Accepted: 03/29/2017] [Indexed: 05/22/2023]
Abstract
Studies regarding macroalgal responses to ocean acidification (OA) are mostly limited to short-term experiments in controlled conditions, which hamper the possibility to scale up the observations to long-term effects in the natural environment. To gain a broader perspective, we utilized volcanic CO2 vents as a "natural laboratory" to study OA effects on Sargassum vulgare at different time scales. We measured photosynthetic rates, oxidative stress levels, antioxidant contents, antioxidant enzyme activities, and activities of oxidative metabolic enzymes in S. vulgare growing at a natural acidified site (pH 6.7) compared to samples from a site with current pH (pH 8.2), used as a control one. These variables were also tested in plants transplanted from the control to the acidified site and vice-versa. After short-term exposure, photosynthetic rates and energy metabolism were increased in S. vulgare together with oxidative damage. However, in natural populations under long-term conditions photosynthetic rates were similar, the activity of oxidative metabolic enzymes was maintained, and no sign of oxidative damages was observed. The differences in the response of the macroalga indicate that the natural population at the acidified site is adapted to live at the lowered pH. The results suggest that this macroalga can adopt biochemical and physiological strategies to grow in future acidified oceans.
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Affiliation(s)
- Amit Kumar
- Center of Villa Dohrn–Benthic Ecology, Department of Integrative Marine Ecology, Stazione Zoologica Anton DohrnNaples, Italy
| | - Hamada AbdElgawad
- Integrated Molecular Plant Physiology Research Group, Department of Biology, University of AntwerpAntwerp, Belgium
| | - Immacolata Castellano
- Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton DohrnNaples, Italy
| | - Maurizio Lorenti
- Center of Villa Dohrn–Benthic Ecology, Department of Integrative Marine Ecology, Stazione Zoologica Anton DohrnNaples, Italy
| | | | - Gerrit T. S. Beemster
- Integrated Molecular Plant Physiology Research Group, Department of Biology, University of AntwerpAntwerp, Belgium
| | - Han Asard
- Integrated Molecular Plant Physiology Research Group, Department of Biology, University of AntwerpAntwerp, Belgium
| | - Maria Cristina Buia
- Center of Villa Dohrn–Benthic Ecology, Department of Integrative Marine Ecology, Stazione Zoologica Anton DohrnNaples, Italy
| | - Anna Palumbo
- Department of Biology and Evolution of Marine Organisms, Stazione Zoologica Anton DohrnNaples, Italy
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