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Liang Y, Liu J, Jin J, Han Y, Wei Z. Effects of low-molecular-weight organic acids on the transformation and phosphate retention of iron (hydr)oxides. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024; 940:173667. [PMID: 38823699 DOI: 10.1016/j.scitotenv.2024.173667] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2024] [Revised: 05/21/2024] [Accepted: 05/29/2024] [Indexed: 06/03/2024]
Abstract
The retention and mobilization of phosphate in soils are closely associated with the adsorption of iron (hydr)oxides and root exudation of low-molecular-weight organic acids (LMWOAs). This study investigated the role of LMWOAs in phosphate mobilization under incubation and field conditions. LMWOAs-mediated iron (hydr)oxide transformation and phosphate adsorption experiments revealed that the presence of LMWOAs decreased the phosphate adsorption capacity of iron (hydr)oxides by up to ~74 % due to the competition effect, while LMWOAs-induced iron mineral transformation resulted in an approximately six-fold increase in phosphate retention by decreasing the crystallinity and increasing the surface reactivity. Root simulation in rhizobox experiments demonstrated that LMWOAs can alter the contents of different extractable phosphate species and iron components, leading to 10 % ~ 30 % decreases in available phosphate in the near root region of two tested soils. Field experiments showed that crop covering between mango tree rows promoted the exudation of LMWOAs from mango roots. In addition, crop covering increased the contents of total phosphate and available phosphate by 9.08 % ~ 61.20 % and 34.33 % ~ 147.33 % in the rhizosphere soils of mango trees, respectively. These findings bridge the microscale and field scale to understand the delicate LMWOAs-mediated balance between the retention and mobilization of phosphate on iron (hydr)oxide surface, thereby providing important implications for mitigating the low utilization efficiency of phosphate in iron-rich soils.
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Affiliation(s)
- Yu Liang
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
| | - Jing Liu
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China; State Environmental Protection Key Laboratory of Soil Health and Green Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Jiezi Jin
- State Environmental Protection Key Laboratory of Soil Health and Green Remediation, College of Resources and Environment, Huazhong Agricultural University, Wuhan 430070, China
| | - Yuling Han
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China
| | - Zhiyuan Wei
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou 571101, China.
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Wang X, Zhou Y, Chai X, Foster TM, Deng CH, Wu T, Zhang X, Han Z, Wang Y. miR164-MhNAC1 regulates apple root nitrogen uptake under low nitrogen stress. THE NEW PHYTOLOGIST 2024; 242:1218-1237. [PMID: 38481030 DOI: 10.1111/nph.19663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2023] [Accepted: 02/22/2024] [Indexed: 04/12/2024]
Abstract
Nitrogen is an essential nutrient for plant growth and serves as a signaling molecule to regulate gene expression inducing physiological, growth and developmental responses. An excess or deficiency of nitrogen may have adverse effects on plants. Studying nitrogen uptake will help us understand the molecular mechanisms of utilization for targeted molecular breeding. Here, we identified and functionally validated an NAC (NAM-ATAF1/2-CUC2) transcription factor based on the transcriptomes of two apple rootstocks with different nitrogen uptake efficiency. NAC1, a target gene of miR164, directly regulates the expression of the high-affinity nitrate transporter (MhNRT2.4) and citric acid transporter (MhMATE), affecting root nitrogen uptake. To examine the role of MhNAC1 in nitrogen uptake, we produced transgenic lines that overexpressed or silenced MhNAC1. Silencing MhNAC1 promoted nitrogen uptake and citric acid secretion in roots, and enhanced plant tolerance to low nitrogen conditions, while overexpression of MhNAC1 or silencing miR164 had the opposite effect. This study not only revealed the role of the miR164-MhNAC1 module in nitrogen uptake in apple rootstocks but also confirmed that citric acid secretion in roots affected nitrogen uptake, which provides a research basis for efficient nitrogen utilization and molecular breeding in apple.
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Affiliation(s)
- Xiaona Wang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Yan Zhou
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Xiaofen Chai
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Toshi M Foster
- The New Zealand Institute for Plant and Food Research Limited (Plant & Food Research), Motueka, 7198, New Zealand
| | - Cecilia H Deng
- The New Zealand Institute for Plant and Food Research Limited (Plant & Food Research), Auckland, 1025, New Zealand
| | - Ting Wu
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Xinzhong Zhang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Zhenhai Han
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
| | - Yi Wang
- College of Horticulture, China Agricultural University, Beijing, 100193, China
- Key Laboratory of Biology and Genetic Improvement of Horticultural (Nutrition and Physiology), The Ministry of Agriculture and Rural Affairs, Beijing, 100193, China
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Barra PJ, Duran P, Delgado M, Viscardi S, Claverol S, Larama G, Dumont M, Mora MDLL. Proteomic response to phosphorus deficiency and aluminum stress of three aluminum-tolerant phosphobacteria isolated from acidic soils. iScience 2023; 26:107910. [PMID: 37790272 PMCID: PMC10543181 DOI: 10.1016/j.isci.2023.107910] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2023] [Revised: 07/27/2023] [Accepted: 09/11/2023] [Indexed: 10/05/2023] Open
Abstract
Aluminum (Al)-tolerant phosphobacteria enhance plant growth in acidic soils by improving Al complexing and phosphorus (P) availability. However, the impact of Al stress and P deficiency on bacterial biochemistry and physiology remains unclear. We investigated the single and mutual effects of Al stress (10 mM) and P deficiency (0.05 mM) on the proteome of three aluminum-tolerant phosphobacteria: Enterobacter sp. 198, Enterobacter sp. RJAL6, and Klebsiella sp. RCJ4. Cultivated under varying conditions, P deficiency upregulated P metabolism proteins while Al exposure downregulated iron-sulfur and heme-containing proteins and upregulated iron acquisition proteins. This demonstrated that Al influence on iron homeostasis and bacterial central metabolism. This study offers crucial insights into bacterial behavior in acidic soils, benefiting the development of bioinoculants for crops facing Al toxicity and P deficiency. This investigation marks the first proteomic study on the interaction between high Al and P deficiency in acid soils-adapted bacteria.
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Affiliation(s)
- Patricio Javier Barra
- Center of Plant, Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
- Biocontrol Research Laboratory, Universidad de La Frontera, Temuco 4811230, Chile
| | - Paola Duran
- Center of Plant, Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
- Biocontrol Research Laboratory, Universidad de La Frontera, Temuco 4811230, Chile
- Facultad de Ciencias Agropecuarias y Medioambiente, Departamento de Producción Agropecuaria, Universidad de La Frontera, Temuco 4811230, Chile
| | - Mabel Delgado
- Center of Plant, Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
| | - Sharon Viscardi
- Escuela de la Salud, Campus San Francisco, Universidad Católica de Temuco, Temuco 4811230, Chile
| | - Stéphane Claverol
- Plateforme Protéome, Centre Génomique Fonctionnelle de Bordeaux, Université de Bordeaux, Bordeaux, France
| | - Giovanni Larama
- Center of Plant, Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
- Biocontrol Research Laboratory, Universidad de La Frontera, Temuco 4811230, Chile
| | - Marc Dumont
- School of Biological Sciences, University of Southampton, Southampton, UK
| | - María de la Luz Mora
- Center of Plant, Soil Interaction and Natural Resources Biotechnology, Scientific and Technological Bioresource Nucleus, Universidad de La Frontera, Temuco 4811230, Chile
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Zhang Y, Fernie AR. The Role of TCA Cycle Enzymes in Plants. Adv Biol (Weinh) 2023; 7:e2200238. [PMID: 37341441 DOI: 10.1002/adbi.202200238] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2022] [Revised: 04/29/2023] [Indexed: 06/22/2023]
Abstract
As one of the iconic pathways in plant metabolism, the tricarboxylic acid (TCA) cycle is commonly thought to not only be responsible for the oxidization of respiratory substrate to drive ATP synthesis but also provide carbon skeletons to anabolic processes and contribute to carbon-nitrogen interaction and biotic stress responses. The functions of the TCA cycle enzymes are characterized by a saturation transgenesis approach, whereby the constituent expression of proteins is knocked out or reduced in order to investigate their function in vivo. The alteration of TCA cycle enzyme expression results in changed plant growth and photosynthesis under controlled conditions. Moreover, improvements in plant performance and postharvest properties are reported by overexpression of either endogenous forms or heterologous genes of a number of the enzymes. Given the importance of the TCA cycle in plant metabolism regulation, here, the function of each enzyme and its roles in different tissues are discussed. This article additionally highlights the recent finding that the plant TCA cycle, like that of mammals and microbes, dynamically assembles functional substrate channels or metabolons and discusses the implications of this finding to the current understanding of the metabolic regulation of the plant TCA cycle.
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Affiliation(s)
- Youjun Zhang
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, Plovdiv, 4000, Bulgaria
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476, Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, Plovdiv, 4000, Bulgaria
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Upadhyay P, Gupta M, Sra SK, Sharda R, Sharma S, Sardana VK, Akhatar J, Kaur G. Genome wide association studies for acid phosphatase activity at varying phosphorous levels in Brassica juncea L. FRONTIERS IN PLANT SCIENCE 2022; 13:1056028. [PMID: 36605963 PMCID: PMC9808407 DOI: 10.3389/fpls.2022.1056028] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/28/2022] [Accepted: 11/29/2022] [Indexed: 06/17/2023]
Abstract
Acid phosphatases (Apases) are an important group of enzymes that hydrolyze soil and plant phosphoesters and anhydrides to release Pi (inorganic phosphate) for plant acquisition. Their activity is strongly correlated to the phosphorus use efficiency (PUE) of plants. Indian mustard (Brassica juncea L. Czern & Coss) is a major oilseed crop that also provides protein for the animal feed industry. It exhibits low PUE. Understanding the genetics of PUE and its component traits, especially Apase activity, will help to reduce Pi fertilizer application in the crop. In the present study, we evaluated 280 genotypes of the diversity fixed foundation set of Indian mustard for Apase activity in the root (RApase) and leaf (LApase) tissues at three- low (5µM), normal (250µM) and high (1mM) Pi levels in a hydroponic system. Substantial effects of genotype and Pi level were observed for Apase activity in both tissues of the evaluated lines. Low Pi stress induced higher mean RApase and LApase activities. However, mean LApase activity was relatively more than mean RApase at all three Pi levels. JM06016, IM70 and Kranti were identified as promising genotypes with higher LApase activity and increased R/S at low Pi. Genome-wide association study revealed 10 and 4 genomic regions associated with RApase and LApase, respectively. Annotation of genomic regions in the vicinity of peak associated SNPs allowed prediction of 15 candidates, including genes encoding different family members of the acid phosphatase such as PAP10 (purple acid phosphatase 10), PAP16, PNP (polynucleotide phosphorylase) and AT5G51260 (HAD superfamily gene, subfamily IIIB acid phosphatase) genes. Our studies provide an understanding of molecular mechanism of the Apase response of B. juncea at varying Pi levels. The identified SNPs and candidate genes will support marker-assisted breeding program for improving PUE in Indian mustard. This will redeem the crop with enhanced productivity under restricted Pi reserves and degrading agro-environments.
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Affiliation(s)
- Priyanka Upadhyay
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Mehak Gupta
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Simarjeet Kaur Sra
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Rakesh Sharda
- Department of Soil & Water Engineering, Punjab Agricultural University, Ludhiana, India
| | - Sanjula Sharma
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Virender K. Sardana
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Javed Akhatar
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
| | - Gurpreet Kaur
- Department of Plant Breeding and Genetics, Punjab Agricultural University, Ludhiana, India
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Dong J, Delhaize E, Hunt J, Armstrong R, Tang C. Elevated CO 2 improves phosphorus nutrition and growth of citrate-secreting wheat when grown under adequate phosphorus supply on an Al 3+ -toxic soil. JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 2022; 102:7397-7404. [PMID: 35789487 DOI: 10.1002/jsfa.12108] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2022] [Revised: 06/16/2022] [Accepted: 07/05/2022] [Indexed: 06/15/2023]
Abstract
BACKGROUND Understanding how climate change affects the phosphorus (P) nutrition of crops grown on acid soils is important in optimizing the management of P, and to secure future food production on these soils. This study assessed the impact of elevated CO2 (eCO2 ) on the P nutrition of wheat (Triticum aestivum) grown on Al3+ -toxic and P-deficient soils or in hydroponics. The aluminium-resistant near-isogenic wheat lines EGA-Burke (malate efflux only) and EGA-Burke TaMATE1B (malate and citrate efflux) were grown under ambient (400 μmol mol-1 ) and elevated CO2 (800 μmol mol-1 ) in growth chambers for 4-6 weeks. RESULTS Elevated CO2 enhanced shoot growth and total P uptake of both lines at P rates >250 mg kg-1 , which was associated with improved root biomass allocation and thus increased root growth, but these effects were not apparent at lower P rates. Elevated CO2 decreased specific P uptake (P uptake per unit root length) at P supply >250 mg kg-1 , but did not significantly affect external or internal P requirements. This effect on the specific P uptake was less for EGA-Burke TaMATE1B than for EGA-Burke, possibly due to the increased citrate efflux and decreased Al concentration in root tips of EGA-Burke TaMATE1B. Compared to EGA-Burke, citrate-exuding EGA-Burke TaMATE1B had greater shoot P concentration and greater specific P uptake. CONCLUSION Elevated CO2 improved root growth, and thus total P uptake and plant production of both lines when high P alleviated Al3+ toxicity and improved P nutrition in acid soils. The decreased P uptake efficiency under eCO2 was less for EGA-Burke TaMATE1B than EGA-Burke. © 2022 Society of Chemical Industry.
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Affiliation(s)
- Jinlong Dong
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Bundoora, Victoria, Australia
| | - Emmanuel Delhaize
- Research School of Biology, Australian National University, Canberra, Australian Capital Territory, Australia
| | - James Hunt
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Bundoora, Victoria, Australia
- School of Agriculture and Food, The University of Melbourne, Parkville, Victoria, Australia
| | - Roger Armstrong
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Bundoora, Victoria, Australia
- Agriculture Victoria, Horsham, Victoria, Australia
| | - Caixian Tang
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Bundoora, Victoria, Australia
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Hajiboland R, Panda CK, Lastochkina O, Gavassi MA, Habermann G, Pereira JF. Aluminum Toxicity in Plants: Present and Future. JOURNAL OF PLANT GROWTH REGULATION 2022. [DOI: 10.1007/s00344-022-10866-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 10/26/2022] [Indexed: 06/23/2023]
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de Souza Campos PM, Meier S, Morales A, Lavanderos L, Nahuelcura J, Ruiz A, López-García Á, Seguel A. New Insights into the Phosphorus Acquisition Capacity of Chilean Lowland Quinoa Roots Grown under Low Phosphorus Availability. PLANTS (BASEL, SWITZERLAND) 2022; 11:3043. [PMID: 36432771 PMCID: PMC9695380 DOI: 10.3390/plants11223043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/05/2022] [Revised: 10/19/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
Reducing phosphate fertilizer inputs while increasing food nutritional quality has been posited as a major challenge to decrease human undernourishment and ensure food security. In this context, quinoa has emerged as a promising crop due to its ability to tolerate different stress conditions and grow in marginal soils with low nutrient content, in addition to the exceptional nutritional quality of its grains. However, there is scarce information about the phosphorus acquisition capacity of quinoa roots. This work aimed to provide new insights into P acquisition and functional root traits, such as root biomass, rhizosphere pH, carboxylate exudation, and acid phosphatase activity of thirty quinoa genotypes grown under P limiting conditions (7 mg P kg-1). Significant genotypic variation was observed among genotypes, with average P accumulation ranging from 1.2 to 11.8 mg. The shoot biomass production varied more than 14 times among genotypes and was correlated with the P accumulation on shoots (r = 0.91). Despite showing high variability in root traits, only root biomass production highly correlated with P acquisition (r = 0.77), suggesting that root growth/morphology rather than the measured biochemical activity possesses a critical role in the P nutrition of quinoa.
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Affiliation(s)
- Pedro M. de Souza Campos
- Instituto de Investigaciones Agropecuarias, INIA Carillanca, km 10 camino Cajón-Vilcún s/n, Temuco P.O. Box 929, Chile
| | - Sebastián Meier
- Instituto de Investigaciones Agropecuarias, INIA Carillanca, km 10 camino Cajón-Vilcún s/n, Temuco P.O. Box 929, Chile
| | - Arturo Morales
- Instituto de Investigaciones Agropecuarias, INIA Carillanca, km 10 camino Cajón-Vilcún s/n, Temuco P.O. Box 929, Chile
| | - Laura Lavanderos
- Carrera de Agronomía, Facultad de Ciencias Agropecuarias y Medioambiente, Universidad de La Frontera, P.O. Box 54-D, Temuco 4811230, Chile
| | - Javiera Nahuelcura
- Departamento de Ciencias Químicas y Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, P.O. Box 54-D, Temuco 4811230, Chile
| | - Antonieta Ruiz
- Departamento de Ciencias Químicas y Recursos Naturales, Facultad de Ingeniería y Ciencias, Universidad de La Frontera, P.O. Box 54-D, Temuco 4811230, Chile
| | - Álvaro López-García
- Instituto Interuniversitario de Investigación del Sistema Tierra en Andalucía (IISTA), Universidad de Jaén, Campus Las Lagunillas, 23071 Jaén, Spain
| | - Alex Seguel
- Departamento de Ciencias Agronómicas y Recursos Naturales, Facultad de Ciencias Agropecuarias y Medioambiente, Universidad de La Frontera, P.O. Box 54-D, Temuco 4811230, Chile
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Li Z, Zhao X, Gu X. Thermodynamic and kinetic modeling the interaction of goethite-ligand-metal ternary system. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2022; 307:119462. [PMID: 35588960 DOI: 10.1016/j.envpol.2022.119462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/22/2021] [Revised: 04/26/2022] [Accepted: 05/09/2022] [Indexed: 06/15/2023]
Abstract
Low-molecular-weight organic acids may significantly influence the mobility of metal in environment, but the kinetics are not fully understood and have not been quantified. In this study, the thermodynamic and kinetic effects of citric acid (CA) on the adsorption of Cd(II) and Ni(II) on goethite were investigated using batch-adsorption and stirred-flow experiments. A charge distribution and multisite complexation model (CD-MUSIC) and a thermodynamically based multi-rate kinetic model were employed to describe the adsorption behaviors. Two ternary surface complexes, (≡FeO)2CitMe and (≡FeOH)2MeCit2-, were involved in the adsorption. In addition, CA differed in its effects on Cd(II) and Ni(II) adsorption, enhancing Cd(II) adsorption but inhibiting Ni(II) adsorption at high levels. Kinetically, in the presence of CA, the adsorption of Cd(II) was faster than that of Ni(II). Increasing CA concentration led to faster Cd(II) adsorption, but resulted in the dissolution of the adsorbed Ni(II), possibly due to the much higher complexation constants of Ni-CA than of Cd-CA in aqueous phase. This finding implied that, in the rhizosphere, high level of CA may lead to more dissolution of Ni(II) than Cd(II); while in acidic ferrosol, CA may alleviate Cd(II) mobility and toxicity. The proposed mechanistic model sheds light on ion partition in the soil environment and may improve predictions thereof.
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Affiliation(s)
- Zipeng Li
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Xianlin Ave. 163, Nanjing, 210023, PR China.
| | - Xiaopeng Zhao
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Xianlin Ave. 163, Nanjing, 210023, PR China.
| | - Xueyuan Gu
- State Key Laboratory of Pollution Control and Resource Reuse, School of the Environment, Nanjing University, Xianlin Ave. 163, Nanjing, 210023, PR China.
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Staudinger C, Dissanayake BM, Duncan O, Millar AH. The wheat secreted root proteome: Implications for phosphorus mobilisation and biotic interactions. J Proteomics 2022; 252:104450. [PMID: 34890868 DOI: 10.1016/j.jprot.2021.104450] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 11/21/2021] [Accepted: 11/24/2021] [Indexed: 12/13/2022]
Abstract
Root secreted acid phosphatases and organic anions are widely perceived as major players of plant phosphorus (P) mobilisation from the rhizosphere under P limiting growth conditions. Previous research indicated that other mechanisms play a role, especially in species with fine roots, such as wheat. In this study we characterised the plant-derived extracellular proteome of wheat roots by profiling root tip mucilage, soluble root secreted and root tip proteomes. Extracellular acid phosphatases and enzymes of the central carbon metabolism were targeted using selected reaction monitoring. More than 140 proteins with extracellular localisation prediction were identified in mucilage. P starvation induced proteins predicted to be localised to the apoplast which are related to cell wall modification and defence in both, root tip and soluble root-secreted proteomes. Glycolytic enzymes were strongly increased in abundance by P limitation in root tips, as were PEPC and plastidial MDH. Soluble acid phosphatases were not identified in extracellular protein samples. Our results indicate that root tip mucilage contains proteins with the functional potential to actively shape their immediate environment by modification of plant structural components and biotic interactions. Wheat acid phosphatases appear to play a minor role in P mobilisation beyond the immediate root surface. SIGNIFICANCE: Phosphorus (P) is a plant growth limiting nutrient in many agricultural situations and the development of phosphorus efficient crops is of paramount importance for future agricultural management practices. As P is relatively immobile in soils, processes occurring at the root-soil interface, the rhizosphere, are suspected to play a key role in plant-induced P mobilisation. According to the current view, the secretion of extracellular acid phosphatases and organic anions enhances P mobilisation within several millimetres beyond the root surface, either directly or indirectly through the selection and appropriate soil microbes. However, the mechanisms of P mobilisation in species with fine roots, such as wheat, and the role of other secreted root proteins are poorly understood. Here, we carried out the profiling of wheat root tip mucilage, soluble root secreted and root tip proteomes. We analysed proteome changes in response to P starvation. We found that proteins with a predicted localisation to the apoplast made up a major proportion of stress-responsive proteins. Acid phosphatases were not identified within extracellular protein samples, which were enriched in proteins with predicted extracellular localisation. The absence of extracellular APases was further validated by multiple reaction monitoring. Our data indicates that wheat acid phosphatases play a minor role in P mobilisation beyond the immediate root surface and provides a resource for breeding strategies and further investigations of the functional roles of root tip-released proteins in the rhizosphere under P limitation.
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Affiliation(s)
- Christiana Staudinger
- School of Biological Sciences, The University of Western Australia, Australia; The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia; University of Natural Resources and Life Sciences, BOKU-Vienna, Department of Forest and Soil Sciences, Rhizosphere Ecology and Biogeochemistry Group, Austria.
| | - Bhagya M Dissanayake
- The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
| | - Owen Duncan
- The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
| | - A Harvey Millar
- The ARC Centre of Excellence in Plant Energy Biology, 35 Stirling Highway, Crawley, Perth 6009, Australia
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11
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Chai YN, Schachtman DP. Root exudates impact plant performance under abiotic stress. TRENDS IN PLANT SCIENCE 2022; 27:80-91. [PMID: 34481715 DOI: 10.1016/j.tplants.2021.08.003] [Citation(s) in RCA: 94] [Impact Index Per Article: 47.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2021] [Revised: 08/01/2021] [Accepted: 08/02/2021] [Indexed: 06/13/2023]
Abstract
Plant root exudates serve pivotal roles in supporting plant development and interactions with the physicochemical and biological factors in the rhizosphere. Under stress conditions, root exudation is involved in enhancing plant resource-use efficiency and facilitating the crosstalk between plant and soil microbes to ameliorate stress. Although there are a large number of root exudates that remain to be characterized, recent technological advancements have allowed for the function of many exudate compounds to be elucidated. In this review, we discuss current knowledge about the key root exudates that modulate plant resource-use efficiency under various abiotic stresses including drought, aluminum toxicity, phosphorus, nitrogen, and iron deficiency. The role that key root exudates play in shaping microbial communities in the rhizosphere under stress conditions is also an important consideration addressed in this review.
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Affiliation(s)
- Yen Ning Chai
- Department of Agronomy and Horticulture, University of Nebraska - Lincoln, Lincoln, NE 68588, USA; Center for Plant Science Innovation, University of Nebraska - Lincoln, Lincoln, NE 68588, USA
| | - Daniel P Schachtman
- Department of Agronomy and Horticulture, University of Nebraska - Lincoln, Lincoln, NE 68588, USA; Center for Plant Science Innovation, University of Nebraska - Lincoln, Lincoln, NE 68588, USA.
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Zhang Y, Li C, Sun Q, Jiang C, Ding S, Chen M, Ma X, Zhong Z, Wang Y, Tsang DCW. Phosphorus acquisition strategy of Vallisneria natans in sediment based on in situ imaging techniques. ENVIRONMENTAL RESEARCH 2021; 202:111635. [PMID: 34242674 DOI: 10.1016/j.envres.2021.111635] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Revised: 06/22/2021] [Accepted: 06/30/2021] [Indexed: 06/13/2023]
Abstract
Phosphorus (P) availability is closely related to the distributions of pH, O2 and phosphatase activities in the rhizosphere of plants growing in soils and sediments. In this study, the P uptake processes and mechanisms of Vallisneria natans (V. natans) during two vegetation periods (i.e., week three and six) were revealed using three noninvasive 2D imaging techniques: planar optode (PO), diffusive gradients in thin films (DGT) and zymography. The results showed that increased phosphatase activity, O2 concentration and root-induced acidification were observed together in the rhizosphere of root segments and tips. In week three, when V. natans was young, the flux of DGT-labile P accumulated more in the rhizosphere in comparison with the bulk sediment. This was because increased phosphatase activity (of up to 35%) and root-induced acidification (with pH decreasing by up to 0.25) enhanced P acquisition of V. natans by the third week. However, the flux of DGT-labile P turned to depletion during weeks three to six of V. natans growth, after Fe plaque formed at the matured stage. The constant hydrolysis of phosphatase and acidification could not compensate for the P demand of the roots by the sixth week. At this stage, Fe plaque become the P pool, due to P fixation with solid Fe(III) hydroxides. Subsequently, V. natans roots acquired P from Fe plaque via organic acid complexation of Fe(III).
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Affiliation(s)
- Yi Zhang
- College of Hydrology and Water Resources, Hohai University, Nanjing, 210098, China; State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Cai Li
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Qin Sun
- College of Environment, Hohai University, Nanjing, 210098, China.
| | - Cuiling Jiang
- College of Hydrology and Water Resources, Hohai University, Nanjing, 210098, China.
| | - Shiming Ding
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Musong Chen
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Xin Ma
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Zhilin Zhong
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China
| | - Yan Wang
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, Nanjing, 210008, China; Nanjing EasySensor Environmental Technology Co., Ltd, Nanjing, 210018, China
| | - Daniel C W Tsang
- Department of Civil and Environmental Engineering, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong, China
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Liao M, Fang ZP, Liang YQ, Huang XH, Yang X, Chen SS, Xie XM, Xu CX, Guo JW. Effects of supplying silicon nutrient on utilization rate of nitrogen and phosphorus nutrients by rice and its soil ecological mechanism in a hybrid rice double-cropping system. J Zhejiang Univ Sci B 2021; 21:474-484. [PMID: 32478493 DOI: 10.1631/jzus.b1900516] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
This study was conducted to reveal the effects of silicon (Si) application on nutrient utilization efficiency by rice and on soil nutrient availability and soil microorganisms in a hybrid rice double-cropping planting system. A series of field experiments were conducted during 2017 and 2018. The results showed that Si nutrient supply improved grain yield and the utilization rates of nitrogen (N) and phosphorus (P) to an appropriate level for both early and late plantings, reaching a maximum at 23.4 kg/ha Si. The same trends were found for the ratios of available N (AN) to total N (TN) and available P (AP) to total P (TP), the soil microbial biomass carbon (MBC), microbial biomass nitrogen (MBN), microbial biomass phosphorus (MBP), and the ratios of MBN to TN and MBP to TP, at different levels of Si. Statistical analysis further revealed that Si application enhanced rice growth and increased the utilization rate of fertilizer due to an ecological mechanism, i.e., Si supply significantly increased the total amount of soil microorganisms in paddy soil compared to the control. This promoted the mineralization of soil nutrients and improved the availability and reserves of easily mineralized organic nutrients.
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Affiliation(s)
- Min Liao
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China
| | - Zhi-Ping Fang
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China
| | - Yu-Qi Liang
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China
| | - Xiao-Hui Huang
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China
| | - Xu Yang
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Experimental Teaching Center, College of Environment and Resources, Zhejiang University, Hangzhou 310058, China
| | - Shu-Sen Chen
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China
| | - Xiao-Mei Xie
- Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China.,Experimental Teaching Center, College of Environment and Resources, Zhejiang University, Hangzhou 310058, China
| | - Chang-Xu Xu
- Institute of Soil & Fertilizer and Resource & Environment, Jiangxi Academy of Agricultural Sciences, Nanchang 330200, China
| | - Jia-Wen Guo
- College of Environmental and Resource Science, Zhejiang University, Hangzhou 310058, China.,Zhejiang Provincial Key Laboratory of Subtropical Soil and Plant Nutrition, Hangzhou 310058, China
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Touhami D, McDowell RW, Condron LM. Role of Organic Anions and Phosphatase Enzymes in Phosphorus Acquisition in the Rhizospheres of Legumes and Grasses Grown in a Low Phosphorus Pasture Soil. PLANTS (BASEL, SWITZERLAND) 2020; 9:E1185. [PMID: 32932934 PMCID: PMC7570192 DOI: 10.3390/plants9091185] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Revised: 09/08/2020] [Accepted: 09/09/2020] [Indexed: 11/16/2022]
Abstract
Rhizosphere processes play a critical role in phosphorus (P) acquisition by plants and microbes, especially under P-limited conditions. Here, we investigated the impacts of nutrient addition and plant species on plant growth, rhizosphere processes, and soil P dynamics. In a glasshouse experiment, blue lupin (Lupinus angustifolius), white clover (Trifolium repens L.), perennial ryegrass (Lolium perenne L.), and wheat (Triticum aestivum L.) were grown in a low-P pasture soil for 8 weeks with and without the single and combined addition of P (33 mg kg-1) and nitrogen (200 mg kg-1). Phosphorus addition increased plant biomass and total P content across plant species, as well as microbial biomass P in white clover and ryegrass. Alkaline phosphatase activity was higher for blue lupin. Legumes showed higher concentrations of organic anions compared to grasses. After P addition, the concentrations of organic anions increased by 11-,10-, 5-, and 2-fold in the rhizospheres of blue lupin, white clover, wheat, and ryegrass, respectively. Despite the differences in their chemical availability (as assessed by P fractionation), moderately labile inorganic P and stable organic P were the most depleted fractions by the four plant species. Inorganic P fractions were depleted similarly between the four plant species, while blue lupin exhibited a strong depletion of stable organic P. Our findings suggest that organic anions were not related to the acquisition of inorganic P for legumes and grasses. At the same time, alkaline phosphatase activity was associated with the mobilization of stable organic P for blue lupin.
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Affiliation(s)
- Driss Touhami
- Faculty of Agriculture and Life Sciences, P.O. Box 85084, Lincoln University, Lincoln 7647, Christchurch, New Zealand; (R.W.M.); (L.M.C.)
- AgroBioSciences Program, Mohammed VI Polytechnic University (UM6P), Hay Moulay Rachid, Ben Guerir 43150, Morocco
| | - Richard W. McDowell
- Faculty of Agriculture and Life Sciences, P.O. Box 85084, Lincoln University, Lincoln 7647, Christchurch, New Zealand; (R.W.M.); (L.M.C.)
- AgResearch Limited, Lincoln Research Centre, Private Bag 4749, Christchurch, New Zealand
| | - Leo M. Condron
- Faculty of Agriculture and Life Sciences, P.O. Box 85084, Lincoln University, Lincoln 7647, Christchurch, New Zealand; (R.W.M.); (L.M.C.)
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Siao W, Coskun D, Baluška F, Kronzucker HJ, Xu W. Root-Apex Proton Fluxes at the Centre of Soil-Stress Acclimation. TRENDS IN PLANT SCIENCE 2020; 25:794-804. [PMID: 32673580 DOI: 10.1016/j.tplants.2020.03.002] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/30/2019] [Revised: 02/13/2020] [Accepted: 03/04/2020] [Indexed: 05/22/2023]
Abstract
Proton (H+) fluxes in plant roots play critical roles in maintaining root growth and facilitating plant responses to multiple soil stresses, including fluctuations in nutrient supply, salt infiltration, and water stress. Soil mining for nutrients and water, rates of nutrient uptake, and the modulation of cell expansion all depend on the regulation of root H+ fluxes, particularly at the root apex, mediated primarily by the activity of plasma membrane (PM) H+-ATPases. Here, we summarize recent findings on the regulatory mechanisms of H+ fluxes at the root apex under three abiotic stress conditions - phosphate deficiency, salinity stress, and water deficiency - and present an integrated physiomolecular view of the functions of H+ fluxes in maintaining root growth in the acclimation to soil stress.
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Affiliation(s)
- Wei Siao
- Center for Plant Water-Use and Nutrition Regulation and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Jinshan Fuzhou 350002, China; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052 Ghent, Belgium; Center for Plant Systems Biology, VIB, 9052 Ghent, Belgium
| | - Devrim Coskun
- Département de Phytologie, Faculté des Sciences de l'Agriculture et de l'Alimentation, Université Laval, Québec, QC G1V 0A6, Canada
| | - František Baluška
- Institute of Cellular and Molecular Botany, University of Bonn, 53115 Bonn, Germany
| | - Herbert J Kronzucker
- School of Agriculture and Food, Faculty of Veterinary and Agricultural Sciences, The University of Melbourne, VIC 3010, Australia; Faculty of Land and Food Systems, University of British Columbia, Vancouver, BC V6T 1Z4, Canada.
| | - Weifeng Xu
- Center for Plant Water-Use and Nutrition Regulation and College of Life Sciences, Joint International Research Laboratory of Water and Nutrient in Crop, Fujian Agriculture and Forestry University, Jinshan Fuzhou 350002, China.
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McKay Fletcher DM, Ruiz S, Dias T, Petroselli C, Roose T. Linking root structure to functionality: the impact of root system architecture on citrate-enhanced phosphate uptake. THE NEW PHYTOLOGIST 2020; 227:376-391. [PMID: 32198932 DOI: 10.1111/nph.16554] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/11/2019] [Accepted: 03/03/2020] [Indexed: 05/06/2023]
Abstract
Root citrate exudation is thought to be important for phosphate solubilization. Previous research has concluded that cluster-like roots benefit most from this exudation in terms of increased phosphate uptake, suggesting that root structure plays an important role in citrate-enhanced uptake (additional phosphate uptake due to citrate exudation). Time-resolved computed tomography images of wheat root systems were used as the geometry for 3D citrate-phosphate solubilization models. Citrate-enhanced uptake was correlated with morphological measures of the root systems to determine which had the most benefit. A large variation of citrate-enhanced uptake over 11 root structures was observed. Root surface area dominated absolute phosphate uptake, but did not explain citrate-enhanced uptake. Number of exuding root tips correlated well with citrate-enhanced uptake. Root tips in close proximity could collectively exude high amounts of citrate, resulting in a delayed spike in citrate-enhanced uptake. Root system architecture plays an important role in citrate-enhanced uptake. Singular morphological measurements of the root systems cannot entirely explain variations in citrate-enhanced uptake. Root systems with many tips would benefit greatly from citrate exudation. Quantifying citrate-enhanced uptake experimentally is difficult as variations in root surface area would overwhelm citrate benefits.
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Affiliation(s)
- Daniel M McKay Fletcher
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Siul Ruiz
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Tiago Dias
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Chiara Petroselli
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
| | - Tiina Roose
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, Southampton, SO17 1BJ, UK
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17
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Tracy SR, Nagel KA, Postma JA, Fassbender H, Wasson A, Watt M. Crop Improvement from Phenotyping Roots: Highlights Reveal Expanding Opportunities. TRENDS IN PLANT SCIENCE 2020; 25:105-118. [PMID: 31806535 DOI: 10.1016/j.tplants.2019.10.015] [Citation(s) in RCA: 80] [Impact Index Per Article: 20.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2019] [Revised: 10/30/2019] [Accepted: 10/31/2019] [Indexed: 05/21/2023]
Abstract
Root systems determine the water and nutrients for photosynthesis and harvested products, underpinning agricultural productivity. We highlight 11 programs that integrated root traits into germplasm for breeding, relying on phenotyping. Progress was successful but slow. Today's phenotyping technologies will speed up root trait improvement. They combine multiple new alleles in germplasm for target environments, in parallel. Roots and shoots are detected simultaneously and nondestructively, seed to seed measures are automated, and field and laboratory technologies are increasingly linked. Available simulation models can aid all phenotyping decisions. This century will see a shift from single root traits to rhizosphere selections that can be managed dynamically on farms and a shift to phenotype-based improvement to accommodate the dynamic complexity of whole crop systems.
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Affiliation(s)
- Saoirse R Tracy
- School of Agriculture & Food Science, University College Dublin, Dublin, Ireland
| | - Kerstin A Nagel
- Institute for Bio and Geosciences-2, Plant Sciences, Forschungszentrum Juelich GmbH, 52428 Juelich, Germany
| | - Johannes A Postma
- Institute for Bio and Geosciences-2, Plant Sciences, Forschungszentrum Juelich GmbH, 52428 Juelich, Germany
| | - Heike Fassbender
- Institute for Bio and Geosciences-2, Plant Sciences, Forschungszentrum Juelich GmbH, 52428 Juelich, Germany
| | - Anton Wasson
- CSIRO Agriculture and Food, Canberra, Australian Capital Territory, Australia
| | - Michelle Watt
- Institute for Bio and Geosciences-2, Plant Sciences, Forschungszentrum Juelich GmbH, 52428 Juelich, Germany.
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McKay Fletcher DM, Shaw R, Sánchez-Rodríguez AR, Daly KR, van Veelen A, Jones DL, Roose T. Quantifying citrate-enhanced phosphate root uptake using microdialysis. PLANT AND SOIL 2019; 461:69-89. [PMID: 34720207 PMCID: PMC8550755 DOI: 10.1007/s11104-019-04376-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/29/2019] [Accepted: 11/13/2019] [Indexed: 06/13/2023]
Abstract
AIMS Organic acid exudation by plant roots is thought to promote phosphate (P) solubilisation and bioavailability in soils with poorly available nutrients. Here we describe a new combined experimental (microdialysis) and modelling approach to quantify citrate-enhanced P desorption and its importance for root P uptake. METHODS To mimic the rhizosphere, microdialysis probes were placed in soil and perfused with citrate solutions (0.1, 1.0 and 10 mM) and the amount of P recovered from soil used to quantify rhizosphere P availability. Parameters in a mathematical model describing probe P uptake, citrate exudation, P movement and citrate-enhanced desorption were fit to the experimental data. These parameters were used in a model of a root which exuded citrate and absorbed P. The importance of soil citrate-P mobilisation for root P uptake was then quantified using this model. RESULTS A plant needs to exude citrate at a rate of 0.73 μmol cm-1 of root h-1 to see a significant increase in P absorption. Microdialysis probes with citrate in the perfusate were shown to absorb similar quantities of P to an exuding root. CONCLUSION A single root exuding citrate at a typical rate (4.3 × 10-5 μmol m-1 of root h-1) did not contribute significantly to P uptake. Microdialysis probes show promise for measuring rhizosphere processes when calibration experiments and mathematical modelling are used to decouple microdialysis and rhizosphere mechanisms.
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Affiliation(s)
- D. M. McKay Fletcher
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, University Road, Southampton, SO17 1BJ UK
| | - R. Shaw
- Environment Centre Wales, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
| | - A. R. Sánchez-Rodríguez
- Environment Centre Wales, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
- Agronomy Department, University of Córdoba, Campus de Rabanales. Edificio C4 Celestino Mutis, 14071 Córdoba, Spain
| | - K. R. Daly
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, University Road, Southampton, SO17 1BJ UK
| | - A. van Veelen
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, University Road, Southampton, SO17 1BJ UK
| | - D. L. Jones
- Environment Centre Wales, Bangor University, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
- SoilsWest, UWA School of Agriculture and Environment, The University of Western Australia, Perth, WA 6009 Australia
| | - T. Roose
- Bioengineering Sciences Research Group, Department of Mechanical Engineering, School of Engineering Sciences, Faculty of Engineering and Physical Sciences, University of Southampton, University Road, Southampton, SO17 1BJ UK
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Xu Q, Wang X, Tang C. Rhizosphere priming of two near-isogenic wheat lines varying in citrate efflux under different levels of phosphorus supply. ANNALS OF BOTANY 2019; 124:1033-1042. [PMID: 31209480 PMCID: PMC6881230 DOI: 10.1093/aob/mcz082] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/13/2019] [Accepted: 05/13/2019] [Indexed: 05/09/2023]
Abstract
BACKGROUNDS AND AIMS The rhizosphere priming effect (RPE) has been explained from the perspective of microbial responses to root exudates and nutrient availability. This study introduced a chemical process that could also contribute to RPE: root exudates (organic acid ligands) could liberate mineral-protected carbon (C) in soil for microbial degradation. METHODS Wheat (Triticum aestivum L.) near-isogenic lines varying in citrate efflux were grown for 6 weeks in a C4 soil supplied with either low (10 μg g-1) or high P (40 μg g-1). Total below-ground CO2 was trapped and partitioned for determination of soil organic C decomposition and RPE using a stable isotopic tracing technique. Mineral dissolution was examined by incubating soil with citric ligand at a series of concentrations. KEY RESULTS High P increased RPE (81 %), shoot (32 %) and root biomass (57 %), root-derived CO2-C (20 %), microbial biomass C (28 %) and N (100%), soil respiration (20 %) and concentrations of water-extractable P (30 %), Fe (43 %) and Al (190 %), but decreased inorganic N in the rhizosphere. Compared with Egret-Burke, wheat line Egret-Burke TaMATE1B with citrate efflux had lower inorganic N, microbial biomass C (16 %) and N (30 %) in the rhizosphere but greater RPE (18 %), shoot biomass (12 %) and root-derived CO2-C (low P 36 %, high P 13 %). Egret-Burke TaMATE1B also had higher concentrations of water-extractable P, Fe and Al in the rhizosphere, indicating the release of mineral-protected C. In addition, citrate ligand facilitated Fe and Al release from soil, with their concentrations rising with increasing ligand concentration and incubation time. CONCLUSIONS While high P supply increased microbial growth and RPE possibly due to higher total root exudation, citrate efflux from the root might have facilitated the liberation of mineral-bound C, leading to the higher RPE under Egret-Burke TaMATE1B. Mineral dissolution may be an important process that regulates RPE and should be considered in future RPE research.
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Affiliation(s)
- Qiao Xu
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, VIC, Australia
| | - Xiaojuan Wang
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, VIC, Australia
| | - Caixian Tang
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, VIC, Australia
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20
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Lynch JP. Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture. THE NEW PHYTOLOGIST 2019; 223:548-564. [PMID: 30746704 DOI: 10.1111/nph.15738] [Citation(s) in RCA: 200] [Impact Index Per Article: 40.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/13/2018] [Accepted: 01/29/2019] [Indexed: 05/22/2023]
Abstract
Nutrient-efficient crops are a solution to the two grand challenges of modern agriculture: improving food security while reducing environmental impacts. The primary challenges are (1) nitrogen (N) and phosphorus (P) efficiency; (2) potassium (K), calcium (Ca), and magnesium (Mg) efficiency for acid soils; and (3) iron (Fe) and zinc (Zn) efficiency for alkaline soils. Root phenotypes are promising breeding targets for each of these. The Topsoil Foraging ideotype is beneficial for P capture and should also be useful for capture of K, Ca, and Mg in acid soils. The Steep, Cheap, and Deep ideotype for subsoil foraging is beneficial for N and water capture. Fe and Zn capture can be improved by targeting mechanisms of metal mobilization in the rhizosphere. Root hairs and phenes that reduce the metabolic cost of soil exploration should be prioritized in breeding programs. Nutrient-efficient crops should provide benefits at all input levels. Although our current understanding is sufficient to deploy root phenotypes for improved nutrient capture in crop breeding, this complex topic does not receive the resources it merits in either applied or basic plant biology. Renewed emphasis on these topics is needed in order to develop the nutrient-efficient crops urgently needed in global agriculture.
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Affiliation(s)
- Jonathan P Lynch
- Department of Plant Science, The Pennsylvania State University, University Park, PA, 16802, USA
- School of Biosciences, University of Nottingham, Sutton Bonington, Leicestershire, LE12 5RD, UK
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Dong J, Grylls S, Hunt J, Armstrong R, Delhaize E, Tang C. Elevated CO2 (free-air CO2 enrichment) increases grain yield of aluminium-resistant but not aluminium-sensitive wheat (Triticum aestivum) grown in an acid soil. ANNALS OF BOTANY 2019; 123:461-468. [PMID: 30219854 PMCID: PMC6377095 DOI: 10.1093/aob/mcy171] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2018] [Accepted: 08/20/2018] [Indexed: 06/08/2023]
Abstract
BACKGROUND AND AIMS Soil acidity currently limits root growth and crop production in many regions, and climate change is leading to uncertainties regarding future food supply. However, it is unknown how elevated CO2 (eCO2) affects the performance of wheat crops in acid soils under field conditions. We investigated the effects of eCO2 on plant growth and yield of three pairs of near-isogenic hexaploid wheat lines differing in alleles of aluminium-resistant genes TaALMT1 (conferring root malate efflux) and TaMATE1B (conferring citrate efflux). METHODS Plants were grown until maturity in an acid soil under ambient CO2 (aCO2; 400 µmol mol-1) and eCO2 (550 µmol mol-1) in a soil free-air CO2 enrichment facility (SoilFACE). Growth parameters and grain yields were measured. KEY RESULTS Elevated CO2 increased grain yield of lines carrying TaMATE1B by 22 % and lines carrying only TaALMT1 by 31 %, but did not increase the grain yield of Al3+-sensitive lines. Although eCO2 promoted tiller formation, coarse root length and root biomass of lines carrying TaMATE1B, it did not affect ear number, and it therefore limited yield potential. By contrast, eCO2 decreased or did not change these parameters for lines carrying only TaALMT1, and enhanced biomass allocation to grains thereby resulting in increased grain yield. Despite TaMATE1B being less effective than TaALMT1 at conferring Al3+ resistance based on root growth, the gene promoted grain yield to a similar level to TaALMT1 when the plants were grown in acid soil. Furthermore, TaALMT1 and TaMATE1B were not additive in their effects. CONCLUSIONS As atmospheric CO2 increases, it is critical that both Al3+-resistance genes (particularly TaALMT1) should be maintained in hexaploid wheat germplasm in order for yield increases from CO2 fertilization to be realized in acid soils.
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Affiliation(s)
- Jinlong Dong
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, Australia
| | - Stephen Grylls
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, Australia
| | - James Hunt
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, Australia
| | | | | | - Caixian Tang
- Department of Animal, Plant and Soil Sciences, Centre for AgriBioscience, La Trobe University, Melbourne Campus, Bundoora, Australia
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Canarini A, Kaiser C, Merchant A, Richter A, Wanek W. Root Exudation of Primary Metabolites: Mechanisms and Their Roles in Plant Responses to Environmental Stimuli. FRONTIERS IN PLANT SCIENCE 2019; 10:157. [PMID: 30881364 PMCID: PMC6407669 DOI: 10.3389/fpls.2019.00157] [Citation(s) in RCA: 277] [Impact Index Per Article: 55.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2018] [Accepted: 01/29/2019] [Indexed: 05/19/2023]
Abstract
Root exudation is an important process determining plant interactions with the soil environment. Many studies have linked this process to soil nutrient mobilization. Yet, it remains unresolved how exudation is controlled and how exactly and under what circumstances plants benefit from exudation. The majority of root exudates including primary metabolites (sugars, amino acids, and organic acids) are believed to be passively lost from the root and used by rhizosphere-dwelling microbes. In this review, we synthetize recent advances in ecology and plant biology to explain and propose mechanisms by which root exudation of primary metabolites is controlled, and what role their exudation plays in plant nutrient acquisition strategies. Specifically, we propose a novel conceptual framework for root exudates. This framework is built upon two main concepts: (1) root exudation of primary metabolites is driven by diffusion, with plants and microbes both modulating concentration gradients and therefore diffusion rates to soil depending on their nutritional status; (2) exuded metabolite concentrations can be sensed at the root tip and signals are translated to modify root architecture. The flux of primary metabolites through root exudation is mostly located at the root tip, where the lack of cell differentiation favors diffusion of metabolites to the soil. We show examples of how the root tip senses concentration changes of exuded metabolites and translates that into signals to modify root growth. Plants can modify the concentration of metabolites either by controlling source/sink processes or by expressing and regulating efflux carriers, therefore challenging the idea of root exudation as a purely unregulated passive process. Through root exudate flux, plants can locally enhance concentrations of many common metabolites, which can serve as sensors and integrators of the plant nutritional status and of the nutrient availability in the surrounding environment. Plant-associated micro-organisms also constitute a strong sink for plant carbon, thereby increasing concentration gradients of metabolites and affecting root exudation. Understanding the mechanisms of and the effects that environmental stimuli have on the magnitude and type of root exudation will ultimately improve our knowledge of processes determining soil CO2 emissions, ecosystem functioning, and how to improve the sustainability of agricultural production.
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Affiliation(s)
- Alberto Canarini
- Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, Research Network ‘Chemistry Meets Microbiology’, University of Vienna, Vienna, Austria
- *Correspondence: Alberto Canarini,
| | - Christina Kaiser
- Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, Research Network ‘Chemistry Meets Microbiology’, University of Vienna, Vienna, Austria
| | - Andrew Merchant
- Faculty of Science, Sydney Institute of Agriculture, The University of Sydney, Sydney, NSW, Australia
| | - Andreas Richter
- Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, Research Network ‘Chemistry Meets Microbiology’, University of Vienna, Vienna, Austria
| | - Wolfgang Wanek
- Terrestrial Ecosystem Research, Department of Microbiology and Ecosystem Science, Research Network ‘Chemistry Meets Microbiology’, University of Vienna, Vienna, Austria
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Solubility, Diffusion and Crop Uptake of Phosphorus in Three Different Struvites. SUSTAINABILITY 2018. [DOI: 10.3390/su11010134] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Phosphate (P) fertilisers produced from waste recycling (e.g., struvite) are considered to be more sustainable than those conventionally produced from the processing of rock P (e.g., highly soluble triple superphosphate, TSP). In this study, we used 33P to monitor struvite dissolution and P diffusion into the soil in comparison to TSP. We evaluated three distinct chemical formulations of struvite, namely: (1) Crystal Green® (CG) produced in an industrial process from sewage sludge; (2) natural struvite (NS) precipitated in swine manure pipelines; and (3) laboratory precipitated struvite (PS) from chicken manure by a new process of P recovery. P diffusion was evaluated in soil columns over a 21-day period. This was complimented with a pot experiment in which wheat and soybean were cultivated in a Eutric Cambisol for 38 days in the presence of either struvite or TSP. P fertilisers were applied at a dose equivalent to 17.5 kg P ha−1 and fertiliser solubility determined by recovering soil solution. All three types of struvite tested showed reduced P solubility and mobility relative to TSP, but a comparison of the three struvites has shown that their P solubilities differed by a factor of two, with the greatest P release (up to 85% of total P) obtained from a struvite recovered from poultry manure and containing other useful nutrients (K, S and Ca). All struvites enhanced crop growth and P uptake of wheat and soybean relative to a nil P control, with up to 80% P recovery compared to TSP. These results further support the more widespread use of struvite as a sustainable source of P to plants despite its low water solubility.
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Zhang Y, Fernie AR. On the role of the tricarboxylic acid cycle in plant productivity. JOURNAL OF INTEGRATIVE PLANT BIOLOGY 2018; 60:1199-1216. [PMID: 29917310 DOI: 10.1111/jipb.12690] [Citation(s) in RCA: 77] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2018] [Accepted: 06/18/2018] [Indexed: 05/10/2023]
Abstract
The tricarboxylic acid (TCA) cycle is one of the canonical energy pathways of living systems, as well as being an example of a pathway in which dynamic enzyme assemblies, or metabolons, are well characterized. The role of the enzymes have been the subject of saturated transgenesis approaches, whereby the expression of the constituent enzymes were reduced or knocked out in order to ascertain their in vivo function. Some of the resultant plants exhibited improved photosynthesis and plant growth, under controlled greenhouse conditions. In addition, overexpression of the endogenous genes, or heterologous forms of a number of the enzymes, has been carried out in tomato fruit and the roots of a range of species, and in some instances improvement in fruit yield and postharvest properties and plant performance, under nutrient limitation, have been reported, respectively. Given a number of variants, in nature, we discuss possible synthetic approaches involving introducing these variants, or at least a subset of them, into plants. We additionally discuss the likely consequences of introducing synthetic metabolons, wherein certain pairs of reactions are artificially permanently assembled into plants, and speculate as to future strategies to further improve plant productivity by manipulation of the core metabolic pathway.
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Affiliation(s)
- Youjun Zhang
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, 4000 Plovdiv, Bulgaria
| | - Alisdair R Fernie
- Max-Planck-Institute of Molecular Plant Physiology, Am Mühlenberg 1, 14476 Potsdam-Golm, Germany
- Center of Plant System Biology and Biotechnology, 4000 Plovdiv, Bulgaria
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25
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Giles CD, Richardson AE, Cade-Menun BJ, Mezeli MM, Brown LK, Menezes-Blackburn D, Darch T, Blackwell MS, Shand CA, Stutter MI, Wendler R, Cooper P, Lumsdon DG, Wearing C, Zhang H, Haygarth PM, George TS. Phosphorus acquisition by citrate- and phytase-exuding Nicotiana tabacum plant mixtures depends on soil phosphorus availability and root intermingling. PHYSIOLOGIA PLANTARUM 2018; 163:356-371. [PMID: 29498417 DOI: 10.1111/ppl.12718] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Revised: 02/08/2018] [Accepted: 02/27/2018] [Indexed: 05/16/2023]
Abstract
Citrate and phytase root exudates contribute to improved phosphorus (P) acquisition efficiency in Nicotiana tabacum (tobacco) when both exudates are produced in a P deficient soil. To test the importance of root intermingling in the interaction of citrate and phytase exudates, Nicotiana tabacum plant-lines with constitutive expression of heterologous citrate (Cit) or fungal phytase (Phy) exudation traits were grown under two root treatments (roots separated or intermingled) and in two soils with contrasting soil P availability. Complementarity of plant mixtures varying in citrate efflux rate and mobility of the expressed phytase in soil was determined based on plant biomass and P accumulation. Soil P composition was evaluated using solution 31 P NMR spectroscopy. In the soil with limited available P, positive complementarity occurred in Cit+Phy mixtures with roots intermingled. Root separation eliminated positive interactions in mixtures expressing the less mobile phytase (Aspergillus niger PhyA) whereas positive complementarity persisted in mixtures that expressed the more mobile phytase (Peniophora lycii PhyA). Soils from Cit+Phy mixtures contained less inorganic P and more organic P compared to monocultures. Exudate-specific strategies for the acquisition of soil P were most effective in P-limited soil and depended on citrate efflux rate and the relative mobility of the expressed phytase in soil. Plant growth and soil P utilization in plant systems with complementary exudation strategies are expected to be greatest where exudates persist in soil and are expressed synchronously in space and time.
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Affiliation(s)
- Courtney D Giles
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
- University of Vermont, College of Engineering and Mathematical Sciences, Burlington VT, 05405, USA (current)
| | - Alan E Richardson
- CSIRO Agriculture & Food, PO Box 1700, Canberra ACT, 2601, Australia
| | | | - Malika M Mezeli
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
| | - Lawrie K Brown
- University of Vermont, College of Engineering and Mathematical Sciences, Burlington VT, 05405, USA (current)
| | - Daniel Menezes-Blackburn
- Lancaster University: Lancaster Environment Centre, Lancaster, LA1 4YQ, UK
- Department of Soils, Water and Agricultural Engineering, College of Agricultural and Marine Sciences, Sultan Qaboos University, PO Box 34, Al-khod, 123, Sultanate of Oman (current)
| | - Tegan Darch
- Rothamsted Research: North Wyke, Okehampton, Devon, EX20 2SB, UK
| | | | - Charles A Shand
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
| | - Marc I Stutter
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
| | - Renate Wendler
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
| | - Patricia Cooper
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
| | - David G Lumsdon
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
| | - Catherine Wearing
- Lancaster University: Lancaster Environment Centre, Lancaster, LA1 4YQ, UK
| | - Hao Zhang
- Lancaster University: Lancaster Environment Centre, Lancaster, LA1 4YQ, UK
| | - Philip M Haygarth
- Lancaster University: Lancaster Environment Centre, Lancaster, LA1 4YQ, UK
| | - Timothy S George
- The James Hutton Institute, Aberdeen AB15 8QH and Dundee, DD2 5DA, Scotland, UK
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26
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Kreuzeder A, Santner J, Scharsching V, Oburger E, Hoefer C, Hann S, Wenzel WW. In situ observation of localized, sub-mm scale changes of phosphorus biogeochemistry in the rhizosphere. PLANT AND SOIL 2018; 424:573-589. [PMID: 29706670 PMCID: PMC5902520 DOI: 10.1007/s11104-017-3542-0] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Accepted: 12/19/2017] [Indexed: 05/19/2023]
Abstract
AIMS We imaged the sub-mm distribution of labile P and pH in the rhizosphere of three plant species to localize zones and hot spots of P depletion and accumulation along individual root axes and to relate our findings to nutrient acquisition / root exudation strategies in P-limited conditions at different soil pH, and to mobilization pattern of other elements (Al, Fe, Ca, Mg, Mn) in the rhizosphere. METHODS Sub-mm distributions of labile elemental patterns were sampled using diffusive gradients in thin films and analysed using laser ablation inductively coupled plasma mass spectrometry. pH images were taken using planar optodes. RESULTS We found distinct patterns of highly localized labile P depletion and accumulation reflecting the complex interaction of plant P acquisition strategies with soil pH, fertilizer treatment, root age, and elements (Al, Fe, Ca) that are involved in P biogeochemistry in soil. We show that the plants respond to P deficiency either by acidification or alkalization, depending on initial bulk soil pH and other factors of P solubility. CONCLUSIONS P solubilization activities of roots are highly localized, typically around root apices, but may also extend towards the extension / root hair zone.
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Affiliation(s)
- Andreas Kreuzeder
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
- Land Salzburg, Natur- und Umweltschutz, Gewerbe (Abteilung 5), Michael-Pacher-Straße 36, A-5020 Salzburg, Austria
| | - Jakob Santner
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
- Department of Crop Sciences, Division of Agronomy, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
| | - Vanessa Scharsching
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
| | - Eva Oburger
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
- Department of Microbiology and Ecosystem Science, Division of Terrestrial Ecosystem Research, University of Vienna, Althanstrasse 14, A-1090 Vienna, Austria
| | - Christoph Hoefer
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
| | - Stephan Hann
- Department of Chemistry, Vienna, University of Natural Resources and Life Sciences, Vienna, Muthgasse 18, A-1190 Vienna, Austria
- Austrian Centre of Industrial Biotechnology (ACIB), Muthgasse 18, 1190 Vienna, Austria
| | - Walter W. Wenzel
- Department of Forest and Soil Sciences, Institute of Soil Research, University of Natural Resources and Life Sciences, Vienna, Konrad-Lorenz-Strasse 24, A-3430 Tulln, Austria
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Kaur N, Erickson TE, Ball AS, Ryan MH. A review of germination and early growth as a proxy for plant fitness under petrogenic contamination - knowledge gaps and recommendations. THE SCIENCE OF THE TOTAL ENVIRONMENT 2017; 603-604:728-744. [PMID: 28372821 DOI: 10.1016/j.scitotenv.2017.02.179] [Citation(s) in RCA: 24] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Revised: 02/21/2017] [Accepted: 02/22/2017] [Indexed: 05/20/2023]
Abstract
Germination-an important stage in the life cycle of plants-is susceptible to the presence of soil contaminants. Since the early 1990s, the use of germination tests to screen multiple plant species to select candidates for phytoremediation has received much attention. This is due to its inexpensive methodology and fast assessment relative to greenhouse or field growth studies. Surprisingly, no comprehensive synthesis is available of these studies in the scientific literature. As more plant species are added to phytoremediation databases, it is important to encapsulate the knowledge thus far and revise protocols. In this review, we have summarised previously-documented effects of petroleum hydrocarbons on germination and seedling growth. The methods and materials of previous studies are presented in tabulated form. Common practice includes the use of cellulose acetate filter paper, plastic Petri dishes, and low numbers of seeds and replicates. A general bias was observed for the screening of cultivated crops as opposed to native species, even though the latter may be better suited to site conditions. The relevance of germination studies as important ecotoxicological tools is highlighted with the proposed use of root imaging software. Screening of novel plant species, particularly natives, is recommended with selection focussed on (i) species phylogeny, (ii) plant morphological and functional traits, and (iii) tolerance towards harsh environmental stresses. Recommendations for standardised protocols for germination and early growth monitoring are made in order to improve the robustness of statistical modelling and species selection in future phytoremediation evaluations and field programs.
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Affiliation(s)
- Navjot Kaur
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia.
| | - Todd E Erickson
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia; Kings Park and Botanic Garden, Fraser Ave, Kings Park, WA 6005, Australia
| | - Andrew S Ball
- School of Science, Centre for Environmental Sustainability and Remediation, RMIT University, Plenty Road, Bundoora, Victoria 3083, Australia
| | - Megan H Ryan
- School of Plant Biology, The University of Western Australia, 35 Stirling Highway, Crawley, WA 6009, Australia
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28
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Gong X, McDonald G. QTL mapping of root traits in phosphorus-deficient soils reveals important genomic regions for improving NDVI and grain yield in barley. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2017; 130:1885-1902. [PMID: 28593327 DOI: 10.1007/s00122-017-2931-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/11/2016] [Accepted: 05/30/2017] [Indexed: 05/05/2023]
Abstract
Major QTLs for root rhizosheath size are not correlated with grain yield or yield response to phosphorus. Important QTLs were found to improve phosphorus efficiency. Root traits are important for phosphorus (P) acquisition, but they are often difficult to characterize and their breeding values are seldom assessed under field conditions. This has shed doubts on using seedling-based criteria of root traits to select and breed for P efficiency. Eight root traits were assessed under controlled conditions in a barley doubled-haploid population in soils differing in P levels. The population was also phenotyped for grain yield, normalized difference vegetation index (NDVI), grain P uptake and P utilization efficiency at maturity (PutEGY) under field conditions. Several quantitative traits loci (QTLs) from the root screening and the field trials were co-incident. QTLs for root rhizosheath size and root diameter explained the highest phenotypic variation in comparison to QTLs for other root traits. Shared QTLs were found between root diameter and grain yield, and total root length and PutEGY. A common major QTL for rhizosheath size and NDVI was mapped to the HvMATE gene marker on chromosome 4H. Collocations between major QTLs for NDVI and grain yield were detected on chromosomes 6H and 7H. When results from BIP and MET were combined, QTLs detected for grain yield were also those QTLs found for NDVI. QTLs qGY5H, qGY6H and qGY7Hb on 7H were robust QTLs in improving P efficiency. A selection of multiple loci may be needed to optimize the breeding outcomes due to the QTL x Environment interaction. We suggest that rhizosheath size alone is not a reliable trait to predict P efficiency or grain yield.
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Affiliation(s)
- Xue Gong
- School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, 5064, Adelaide, SA, Australia.
| | - Glenn McDonald
- School of Agriculture, Food and Wine, The University of Adelaide, Waite Campus, 5064, Adelaide, SA, Australia
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29
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Liu M, Rathjen T, Weligama K, Forrest K, Hayden M, Delhaize E. Analysis of aneuploid lines of bread wheat to map chromosomal locations of genes controlling root hair length. ANNALS OF BOTANY 2017; 119:1333-1341. [PMID: 28402495 PMCID: PMC5604551 DOI: 10.1093/aob/mcx030] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/13/2016] [Accepted: 02/13/2017] [Indexed: 05/28/2023]
Abstract
Background and Aims Long root hairs enable the efficient uptake of poorly mobile nutrients such as phosphorus. Mapping the chromosomal locations of genes that control root hair length can help exploit the natural variation within crops to develop improved cultivars. Genetic stocks of the wheat cultivar 'Chinese Spring' were used to map genes that control root hair length. Methods Aneuploid stocks of 'Chinese Spring' were screened using a rapid method based on rhizosheath size and then selected lines were assayed for root hair length to identify chromosomes harbouring genes controlling root hair length. A series of lines with various fractional deletions of candidate chromosomes were then screened to map the root hair loci more accurately. A line with a deletion in chromosome 5A was analysed with a 90 000 single nucleotide polymorphism (SNP) array. The phosphorus acquisition efficiency (PAE) of one deletion line was compared with that of euploid 'Chinese Spring' by growing the seedlings in pots at low and luxury phosphorus supplies. Key Results Chromosomes 1A, 1D and 5A were found to harbour genes controlling root hair length. The 90 000 SNP array identified two candidate genes controlling root hair length located on chromosome 5A. The line with a deletion in chromosome 5A had root hairs that were approx. 20 % shorter than euploid 'Chinese Spring', but this was insufficient to reduce its PAE. Conclusions A rapid screen for rhizosheath size enabled chromosomal regions controlling root hair length to be mapped in the wheat cultivar 'Chinese Spring' and subsequent analysis with an SNP array identified candidate genes controlling root hair length. The difference in root hair length between euploid 'Chinese Spring' and a deletion line identified in the rapid screen was still apparent, albeit attenuated, when the seedlings were grown on a fully fertilized soil.
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Affiliation(s)
- Miao Liu
- Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130012, PR China
| | - Tina Rathjen
- Commonwealth Scientific and Industrial Research Organization, Agriculture and Food, GPO Box 1700, Canberra, ACT 2601, Australia
| | - Kumara Weligama
- Commonwealth Scientific and Industrial Research Organization, Agriculture and Food, GPO Box 1700, Canberra, ACT 2601, Australia
| | - Kerrie Forrest
- Department of Economic Development, Jobs, Transport and ResourcesAgribio, Bundoora, Victoria 3083, Australia
| | - Matthew Hayden
- Department of Economic Development, Jobs, Transport and ResourcesAgribio, Bundoora, Victoria 3083, Australia
| | - Emmanuel Delhaize
- Commonwealth Scientific and Industrial Research Organization, Agriculture and Food, GPO Box 1700, Canberra, ACT 2601, Australia
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Shen P, Murphy DV, George SJ, Lapis-Gaza H, Xu M, Gleeson DB. Increasing the Size of the Microbial Biomass Altered Bacterial Community Structure which Enhances Plant Phosphorus Uptake. PLoS One 2016; 11:e0166062. [PMID: 27893833 PMCID: PMC5125581 DOI: 10.1371/journal.pone.0166062] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/20/2016] [Accepted: 10/21/2016] [Indexed: 11/19/2022] Open
Abstract
Agricultural production can be limited by low phosphorus (P) availability, with soil P being constrained by sorption and precipitation reactions making it less available for plant uptake. There are strong links between carbon (C) and nitrogen (N) availability and P cycling within soil P pools, with microorganisms being an integral component of soil P cycling mediating the availability of P to plants. Here we tested a conceptual model that proposes (i) the addition of readily-available organic substrates would increase the size of the microbial biomass thus exhausting the pool of easily-available P and (ii) this would cause the microbial biomass to access P from more recalcitrant pools. In this model it is hypothesised that the size of the microbial population is regulating access to less available P rather than the diversity of organisms contained within this biomass. To test this hypothesis we added mixtures of simple organic compounds that reflect typical root exudates at different C:N ratios to a soil microcosm experiment and assessed changes in soil P pools, microbial biomass and bacterial diversity measures. We report that low C:N ratio (C:N = 12.5:1) artificial root exudates increased the size of the microbial biomass while high C:N ratio (C:N = 50:1) artificial root exudates did not result in a similar increase in microbial biomass. Interestingly, addition of the root exudates did not alter bacterial diversity (measured via univariate diversity indices) but did alter bacterial community structure. Where C, N and P supply was sufficient to support plant growth the increase observed in microbial biomass occurred with a concurrent increase in plant yield.
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Affiliation(s)
- Pu Shen
- Soil Biology and Molecular Ecology Group, School of Earth and Environment, Faculty of Science, The University of Western Australia, Crawley, Perth, Western Australia, Australia
- National Engineering Laboratory for Improving Quality of Arable Land, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, P. R. China
| | - Daniel Vaughan Murphy
- Soil Biology and Molecular Ecology Group, School of Earth and Environment, Faculty of Science, The University of Western Australia, Crawley, Perth, Western Australia, Australia
| | - Suman J. George
- Soil Biology and Molecular Ecology Group, School of Earth and Environment, Faculty of Science, The University of Western Australia, Crawley, Perth, Western Australia, Australia
| | - Hazel Lapis-Gaza
- Soil Biology and Molecular Ecology Group, School of Earth and Environment, Faculty of Science, The University of Western Australia, Crawley, Perth, Western Australia, Australia
| | - Minggang Xu
- National Engineering Laboratory for Improving Quality of Arable Land, Institute of Agricultural Resources and Regional Planning, Chinese Academy of Agricultural Sciences, P. R. China
| | - Deirdre Bridget Gleeson
- Soil Biology and Molecular Ecology Group, School of Earth and Environment, Faculty of Science, The University of Western Australia, Crawley, Perth, Western Australia, Australia
- * E-mail:
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Wang Y, Krogstad T, Clarke JL, Hallama M, Øgaard AF, Eich-Greatorex S, Kandeler E, Clarke N. Rhizosphere Organic Anions Play a Minor Role in Improving Crop Species' Ability to Take Up Residual Phosphorus (P) in Agricultural Soils Low in P Availability. FRONTIERS IN PLANT SCIENCE 2016; 7:1664. [PMID: 27872635 PMCID: PMC5097927 DOI: 10.3389/fpls.2016.01664] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/29/2016] [Accepted: 10/21/2016] [Indexed: 05/22/2023]
Abstract
Many arable lands have accumulated large reserves of residual phosphorus (P) and a relatively large proportion of soil P is less available for uptake by plants. Root released organic anions are widely documented as a key physiological strategy to enhance P availability, while limited information has been generated on the contribution of rhizosphere organic anions to P utilization by crops grown in agricultural soils that are low in available P and high in extractable Ca, Al, and Fe. We studied the role of rhizosphere organic anions in P uptake from residual P in four common crops Triticum aestivum, Avena sativa, Solanum tuberosum, and Brassica napus in low- and high-P availability agricultural soils from long-term fertilization field trials in a mini-rhizotron experiment with four replications. Malate was generally the dominant organic anion. More rhizosphere citrate was detected in low P soils than in high P soil. B. napus showed 74-103% increase of malate in low P loam, compared with clay loam. A. sativa had the greatest rhizosphere citrate concentration in all soils (5.3-15.2 μmol g-1 root DW). A. sativa also showed the highest level of root colonization by arbuscular mycorrhizal fungi (AMF; 36 and 40%), the greatest root mass ratio (0.51 and 0.66) in the low-P clay loam and loam respectively, and the greatest total P uptake (5.92 mg P/mini-rhizotron) in the low-P loam. B. napus had 15-44% more rhizosphere acid phosphatase (APase) activity, ~0.1-0.4 units lower rhizosphere pH than other species, the greatest increase in rhizosphere water-soluble P in the low-P soils, and the greatest total P uptake in the low-P clay loam. Shoot P content was mainly explained by rhizosphere APase activity, water-soluble P and pH within low P soils across species. Within species, P uptake was mainly linked to rhizosphere water soluble P, APase, and pH in low P soils. The effects of rhizosphere organic anions varied among species and they appeared to play minor roles in improving P availability and uptake.
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Affiliation(s)
- Yanliang Wang
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
- Department of Environmental Sciences, Norwegian University of Life SciencesÅs, Norway
| | - Tore Krogstad
- Department of Environmental Sciences, Norwegian University of Life SciencesÅs, Norway
| | - Jihong L. Clarke
- Division of Biotechnology and Plant Health, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | - Moritz Hallama
- Soil Biology Department, Institute of Soil Science and Land Evaluation, University of HohenheimStuttgart, Germany
| | - Anne F. Øgaard
- Division of Environment and Natural Resources, Norwegian Institute of Bioeconomy ResearchÅs, Norway
| | | | - Ellen Kandeler
- Soil Biology Department, Institute of Soil Science and Land Evaluation, University of HohenheimStuttgart, Germany
| | - Nicholas Clarke
- Division of Environment and Natural Resources, Norwegian Institute of Bioeconomy ResearchÅs, Norway
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Menezes-Blackburn D, Paredes C, Zhang H, Giles CD, Darch T, Stutter M, George TS, Shand C, Lumsdon D, Cooper P, Wendler R, Brown L, Blackwell M, Wearing C, Haygarth PM. Organic Acids Regulation of Chemical-Microbial Phosphorus Transformations in Soils. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2016; 50:11521-11531. [PMID: 27700099 DOI: 10.1021/acs.est.6b03017] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/26/2023]
Abstract
We have used an integrated approach to study the mobility of inorganic phosphorus (P) from soil solid phase as well as the microbial biomass P and respiration at increasing doses of citric and oxalic acid in two different soils with contrasting agronomic P status. Citric or oxalic acids significantly increased soil solution P concentrations for doses over 2 mmol kg-1. However, low organic acid doses (<2 mmol kg-1) were associated with a steep increase in microbial biomass P, which was not seen for higher doses. In both soils, treatment with the tribasic citric acid led to a greater increase in soil solution P than the dibasic oxalic acid, likely due to the rapid degrading of oxalic acids in soils. After equilibration of soils with citric or oxalic acids, the adsorbed-to-solution distribution coefficient (Kd) and desorption rate constants (k-1) decreased whereas an increase in the response time of solution P equilibration (Tc) was observed. The extent of this effect was shown to be both soil and organic acid specific. Our results illustrate the critical thresholds of organic acid concentration necessary to mobilize sorbed and precipitated P, bringing new insight on how the exudation of organic acids regulate chemical-microbial soil phosphorus transformations.
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Affiliation(s)
| | - Cecilia Paredes
- Scientific and Technological Bioresource Nucleus (BIOREN), Universidad de La Frontera , Temuco, Chile
| | - Hao Zhang
- Lancaster University, Lancaster Environment Centre , Lancaster, LA1 4YQ, U.K
| | - Courtney D Giles
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Tegan Darch
- Rothamsted Research, North Wyke, Okehampton, Devon, EX20 2SB, U.K
| | - Marc Stutter
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Timothy S George
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Charles Shand
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - David Lumsdon
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Patricia Cooper
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Renate Wendler
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Lawrie Brown
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Martin Blackwell
- James Hutton Institute, The James Hutton Institute , Aberdeen, AB15 8QH and Dundee, DD2 5DA, Scotland, U.K
| | - Catherine Wearing
- Lancaster University, Lancaster Environment Centre , Lancaster, LA1 4YQ, U.K
| | - Philip M Haygarth
- Lancaster University, Lancaster Environment Centre , Lancaster, LA1 4YQ, U.K
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Rao IM, Miles JW, Beebe SE, Horst WJ. Root adaptations to soils with low fertility and aluminium toxicity. ANNALS OF BOTANY 2016; 118:593-605. [PMID: 27255099 PMCID: PMC5055624 DOI: 10.1093/aob/mcw073] [Citation(s) in RCA: 34] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/17/2015] [Revised: 01/18/2016] [Accepted: 03/01/2016] [Indexed: 05/21/2023]
Abstract
Background Plants depend on their root systems to acquire the water and nutrients necessary for their survival in nature, and for their yield and nutritional quality in agriculture. Root systems are complex and a variety of root phenes have been identified as contributors to adaptation to soils with low fertility and aluminium (Al) toxicity. Phenotypic characterization of root adaptations to infertile soils is enabling plant breeders to develop improved cultivars that not only yield more, but also contribute to yield stability and nutritional security in the face of climate variability. Scope In this review the adaptive responses of root systems to soils with low fertility and Al toxicity are described. After a brief introduction, the purpose and focus of the review are outlined. This is followed by a description of the adaptive responses of roots to low supply of mineral nutrients [with an emphasis on low availability of nitrogen (N) and phosphorus (P) and on toxic levels of Al]. We describe progress in developing germplasm adapted to soils with low fertility or Al toxicity using selected examples from ongoing breeding programmes on food (maize, common bean) and forage/feed (Brachiaria spp.) crops. A number of root architectural, morphological, anatomical and metabolic phenes contribute to the superior performance and yield on soils with low fertility and Al toxicity. Major advances have been made in identifying root phenes in improving adaptation to low N (maize), low P (common bean) or high Al [maize, common bean, species and hybrids of brachiariagrass, bulbous canarygrass (Phalaris aquatica) and lucerne (Medicago sativa)]. Conclusions Advanced root phenotyping tools will allow dissection of root responses into specific root phenes that will aid both conventional and molecular breeders to develop superior cultivars. These new cultivars will play a key role in sustainable intensification of crop-livestock systems, particularly in smallholder systems of the tropics. Development of these new cultivars adapted to soils with low fertility and Al toxicity is needed to improve global food and nutritional security and environmental sustainability.
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Affiliation(s)
- Idupulapati M. Rao
- Centro Internacional de Agricultura Tropical (CIAT), A. A. 6713, Cali, Colombia and
| | - John W. Miles
- Centro Internacional de Agricultura Tropical (CIAT), A. A. 6713, Cali, Colombia and
| | - Stephen E. Beebe
- Centro Internacional de Agricultura Tropical (CIAT), A. A. 6713, Cali, Colombia and
| | - Walter J. Horst
- Leibniz University of Hannover, Herrenhaeuser Str. 2, D-30419 Hannover, Germany
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Aguilera JG, Minozzo JAD, Barichello D, Fogaça CM, da Silva JP, Consoli L, Pereira JF. Alleles of organic acid transporter genes are highly correlated with wheat resistance to acidic soil in field conditions. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2016; 129:1317-1331. [PMID: 27008477 DOI: 10.1007/s00122-016-2705-3] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2015] [Accepted: 03/06/2016] [Indexed: 06/05/2023]
Abstract
TaALMT1 and TaMATE1B promoter alleles are highly correlated with wheat growth in acidic soil with a high concentration of toxic aluminium. The aluminium (Al(3+)) resistance of 338 wheat genotypes with different geographic origins was correlated with morphological traits and TaALMT1 and TaMATE1B alleles. Both of these genes encode malate and citrate transporters associated with Al(3+) resistance mechanisms in wheat. Based on comparisons with the sensitive and resistant controls, the relative root growth was evaluated in hydroponic experiments and the plant performance was visually accessed in the field. The correlation between Al(3+) tolerance in the hydroponic and field tests was moderate (r = 0.56, P < 0.001). Higher selection pressure was observed in the field because a smaller number of genotypes was classified as resistant. The combination between the six TaALMT1 alleles and the two TaMATE1B promoters allowed the identification of 11 haplotypes that showed a high (r = 0.71, P < 0.001) correlation with Al(3+) resistance in the field, with the TaALMT1 alleles accounting for most of the correlation. The Brazilian wheat genotypes presented the best performance in soil, including eight cultivars with promoters usually associated with Al(3+) resistance and another six genotypes classified as moderately resistant but containing alleles usually associated with Al(3+) sensitivity. Although an increase in favourable alleles was observed over the past few decades, the average Al(3+) resistance in the field was not significantly different from that of older cultivars. The ease identification of the TaALMT1 and TaMATE1B alleles and their higher association with Al(3+) resistance along with the best genotypes identified here may be used for wheat-breeding programmes interested in increasing wheat Al(3+) resistance.
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Affiliation(s)
- Jorge G Aguilera
- Embrapa Trigo, Rodovia BR 285 km 294, Passo Fundo, RS, 99050-970, Brazil
| | - João A D Minozzo
- Embrapa Trigo, Rodovia BR 285 km 294, Passo Fundo, RS, 99050-970, Brazil
- Universidade de Passo Fundo, Rodovia BR 285, Passo Fundo, RS, 99052-900, Brazil
| | - Diliane Barichello
- Embrapa Trigo, Rodovia BR 285 km 294, Passo Fundo, RS, 99050-970, Brazil
- Instituto Agronômico do Paraná, Rodovia Celso Garcia Cid km 375, Londrina, PR, 86047-902, Brazil
| | - Claúdia M Fogaça
- Embrapa Trigo, Rodovia BR 285 km 294, Passo Fundo, RS, 99050-970, Brazil
- Fundação Estadual de Pesquisa Agropecuária, RSC 470 km 170, Veranópolis, RS, 95330-000, Brazil
| | | | - Luciano Consoli
- Embrapa Trigo, Rodovia BR 285 km 294, Passo Fundo, RS, 99050-970, Brazil
| | - Jorge F Pereira
- Embrapa Trigo, Rodovia BR 285 km 294, Passo Fundo, RS, 99050-970, Brazil
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Plant-Microbiota Interactions as a Driver of the Mineral Turnover in the Rhizosphere. ADVANCES IN APPLIED MICROBIOLOGY 2016; 95:1-67. [PMID: 27261781 DOI: 10.1016/bs.aambs.2016.03.001] [Citation(s) in RCA: 69] [Impact Index Per Article: 8.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
A major challenge facing agriculture in the 21st century is the need to increase the productivity of cultivated land while reducing the environmentally harmful consequences of mineral fertilization. The microorganisms thriving in association and interacting with plant roots, the plant microbiota, represent a potential resource of plant probiotic function, capable of conjugating crop productivity with sustainable management in agroecosystems. However, a limited knowledge of the organismal interactions occurring at the root-soil interface is currently hampering the development and use of beneficial plant-microbiota interactions in agriculture. Therefore, a comprehensive understanding of the recruitment cues of the plant microbiota and the molecular basis of nutrient turnover in the rhizosphere will be required to move toward efficient and sustainable crop nutrition. In this chapter, we will discuss recent insights into plant-microbiota interactions at the root-soil interface, illustrate the processes driving mineral dynamics in soil, and propose experimental avenues to further integrate the metabolic potential of the plant microbiota into crop management and breeding strategies for sustainable agricultural production.
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Talboys PJ, Heppell J, Roose T, Healey JR, Jones DL, Withers PJA. Struvite: a slow-release fertiliser for sustainable phosphorus management? PLANT AND SOIL 2016; 401:109-123. [PMID: 27429478 PMCID: PMC4923718 DOI: 10.1007/s11104-015-2747-3] [Citation(s) in RCA: 89] [Impact Index Per Article: 11.1] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/03/2015] [Accepted: 11/16/2015] [Indexed: 05/03/2023]
Abstract
BACKGROUND AND AIM Recycled sources of phosphorus (P), such as struvite extracted from wastewater, have potential to substitute for more soluble manufactured fertilisers and help reduce the long-term threat to food security from dwindling finite reserves of phosphate rock (PR). This study aimed to determine whether struvite could be a component of a sustainable P fertiliser management strategy for arable crops. METHODS A combination of laboratory experiments, pot trials and mathematical modelling of the root system examined the P release properties of commercial fertiliser-grade struvite and patterns of P uptake from a low-P sandy soil by two different crop types, in comparison to more soluble inorganic P fertilisers (di-ammonium phosphate (DAP) and triple super phosphate (TSP)). RESULTS Struvite had greatly enhanced solubility in the presence of organic acid anions; buckwheat, which exudes a high level of organic acids, was more effective at mobilising struvite P than the low level exuder, spring wheat. Struvite granules placed with the seed did not provide the same rate of P supply as placed DAP granules for early growth of spring wheat, but gave equivalent rates of P uptake, yield and apparent fertiliser recovery at harvest, even though only 26 % of struvite granules completely dissolved. Fertiliser mixes containing struvite and DAP applied to spring wheat have potential to provide both optimal early and late season P uptake and improve overall P use efficiency. CONCLUSIONS We conclude that the potential resource savings and potential efficiency benefits of utilising a recycled slow release fertiliser like struvite offers a more sustainable alternative to only using conventional, high solubility, PR-based fertilisers.
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Affiliation(s)
- Peter J. Talboys
- />School of Environment, Natural Resources and Geography, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
| | - James Heppell
- />Institute for Complex Systems Simulation, University of Southampton, Southampton, SO17 1BJ UK
| | - Tiina Roose
- />Faculty of Engineering and the Environment, University of Southampton, Southampton, SO17 1BJ UK
| | - John R. Healey
- />School of Environment, Natural Resources and Geography, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
| | - Davey L. Jones
- />School of Environment, Natural Resources and Geography, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
| | - Paul J. A Withers
- />School of Environment, Natural Resources and Geography, Deiniol Road, Bangor, Gwynedd LL57 2UW UK
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Ryan PR, Liao M, Delhaize E, Rebetzke GJ, Weligama C, Spielmeyer W, James RA. Early vigour improves phosphate uptake in wheat. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:7089-100. [PMID: 26320241 PMCID: PMC4765783 DOI: 10.1093/jxb/erv403] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/21/2023]
Abstract
Quantitative trait loci (QTLs) for shoot biomass were identified in wheat grown on a soil high in total phosphorus (P) but low in plant-available P. The two populations screened included recombinant inbred lines (RILs) from Chuan-Mai 18/Vigour 18 and doubled-haploid lines from Kukri/Janz. Glasshouse-grown plants were harvested at the five-leaf stage. Seven QTLs for shoot biomass were identified in the RILs, with the largest on chromosome 7A accounting for 7.4% of the phenotypic variance. RILs from the upper tail had larger embryos than RILs from the lower tail. Tail lines were then grown in non-limiting P and the results indicated that early vigour and the capacity to access P contributed to the initial distribution. The influence of early vigour on P nutrition was examined further with advanced vigour lines (AVLs). The AVLs accumulated more shoot biomass, maintained lower shoot P concentrations, and showed greater P-acquisition efficiency than Vigour 18. Nine QTLs for shoot biomass were identified in the Kukri/Janz population. Two on chromosomes 4B and 4D accounted for 24.8% of the variance. Candidates underlying these QTLs are the Rht genes. We confirmed the influence of these genes using near-isogenic lines with different Rht alleles. The dwarf and semi-dwarf alleles affected shoot and root biomass at high and low P but not the efficiency of P acquisition. We conclude that early vigour contributed to the distributions in both populations. Early vigour can increase plant growth at suboptimal P and some sources can also improve the efficiency of P acquisition.
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Affiliation(s)
- Peter R Ryan
- CSIRO Agriculture, GPO Box 1600, Canberra ACT 2601, Australia
| | - Mingtan Liao
- CSIRO Agriculture, GPO Box 1600, Canberra ACT 2601, Australia
| | | | | | | | | | - Richard A James
- CSIRO Agriculture, GPO Box 1600, Canberra ACT 2601, Australia
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Lambers H, Finnegan PM, Jost R, Plaxton WC, Shane MW, Stitt M. Phosphorus nutrition in Proteaceae and beyond. NATURE PLANTS 2015; 1:15109. [PMID: 27250542 DOI: 10.1038/nplants.2015.109] [Citation(s) in RCA: 72] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Proteaceae in southwestern Australia have evolved on some of the most phosphorus-impoverished soils in the world. They exhibit a range of traits that allow them to both acquire and utilize phosphorus highly efficiently. This is in stark contrast with many model plants such as Arabidopsis thaliana and crop species, which evolved on soils where nitrogen is the major limiting nutrient. When exposed to low phosphorus availability, these plants typically exhibit phosphorus-starvation responses, whereas Proteaceae do not. This Review explores the traits that account for the very high efficiency of acquisition and use of phosphorus in Proteaceae, and explores which of these traits are promising for improving the phosphorus efficiency of crop plants.
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Affiliation(s)
- H Lambers
- School of Plant Biology and Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley (Perth), Western Australia 6009, Australia
| | - P M Finnegan
- School of Plant Biology and Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley (Perth), Western Australia 6009, Australia
| | - R Jost
- School of Plant Biology and Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley (Perth), Western Australia 6009, Australia
| | - W C Plaxton
- Department of Biology and Department of Biomedical and Molecular Sciences, Queen's University, Kingston, Ontario K7L 3N6, Canada
| | - M W Shane
- School of Plant Biology and Institute of Agriculture, The University of Western Australia, 35 Stirling Highway, Crawley (Perth), Western Australia 6009, Australia
| | - M Stitt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, D-14476 Potsdam-Golm, Germany
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Delhaize E, Rathjen TM, Cavanagh CR. The genetics of rhizosheath size in a multiparent mapping population of wheat. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:4527-36. [PMID: 25969556 PMCID: PMC4507764 DOI: 10.1093/jxb/erv223] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Rhizosheaths comprise soil that adheres to plant roots and, in some species, are indicative of root hair length. In this study, the genetics of rhizosheath size in wheat was investigated by screening the progeny of multiparent advanced generation intercrosses (MAGIC). Two MAGIC populations were screened for rhizosheath size using a high throughput method. One MAGIC population was developed from intercrosses between four parents (4-way) and the other from intercrosses between eight parents (8-way). Transgressive segregation for rhizosheath size was observed in both the 4-way and 8-way MAGIC populations. A quantitative trait loci (QTL) analysis of the 4-way population identified six major loci located on chromosomes 2B, 4D, 5A, 5B, 6A, and 7A together accounting for 42% of the variation in rhizosheath size. Rhizosheath size was strongly correlated with root hair length and was robust across different soil types in the absence of chemical constraints. Rhizosheath size in the MAGIC populations was a reliable surrogate for root hair length and, therefore, the QTL identified probably control root hair elongation. Members of the basic helix-loop-helix family of transcription factors have previously been identified to regulate root hair length in Arabidopsis and rice. Since several wheat members of the basic helix-loop-helix family of genes are located within or near the QTL, these genes are candidates for controlling the long root hair trait. The QTL for rhizosheath size identified in this study provides the opportunity to implement marker-assisted selection to increase root hair length for improved phosphate acquisition in wheat.
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Affiliation(s)
| | - Tina M Rathjen
- CSIRO Agriculture, GPO Box 1600, Canberra, ACT 2601, Australia
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Lynch JP, Wojciechowski T. Opportunities and challenges in the subsoil: pathways to deeper rooted crops. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2199-210. [PMID: 25582451 PMCID: PMC4986715 DOI: 10.1093/jxb/eru508] [Citation(s) in RCA: 138] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 11/04/2014] [Accepted: 11/28/2014] [Indexed: 05/18/2023]
Abstract
Greater exploitation of subsoil resources by annual crops would afford multiple benefits, including greater water and N acquisition in most agroecosystems, and greater sequestration of atmospheric C. Constraints to root growth in the subsoil include soil acidity (an edaphic stress complex consisting of toxic levels of Al, inadequate levels of P and Ca, and often toxic levels of Mn), soil compaction, hypoxia, and suboptimal temperature. Multiple root phenes under genetic control are associated with adaptation to these constraints, opening up the possibility of breeding annual crops with root traits improving subsoil exploration. Adaptation to Al toxicity, hypoxia, and P deficiency are intensively researched, adaptation to soil hardness and suboptimal temperature less so, and adaptations to Ca deficiency and Mn toxicity are poorly understood. The utility of specific phene states may vary among soil taxa and management scenarios, interactions which in general are poorly understood. These traits and issues merit research because of their potential value in developing more productive, sustainable, benign, and resilient agricultural systems.
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Affiliation(s)
- Jonathan P Lynch
- Department of Plant Science, The Pennsylvania State University, University Park, PA 16802, USA IBG2, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, Jülich D-52445, Germany
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Basile M, Unruh DK, Flores E, Johns A, Forbes TZ. Structural characterization of environmentally relevant ternary uranyl citrate complexes present in aqueous solutions and solid state materials. Dalton Trans 2015; 44:2597-605. [DOI: 10.1039/c4dt02442g] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Structural characterization of U(vi) : (Al(iii), Fe(iii)) : citrate complexes provides insight into the formation of polynuclear clusters present in environmentally-relevant aqueous solutions.
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Affiliation(s)
| | | | - Erin Flores
- Department of Chemistry
- University of Iowa
- Iowa City
- USA
| | - Adam Johns
- Department of Chemistry
- University of Iowa
- Iowa City
- USA
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