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For: Austin RS, Hiu S, Waese J, Ierullo M, Pasha A, Wang TT, Fan J, Foong C, Breit R, Desveaux D, Moses A, Provart NJ. New BAR tools for mining expression data and exploring Cis-elements in Arabidopsis thaliana. Plant J 2016;88:490-504. [PMID: 27401965 DOI: 10.1111/tpj.13261] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2016] [Revised: 06/23/2016] [Accepted: 07/01/2016] [Indexed: 05/21/2023]
Number Cited by Other Article(s)
1
Li T, Chen H, Ma N, Jiang D, Wu J, Zhang X, Li H, Su J, Chen P, Liu Q, Guan Y, Zhu X, Lin J, Zhang J, Wang Q, Guo H, Zhu F. Specificity landscapes of 40 R2R3-MYBs reveal how paralogs target different cis-elements by homodimeric binding. IMETA 2025;4:e70009. [PMID: 40236784 PMCID: PMC11995187 DOI: 10.1002/imt2.70009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/11/2024] [Revised: 02/11/2025] [Accepted: 02/17/2025] [Indexed: 04/17/2025]
2
Sullivan A, Lombardo M, Pasha A, Lau V, Zhuang J, Christendat A, Pereira B, Zhao T, Li Y, Wong R, Qureshi F, Provart N. 20 years of the Bio-Analytic Resource for Plant Biology. Nucleic Acids Res 2025;53:D1576-D1586. [PMID: 39441075 PMCID: PMC11701662 DOI: 10.1093/nar/gkae920] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/13/2024] [Revised: 09/19/2024] [Accepted: 10/07/2024] [Indexed: 10/25/2024]  Open
3
Kohli M, Bansal H, Aski M, Mishra GP, Shashidhar BR, Roy A, Gupta S, Sinha SK, Mishra BK, Kumari N, Kumar A, Kumar RR, Nair RM, Dikshit HK. Genome-wide association mapping of biochemical traits and its correlation with MYMIV resistance in mungbean (Vigna radiata L. Wilczek). Sci Rep 2024;14:31805. [PMID: 39738266 PMCID: PMC11685830 DOI: 10.1038/s41598-024-82836-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2024] [Accepted: 12/09/2024] [Indexed: 01/01/2025]  Open
4
Koh E, Sunil RS, Lam HYI, Mutwil M. Confronting the data deluge: How artificial intelligence can be used in the study of plant stress. Comput Struct Biotechnol J 2024;23:3454-3466. [PMID: 39415960 PMCID: PMC11480249 DOI: 10.1016/j.csbj.2024.09.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 09/14/2024] [Accepted: 09/16/2024] [Indexed: 10/19/2024]  Open
5
Zhang R, Cui X, Zhao P. Rapidly Evolved Genes in Three Reaumuria Transcriptomes and Potential Roles of Pentatricopeptide Repeat Superfamily Proteins in Endangerment of R. trigyna. Int J Mol Sci 2024;25:11065. [PMID: 39456846 PMCID: PMC11508020 DOI: 10.3390/ijms252011065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 10/04/2024] [Accepted: 10/08/2024] [Indexed: 10/28/2024]  Open
6
Pandey A, Malik P, Kumar A, Kaur N, Saini DK, Gill RK, Kashyap S, Kaur S. Multi-GWAS reveals significant genomic regions for Mungbean yellow mosaic India virus resistance in urdbean (Vigna mungo (L.) across multiple environments. PLANT CELL REPORTS 2024;43:166. [PMID: 38862789 DOI: 10.1007/s00299-024-03257-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Accepted: 06/04/2024] [Indexed: 06/13/2024]
7
Shivaprasad KM, Aski M, Mishra GP, Sinha SK, Gupta S, Mishra DC, Singh AK, Singh A, Tripathi K, Kumar RR, Kumar A, Kumar S, Dikshit HK. Genome-wide discovery of InDels and validation of PCR-Based InDel markers for earliness in a RIL population and genotypes of lentil (Lens culinaris Medik.). PLoS One 2024;19:e0302870. [PMID: 38776345 PMCID: PMC11111061 DOI: 10.1371/journal.pone.0302870] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2023] [Accepted: 04/15/2024] [Indexed: 05/24/2024]  Open
8
Edet OU, Ubi BE, Ishii T. Genomic analysis of a spontaneous unifoliate mutant reveals gene candidates associated with compound leaf development in Vigna unguiculata [L] Walp. Sci Rep 2024;14:10654. [PMID: 38724579 PMCID: PMC11082238 DOI: 10.1038/s41598-024-61062-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2024] [Accepted: 04/30/2024] [Indexed: 05/12/2024]  Open
9
Kumari N, Mishra GP, Dikshit HK, Gupta S, Roy A, Sinha SK, Mishra DC, Das S, Kumar RR, Nair RM, Aski M. Identification of quantitative trait loci (QTLs) regulating leaf SPAD value and trichome density in mungbean (Vigna radiata L.) using genotyping-by-sequencing (GBS) approach. PeerJ 2024;12:e16722. [PMID: 38406271 PMCID: PMC10893866 DOI: 10.7717/peerj.16722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2023] [Accepted: 12/04/2023] [Indexed: 02/27/2024]  Open
10
Kohli M, Bansal H, Mishra GP, Dikshit HK, Reddappa SB, Roy A, Sinha SK, Shivaprasad K, Kumari N, Kumar A, Kumar RR, Nair RM, Aski M. Genome-wide association studies for earliness, MYMIV resistance, and other associated traits in mungbean (Vigna radiata L. Wilczek) using genotyping by sequencing approach. PeerJ 2024;12:e16653. [PMID: 38288464 PMCID: PMC10823994 DOI: 10.7717/peerj.16653] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/02/2023] [Accepted: 11/20/2023] [Indexed: 02/01/2024]  Open
11
Manjunatha PB, Aski MS, Mishra GP, Gupta S, Devate NB, Singh A, Bansal R, Kumar S, Nair RM, Dikshit HK. Genome-wide association studies for phenological and agronomic traits in mungbean (Vigna radiata L. Wilczek). FRONTIERS IN PLANT SCIENCE 2023;14:1209288. [PMID: 37810385 PMCID: PMC10558178 DOI: 10.3389/fpls.2023.1209288] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Accepted: 08/25/2023] [Indexed: 10/10/2023]
12
Adhikari PB, Zhu S, Liu X, Huang C, Xie L, Wu X, He J, Mitsuda N, Peters B, Brownfield L, Nagawa S, Kasahara RD. Discovery of a cis-regulatory element SaeM involved in dynamic regulation of synergid-specific MYB98. FRONTIERS IN PLANT SCIENCE 2023;14:1177058. [PMID: 37223808 PMCID: PMC10200956 DOI: 10.3389/fpls.2023.1177058] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2023] [Accepted: 04/10/2023] [Indexed: 05/25/2023]
13
Gouesbet G. Deciphering Macromolecular Interactions Involved in Abiotic Stress Signaling: A Review of Bioinformatics Analysis. Methods Mol Biol 2023;2642:257-294. [PMID: 36944884 DOI: 10.1007/978-1-0716-3044-0_15] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
14
Cantó-Pastor A, Mason GA, Brady SM, Provart NJ. Arabidopsis bioinformatics: tools and strategies. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2021;108:1585-1596. [PMID: 34695270 DOI: 10.1111/tpj.15547] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 10/01/2021] [Accepted: 10/19/2021] [Indexed: 06/13/2023]
15
Zogopoulos VL, Saxami G, Malatras A, Angelopoulou A, Jen CH, Duddy WJ, Daras G, Hatzopoulos P, Westhead DR, Michalopoulos I. Arabidopsis Coexpression Tool: a tool for gene coexpression analysis in Arabidopsis thaliana. iScience 2021;24:102848. [PMID: 34381973 PMCID: PMC8334378 DOI: 10.1016/j.isci.2021.102848] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2021] [Revised: 06/23/2021] [Accepted: 07/08/2021] [Indexed: 02/08/2023]  Open
16
Dorone Y, Boeynaems S, Flores E, Jin B, Hateley S, Bossi F, Lazarus E, Pennington JG, Michiels E, De Decker M, Vints K, Baatsen P, Bassel GW, Otegui MS, Holehouse AS, Exposito-Alonso M, Sukenik S, Gitler AD, Rhee SY. A prion-like protein regulator of seed germination undergoes hydration-dependent phase separation. Cell 2021;184:4284-4298.e27. [PMID: 34233164 PMCID: PMC8513799 DOI: 10.1016/j.cell.2021.06.009] [Citation(s) in RCA: 105] [Impact Index Per Article: 26.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2020] [Revised: 03/22/2021] [Accepted: 06/04/2021] [Indexed: 12/22/2022]
17
Azad AKM, Alyami SA. Discovering novel cancer bio-markers in acquired lapatinib resistance using Bayesian methods. Brief Bioinform 2021;22:6226686. [PMID: 33857297 DOI: 10.1093/bib/bbab137] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2020] [Revised: 02/20/2021] [Accepted: 03/23/2021] [Indexed: 11/12/2022]  Open
18
Chen C, Galon Y, Rahmati Ishka M, Malihi S, Shimanovsky V, Twito S, Rath A, Vatamaniuk OK, Miller G. ASCORBATE PEROXIDASE6 delays the onset of age-dependent leaf senescence. PLANT PHYSIOLOGY 2021;185:441-456. [PMID: 33580795 PMCID: PMC8133542 DOI: 10.1093/plphys/kiaa031] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 11/04/2020] [Indexed: 05/11/2023]
19
Alex Mason G, Cantó-Pastor A, Brady SM, Provart NJ. Bioinformatic Tools in Arabidopsis Research. Methods Mol Biol 2021;2200:25-89. [PMID: 33175372 DOI: 10.1007/978-1-0716-0880-7_2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/23/2023]
20
Malik A, Gul A, Amir R, Munir F, Babar MM, Bakhtiar SM, Hayat MQ, Paracha RZ, Khalid Z, Alipour H. Classification and Computational Analysis of Arabidopsis thaliana Sperm Cell-Specific F-Box Protein Gene 3p.AtFBP113. Front Genet 2020;11:609668. [PMID: 33381153 PMCID: PMC7767997 DOI: 10.3389/fgene.2020.609668] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2020] [Accepted: 11/16/2020] [Indexed: 11/25/2022]  Open
21
Reddy VRP, Das S, Dikshit HK, Mishra GP, Aski M, Meena SK, Singh A, Pandey R, Singh MP, Tripathi K, Gore PG, Priti, Bhagat TK, Kumar S, Nair R, Sharma TR. Genome-Wide Association Analysis for Phosphorus Use Efficiency Traits in Mungbean (Vigna radiata L. Wilczek) Using Genotyping by Sequencing Approach. FRONTIERS IN PLANT SCIENCE 2020;11:537766. [PMID: 33193476 PMCID: PMC7658405 DOI: 10.3389/fpls.2020.537766] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2020] [Accepted: 09/18/2020] [Indexed: 10/10/2023]
22
Lei L, Stevens DM, Coaker G. Phosphorylation of the Pseudomonas Effector AvrPtoB by Arabidopsis SnRK2.8 Is Required for Bacterial Virulence. MOLECULAR PLANT 2020;13:1513-1522. [PMID: 32889173 PMCID: PMC7808569 DOI: 10.1016/j.molp.2020.08.018] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2020] [Revised: 08/20/2020] [Accepted: 08/30/2020] [Indexed: 05/03/2023]
23
Ko DK, Brandizzi F. Network-based approaches for understanding gene regulation and function in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;104:302-317. [PMID: 32717108 PMCID: PMC8922287 DOI: 10.1111/tpj.14940] [Citation(s) in RCA: 37] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2020] [Accepted: 07/14/2020] [Indexed: 05/03/2023]
24
Kartal Ö, Schmid MW, Grossniklaus U. Cell type-specific genome scans of DNA methylation divergence indicate an important role for transposable elements. Genome Biol 2020;21:172. [PMID: 32660534 PMCID: PMC7359245 DOI: 10.1186/s13059-020-02068-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Accepted: 06/10/2020] [Indexed: 01/01/2023]  Open
25
To A, Joubès J, Thueux J, Kazaz S, Lepiniec L, Baud S. AtMYB92 enhances fatty acid synthesis and suberin deposition in leaves of Nicotiana benthamiana. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020;103:660-676. [PMID: 32246506 DOI: 10.1111/tpj.14759] [Citation(s) in RCA: 45] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 02/02/2020] [Accepted: 03/18/2020] [Indexed: 05/11/2023]
26
Song Q, Lee J, Akter S, Rogers M, Grene R, Li S. Prediction of condition-specific regulatory genes using machine learning. Nucleic Acids Res 2020;48:e62. [PMID: 32329779 PMCID: PMC7293043 DOI: 10.1093/nar/gkaa264] [Citation(s) in RCA: 30] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2019] [Revised: 02/19/2020] [Accepted: 04/20/2020] [Indexed: 12/31/2022]  Open
27
Cabada Gomez DA, Chavez MI, Cobos AN, Gross RJ, Yescas JA, Balogh MA, Indriolo E. COPI complex isoforms are required for the early acceptance of compatible pollen grains in Arabidopsis thaliana. PLANT REPRODUCTION 2020;33:97-110. [PMID: 32277349 DOI: 10.1007/s00497-020-00387-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/20/2018] [Accepted: 03/11/2020] [Indexed: 05/04/2023]
28
Barco B, Clay NK. Hierarchical and Dynamic Regulation of Defense-Responsive Specialized Metabolism by WRKY and MYB Transcription Factors. FRONTIERS IN PLANT SCIENCE 2020;10:1775. [PMID: 32082343 PMCID: PMC7005594 DOI: 10.3389/fpls.2019.01775] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2019] [Accepted: 12/19/2019] [Indexed: 05/07/2023]
29
Barker R, Lombardino J, Rasmussen K, Gilroy S. Test of Arabidopsis Space Transcriptome: A Discovery Environment to Explore Multiple Plant Biology Spaceflight Experiments. FRONTIERS IN PLANT SCIENCE 2020;11:147. [PMID: 32265943 PMCID: PMC7076552 DOI: 10.3389/fpls.2020.00147] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 01/30/2020] [Indexed: 05/04/2023]
30
In-Silico Evaluation of a New Gene From Wheat Reveals the Divergent Evolution of the CAP160 Homologous Genes Into Monocots. J Mol Evol 2019;88:151-163. [PMID: 31820048 DOI: 10.1007/s00239-019-09920-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2019] [Accepted: 11/19/2019] [Indexed: 10/25/2022]
31
Inference of plant gene regulatory networks using data-driven methods: A practical overview. BIOCHIMICA ET BIOPHYSICA ACTA-GENE REGULATORY MECHANISMS 2019;1863:194447. [PMID: 31678628 DOI: 10.1016/j.bbagrm.2019.194447] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2019] [Revised: 10/08/2019] [Accepted: 10/31/2019] [Indexed: 11/20/2022]
32
Genome-Wide Computational Identification of Biologically Significant Cis-Regulatory Elements and Associated Transcription Factors from Rice. PLANTS 2019;8:plants8110441. [PMID: 31652796 PMCID: PMC6918188 DOI: 10.3390/plants8110441] [Citation(s) in RCA: 23] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2019] [Revised: 10/17/2019] [Accepted: 10/21/2019] [Indexed: 01/12/2023]
33
Kulkarni SR, Vaneechoutte D, Van de Velde J, Vandepoele K. TF2Network: predicting transcription factor regulators and gene regulatory networks in Arabidopsis using publicly available binding site information. Nucleic Acids Res 2019;46:e31. [PMID: 29272447 PMCID: PMC5888541 DOI: 10.1093/nar/gkx1279] [Citation(s) in RCA: 81] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2017] [Accepted: 12/18/2017] [Indexed: 12/16/2022]  Open
34
Lai X, Stigliani A, Vachon G, Carles C, Smaczniak C, Zubieta C, Kaufmann K, Parcy F. Building Transcription Factor Binding Site Models to Understand Gene Regulation in Plants. MOLECULAR PLANT 2019;12:743-763. [PMID: 30447332 DOI: 10.1016/j.molp.2018.10.010] [Citation(s) in RCA: 67] [Impact Index Per Article: 11.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/29/2018] [Revised: 09/20/2018] [Accepted: 10/30/2018] [Indexed: 06/09/2023]
35
Yoshida T, Anjos LD, Medeiros DB, Araújo WL, Fernie AR, Daloso DM. Insights into ABA-mediated regulation of guard cell primary metabolism revealed by systems biology approaches. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2018;146:37-49. [PMID: 30447225 DOI: 10.1016/j.pbiomolbio.2018.11.006] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2018] [Revised: 11/02/2018] [Accepted: 11/13/2018] [Indexed: 01/08/2023]
36
The Bio-Analytic Resource for Plant Biology. Methods Mol Biol 2018;1533:119-148. [PMID: 27987167 DOI: 10.1007/978-1-4939-6658-5_6] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
37
Cis and trans determinants of epigenetic silencing by Polycomb repressive complex 2 in Arabidopsis. Nat Genet 2017;49:1546-1552. [DOI: 10.1038/ng.3937] [Citation(s) in RCA: 150] [Impact Index Per Article: 18.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2017] [Accepted: 07/21/2017] [Indexed: 12/12/2022]
38
Hocking B, Conn SJ, Manohar M, Xu B, Athman A, Stancombe MA, Webb AR, Hirschi KD, Gilliham M. Heterodimerization of Arabidopsis calcium/proton exchangers contributes to regulation of guard cell dynamics and plant defense responses. JOURNAL OF EXPERIMENTAL BOTANY 2017;68:4171-4183. [PMID: 28645169 PMCID: PMC5853972 DOI: 10.1093/jxb/erx209] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2016] [Accepted: 06/02/2017] [Indexed: 05/19/2023]
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Becker MG, Walker PL, Pulgar-Vidal NC, Belmonte MF. SeqEnrich: A tool to predict transcription factor networks from co-expressed Arabidopsis and Brassica napus gene sets. PLoS One 2017;12:e0178256. [PMID: 28575075 PMCID: PMC5456048 DOI: 10.1371/journal.pone.0178256] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2017] [Accepted: 05/10/2017] [Indexed: 01/08/2023]  Open
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