Ecology. Valuing common species

Combining Satellite Tracking and Remote Sensing to Identify Activity Pattern and Habitat Selection of Coastal Shorebirds: A Case Study of Pied Avocets in Bohai Bay, China

In the context of intense interference from human activities and massive loss of natural wetlands in coastal zones, it is crucial to understand the behavioral ecology of shorebirds for formulating targeted conservation measures. Based on satellite tracking and remote sensing techniques, our research investigated the activity pattern and habitat selection characteristics of the Pied Avocet (Recurvirostra avosetta ) in Bohai Bay, China. The results showed that Pied Avocets are relatively flexible in habitat selection in Bohai Bay. There are obvious individual differences in their residence time (119-210 days) and activity range (core home range from 15.34 to 95.12 km2). Pied Avocets may only move around a fixed breeding site throughout the breeding season, or they may transfer to another location for a second breeding. The mariculture, salt pan, and industrial-mining land are the main components of the Pied Avocets' habitat, and the proportion of their area in the main and core home ranges is > 10%. The species prefers sparsely vegetated areas near coastlines and water bodies as habitats and has a certain tolerance for human disturbance. Our findings could provide specific management advice for alleviating human-bird conflicts in the highly developed coastal zones. The study on the activity pattern and habitat selection of the Pied Avocet offered technical and data support for shorebirds habitat protection.

Feathers, folklore, and eco-literacy: Stories ascribe cultural keystone status to avian scavengers in South Asian cities

We examined the cultural significance of commensal avian scavenger species-vultures, kites, and crows-and their exploitation of anthropogenic resources and sentiments within Delhi's urban landscapes. For this, we investigated the intrinsic values attributed to these birds by people, which are indicative of complex, rapidly urbanizing social-ecological systems. Semi-structured interviews revealed folk perceptions intertwined with socio-cultural narratives and traditions, shaped by observations of avian morphology, ecology, and behavior. Birds' nesting habits, habitats, home ranges, and foraging behaviors affected people's perceptions, while ecosystem services inspired zoomorphism and anthropomorphism via vernacular-nomenclature (e.g., chidiya collectively for songbirds, giddha for scavenging raptors). Culturally rooted perceptions, which informed ritual feeding practices and shaped prevalent attitudes toward commensal species, fostered mutual tolerance, and brought people into closer contact with urban biodiversity. Such physical and cultural proximity is a defining characteristic distinguishing tropical urban ecosystems from their Western counterparts. We also uncovered the web of social-technological influences on animal-related folk stories. The urbanization of perceptions in vulture extinction zones revealed shifts in social-ecological relationships with wildlife. It adds cultural dimensions to the currently appreciated keystone status of vultures, vital for their erstwhile coexistence at extremely high densities in South Asia. Urban transformations, technological advancements, and media exposure potentially reshaped human-animal interface, with media misinformation affecting personalized ecologies. Conflicts and health concerns arose from media narratives on garbage-consuming animals. Our findings offer insights to prevent severing of people and nature connections due to urbanization (e.g., technological applications can integrate scientific knowledge with biocultural narratives and folklore), promoting a new-age eco-literacy.

Designing cities for everyday nature

The motivations for incorporating nature into the design of cities have never been more compelling. Creating experiences with nature that occur every day (everyday nature) in cities could help reverse the fate of many threatened species and connect people with nature and living cultural traditions. However, this requires more than just urban greening; it involves ensuring daily doses of nature in a way that also supports nonhuman organisms. A major shift in the way nature is conceived of and is made part of the design of cities is required. Principles include reconsidering nature as a development opportunity rather than a constraint and eliminating offsetting of biodiversity site values. Processes include using biodiversity-sensitive design frameworks and establishing meaningful professional engagement among ecologists, planners, and designers. Challenges include design obstacles, conflicts between nature and people (e.g., safety, disease, and noise) that require careful management, and socioeconomic and political considerations (e.g., Global North vs. Global South). Research to interrogate the multiple benefits of nature in cities can complement experimental interventions, ultimately supporting better urban design and creating much more resiliently built environments for people and nature.

Accounting for functionality in the identification of global conservation priorities: promises and pitfalls

Whereas preventing species extinctions remains a central objective of conservation efforts, it must be complemented by the long-term preservation of functional ecosystems and of the benefits humans derive from them. Here, I review recent approaches that explicitly account for functionality in setting large-scale conservation priorities, discussing their promise while highlighting challenges and pitfalls. Crossing data on species' distributions and ecological traits has enabled the mapping of global patterns of functional diversity and functional rarity and the identification of species that stand out for their functional distinctiveness. However, the priorities identified through these general indices do not directly address ecosystem functionality, instead, they are methods for ensuring the representation of individual functional traits as intrinsically valuable biodiversity elements. Three other approaches integrate functionality into large-scale priorities by taking into account the specific context of each ecosystem, site or species: the International Union for Conservation of Nature's Red List of Ecosystems, Key Biodiversity Areas and the Green Status of Species. Currently at various stages of development, testing and implementation, these approaches are playing an increasingly important role in the definition, implementation and monitoring of global- and national-scale conservation strategies to ensure the long-term persistence of ecosystem functions and associated ecosystem services.This article is part of the discussion meeting issue 'Bending the curve towards nature recovery: building on Georgina Mace's legacy for a biodiverse future'.

Unveiling the ecological dominance of button mangrove (Conocarpus erectus L.) through microstructural and functional traits modifications across heterogenic environmental conditions

BACKGROUND

The button mangrove (Conocarpus erectus L.) is regarded as a peripheral species within mangrove communities. This particular species has the ability to thrive in regions that are arid or semiarid, where there is limited availability of nutrients. This study provides evidence of the ecological dominance of Conocarpus erectus across various habitats, highlighting its adaptability and success throughout the country of Pakistan. We collected twelve populations from four distinct ecological regions, including artificial forest plantations, agricultural fields, roadsides, and wastelands, offering a comprehensive assessment of C. erectus adaptability across diverse environmental contexts.

RESULTS

Forest plantation populations exhibited impressive shoot growth and moderate root lengths, with plants generally tall and well-weighted. Physiologically, they had moderate chlorophyll content and low carotenoid levels, with a balanced chlorophyll a/b ratio, indicating stable photosynthetic activity. Anatomically, these populations had thicker epidermal and cortical root layers but smaller vascular bundles and phloem regions. Stem and leaf structures were generally moderate in size, with thicker midribs and cortical layers in the leaves. Agricultural field populations showed robust shoot and root systems with balanced fresh and dry biomass. They exhibited high chlorophyll and carotenoid levels, indicating strong photosynthetic capacity. Root and stem anatomy revealed larger root areas, thicker cortex, and wide vascular bundles, reflecting enhanced structural development. Leaves from these populations had moderate midrib and cortical thickness, with larger stomatal areas, promoting efficient gas exchange. Roadside populations displayed deeper roots and reduced biomass production. These populations adapted to environmental stress through leaf expansion, with high leaf numbers and areas. Physiologically, populations had high chlorophyll content, with a high chlorophyll a/b ratio. Root and stem anatomy showed compact structures with smaller vascular bundles, indicating adaptation to harsher conditions. Leaf anatomy was moderate, with smaller vascular bundles and reduced water transport capacity. Wasteland populations exhibited poor growth and high shoot biomass despite small leaves. Physiologically, these populations had the highest total soluble protein and proline contents, reflecting stress adaptation. Anatomically, root and stem structures were variable, with some populations showing reduced cortical cell areas and smaller vascular bundles, indicating limited resource transport. Leaf structures had thicker lamina, thinner epidermal layers, and lower stomatal densities, reflecting adaptation to nutrient-poor soils.

CONCLUSION

This study reveals the adaptability and thriving potential of Conocarpus erectus across varied habitats, providing key insights into its resilience and survival strategies. Understanding these adaptive traits can support habitat restoration, conservation planning, and improve species management in diverse environmental conditions, especially in response to climate change and habitat degradation.

Rehabilitation outcomes of bird-building collision victims in the Northeastern United States

Building collisions are a leading threat to wild birds; however, only those that are found dead or fatally wounded are included in current mortality estimates, with injured or stunned birds largely assumed to survive long-term. Avian building collision victims are often brought to wildlife rehabilitators for care, with the hopes they can be released and resume their natural lives. We examined the wildlife rehabilitation records of over 3,100 building collisions with 152 different avian species collected across multiple seasons to identify patterns of survival and release among patients. The number of admissions varied by season; fall migration had the highest number of cases and winter had the least number of cases, and summer having the lowest release proportion and winter having the highest. The most common reported injury was head trauma and concussion. Our logistic and Poisson models found that mass had a strong positive effect on release probability, and the season of summer had a strong negative effect on release probability. Mass and winter had a strong positive effect on treatment time, and age and the seasons of fall and winter had a strong negative effect on treatment time in these models. Ultimately, about 60% of patients died in care, either by succumbing to their injuries or by euthanasia. Patients that were released remained in care for longer than patients that died. This study reports different data than carcass studies and views bird-building collisions from the perspective of surviving victims to explore longer-term effects of these collisions on mortality. Increased communication and collaboration between wildlife rehabilitators and conservation researchers is recommended to better understand building collisions and how to respond to this leading threat to wild birds. These findings, along with our estimate of delayed mortality, suggest that overall collision mortality estimates based on carcass collection far exceed one billion birds in the U.S. each year.

Rare and common species contribute disproportionately to alpine meadow community construction and functional variation

It is widely accepted that rare species are the first species to become extinct after human-induced disturbances. However, the functional importance of rare species still needs to be better understood, especially in alpine meadow communities with harsher habitats, where the extinction rate of rare species may be higher. This study established a 1.85 × 105 m2 permanent research sample plot on the eastern Tibetan Plateau. We investigated data from 162 plots at 6 different sampling scales in alpine meadows to determine the contribution of rare and common species to alpine meadow communities' structural and functional variability. The results showed that (1) Asteraceae (Compositae) was the dominant family in the surveyed localities. The trends of species diversity indices were the same, and all of them increased with the increase of sampling scale, and the plant community showed apparent scale effects. (2) The community construction of rare species at small scales with high occupancy transitioned from neutral processes to ecological niche processes, while the community construction of common species at different sampling scales was all dominated by ecological niche processes. (3) The trait values of rare species at different sampling scales were different from those of common species, and their distribution in FEs (functional entities) was also different, indicating that they contributed differently to the ecological functions of the communities. Rare species with lower abundance in the surveyed communities had a higher proportion of FEs, indicating that rare species had a more significant proportion of contribution to FEs. The functional redundancy (FR) of rare species was lower than that of common species, and the functional vulnerability (FV) was higher than that of common species. Therefore, the loss of rare species is more likely to cause the loss of community ecological functions, affecting the function and resilience of alpine meadow ecosystems.

Chronic industrial perturbation and seasonal change induces shift in the bacterial community from gammaproteobacteria to betaproteobacteria having catabolic potential for aromatic compounds at Amlakhadi canal

Escalating proportions of industrially contaminated sites are one of the major catastrophes faced at the present time due to the industrial revolution. The difficulties associated with culturing the microbes, has been circumvent by the direct use of metagenomic analysis of various complex niches. In this study, a metagenomic approach using next generation sequencing technologies was applied to exemplify the taxonomic abundance and metabolic potential of the microbial community residing in Amlakhadi canal, Ankleshwar at two different seasons. All the metagenomes revealed a predominance of Proteobacteria phylum. However, difference was observed within class level where Gammaproteobacteria was relatively high in polluted metagenome in Summer while in Monsoon the abundance shifted to Betaproteobacteria. Similarly, significant statistical differences were obtained while comparing the genera amongst contaminated sites where Serratia, Achromobacter, Stenotrophomonas and Pseudomonas were abundant in summer season and the dominance changed to Thiobacillus, Thauera, Acidovorax, Nitrosomonas, Sulfuricurvum, Novosphingobium, Hyphomonas and Geobacter in monsoon. Further upon functional characterization, the microbiomes revealed the diverse survival mechanisms, in response to the prevailing ecological conditions (such as degradation of aromatic compounds, heavy metal resistance, oxidative stress responses and multidrug resistance efflux pumps, etc.). The results have important implications in understanding and predicting the impacts of human-induced activities on microbial communities inhabiting natural niche and their responses in coping with the fluctuating pollution load.

Drivers of the changing abundance of European birds at two spatial scales

Detecting biodiversity change and identifying its causes is challenging because biodiversity is multifaceted and temporal data often contain bias. Here, we model temporal change in species' abundance and biomass by using extensive data describing the population sizes and trends of native breeding birds in the United Kingdom (UK) and the European Union (EU). In addition, we explore how species' population trends vary with species' traits. We demonstrate significant change in the bird assemblages of the UK and EU, with substantial reductions in overall bird abundance and losses concentrated in a relatively small number of abundant and smaller sized species. By contrast, rarer and larger birds had generally fared better. Simultaneously, overall avian biomass had increased very slightly in the UK and was stable in the EU, indicating a change in community structure. Abundance trends across species were positively correlated with species' body mass and with trends in climate suitability, and varied with species' abundance, migration strategy and niche associations linked to diet. Our work highlights how changes in biodiversity cannot be captured easily by a single number; care is required when measuring and interpreting biodiversity change given that different metrics can provide very different insights. This article is part of the theme issue 'Detecting and attributing the causes of biodiversity change: needs, gaps and solutions'.

Attackers gain the upper hand over plants in the face of rapid global change

Interactions among organisms in natural ecosystems are the foundational underpinnings of nearly all ecological studies. It has never been more important to increase our awareness of how these interactions are altered by human activity, threatening biodiversity and disrupting ecosystem functioning. Much of the historic focus of species conservation has been the preservation of endangered and endemic species at risk from hunting, over-exploitation, and habitat destruction. However, there is increasing evidence that differences between plants and their attacking organisms in the speed and direction of physiological, demographic, and genetic (adaptation) responses to global change are having devastating consequences, resulting in large-scale losses of dominant or abundant plant species, particularly in forest ecosystems. From the elimination in the wild of the American chestnut to the extensive regional damage caused by insect outbreaks in temperate forest ecosystems, these losses of dominant species change the ecological landscape and functioning, and represent important threats to biodiversity at all scales. Introductions due to human activity, range shifts due to climate change, and their combination are the principal drivers behind these profound ecosystem changes. In this Review, we argue that there is an urgent need to increase our recognition and hone our predictive power for how these imbalances may occur. Moreover, we should seek to minimize the consequences of these imbalances in order to ensure the preservation of the structure, function and biodiversity of entire ecosystems, not just rare or highly endangered species.

Land cover differentially affects abundance of common and rare birds

While rare species are vulnerable to global change, large declines in common species (i.e., those with large population sizes, large geographic distributions, and/or that are habitat generalists) also are of conservation concern. Understanding if and how commonness mediates species' responses to global change, including land cover change, can help guide conservation strategies. We explored avian population responses to land cover change along a gradient from common to rare species using avian data from the North American Breeding Bird Survey (BBS) and land cover data from the National Land Cover Database for the conterminous United States. Specifically, we used generalized linear mixed effects models to ask if species' commonness affected the relationship between land cover and counts, using the initial amount of and change in land cover surrounding each North American BBS route from 2001 to 2016. We quantified species' commonness as a continuous metric at the national scale using the logarithm (base 10) of each species' total count across all routes in the conterminous United States in 2001. For our focal 15-year period, we found that higher proportions of initial natural land cover favored (i.e., were correlated with higher) counts of rare but not common species. We also found that commonness mediated how change in human land cover, but not natural land cover, was associated with species' counts at the end of the study period. Increases in developed lands did not favor counts of any species. Increases in agriculture and declines in pasture favored counts of common but not rare species. Our findings show a signal of commonness in how species respond to a major dimension of global change. Evaluating how and why commonness mediates species' responses to land cover change can help managers design conservation portfolios that sustain the spectrum of common to rare species.

Common seed dispersers contribute most to the persistence of a fleshy-fruited tree

Mutualistic interactions are by definition beneficial for each contributing partner. However, it is insufficiently understood how mutualistic interactions influence partners throughout their lives. Here, we used animal species-explicit, microhabitat-structured integral projection models to quantify the effect of seed dispersal by 20 animal species on the full life cycle of the tree Frangula alnus in Białowieża Forest, Eastern Poland. Our analysis showed that animal seed dispersal increased population growth by 2.5%. The effectiveness of animals as seed dispersers was strongly related to the interaction frequency but not the quality of seed dispersal. Consequently, the projected population decline due to simulated species extinction was driven by the loss of common rather than rare mutualist species. Our results support the notion that frequently interacting mutualists contribute most to the persistence of the populations of their partners, underscoring the role of common species for ecosystem functioning and nature conservation.

Spatially structured freshwater fish population dynamics at the River Basin District scale: Implication for environmental management and fish conservation

European Union environmental policy has created a unique regulatory framework to favour aquatic ecosystem management and biodiversity conservation across European countries. Identifying the spatial structure of freshwater fish population dynamics is crucial to define region-specific management and conservation planning. To implement evidence-driven management and conservation decisions at a regional scale we assessed spatial heterogeneity in common freshwater fish population dynamics in France with a focus on trends in River Basin Districts (RBDs). The abundance and biomass growth rates of 18 common European freshwater fish species were estimated with state-space models on 546 sites distributed across the 5 main RBDs sampled in France between 1990 and 2011. Anguilla anguilla, Rutilus rutilus, Salmo trutta fario and Esox spp. exhibited large scale decline in abundance and/or biomass in several RBDs. The other species showed spatial heterogeneity in population growth rates. The main declines were observed in the Adour-Garonne and Loire-Bretagne RBDs, where management and conservation measures are urgently needed to halt the erosion of freshwater fish populations. In each of the 5 investigated RBDs, our results highlight areas where most of the common species we studied exhibited negative population growth rates. Freshwater fish surveys provide the fundamental information necessary to inform the European environmental policies and local environmental management needed to restore freshwater biodiversity. The next steps are to identify the main drivers of freshwater biodiversity erosion in the areas where we demonstrated major declines and to define the most cost-effective restoration measures.

Long-Term Winter Population Trends of Corvids in Relation to Urbanization and Climate at Northern Latitudes

Corvids (crows, magpies, jays) live in a close association with humans, and therefore knowledge about their population status and changes will be an essential part of monitoring the quality of urban environments. Wintering bird populations can track habitat and climate changes more rapidly than breeding populations. We conducted a long-term (1991-2020) winter census of corvid species in 31 human settlements along a 920 km latitudinal gradient in Finland. We observed a total of five corvid species: the Eurasian Magpie (occurring in 114 surveys out of 122; total abundance 990 ind.), the Hooded Crow (in 96 surveys; 666 ind.), the Eurasian Jackdaw (in 51 surveys; 808 ind.), the Eurasian Jay (in 5 surveys; 6 ind.) and the Rook (in 1 survey; 1 ind.). Only the numbers of the Eurasian Jackdaw differed between the study winters, being greater at the end of the study period (2019/2020) than during the earlier winters (1991/1992 and 1999/2000). The average growth rate (λ) of the Eurasian Jackdaw increased during the study period, whereas no changes were observed in the cases of the Hooded Crow or the Eurasian Magpie. The growth rate of the Eurasian Jackdaw was greater than that observed in the Finnish bird-monitoring work, probably because our data came only from the core area of each human settlement. Even though the number of buildings and their cover increased in the study plots, and the winter temperature differed between winters, the average growth rate (λ) of corvid species did not significantly correlate with these variables. These results suggest that urban settlements are stable wintering environments for the generalist corvids. The between-species interactions were all positive, but non-significant. Despite the total number of winter-feeding sites being greater during the winter of 1991/1992 than during the winter of 2019/2020, the changes in the numbers of feeding stations did not correlate with the growth rates of any corvid species. We assume that the Eurasian Jackdaw has benefitted from the decreased persecution, and probably also from large-scale climate warming that our study design was unable to take in to account. Our results indicated that wintering corvid populations succeed well in the human settlements in Finland. We recommend conducting long-term corvid research, also during breeding season, to understand more detailed causes of the population changes of corvids along an urban gradient. Without year-round long-term monitoring data, the conservation and management recommendations related to the corvid species in urban habitats may be misleading.

Linking animal behavior to ecosystem change in disturbed environments

Environmental disturbances often cause individuals to change their behavior. The behavioral responses can induce a chain of reactions through the network of species interactions, via consumptive and trait mediated connections. Given that species interactions define ecosystem structure and functioning, changes to these interactions often have ecological repercussions. Here, we explore the transmission of behavioral responses through the network of species interactions, and how the responses influence ecological conditions. We describe the underlying mechanisms and the ultimate impact that the behavioral responses can have on ecosystem structure and functioning, including biodiversity and ecosystems stability and services. We explain why behavioral responses of some species have a larger impact than that of others on ecosystems, and why research should focus on these species and their interactions. With the work, we synthesize existing theory and empirical evidence to provide a conceptual framework that links behavior responses to altered species interactions, community dynamics, and ecosystem processes. Considering that species interactions link biodiversity to ecosystem functioning, a deeper understanding of behavioral responses and their causes and consequences can improve our knowledge of the mechanisms and pathways through which human activities alter ecosystems. This knowledge can improve our ability to predict the effects of ongoing disturbances on communities and ecosystems and decide on the interventions needed to mitigate negative effects.

The ecosystem impacts of dominant species exclusion in a prairie restoration

Dominant species often have disproportionately high abundance in restored communities compared to native remnants, which potentially could reduce the conservation value of restorations. Research is needed to determine how the abundance of dominant species in restoration plantings affects community assembly, species diversity, and ecosystem function. Most studies of dominant species in grasslands were modeled after experiments on keystone species, using the short-term experimental removal of dominants to test their functional role in ecosystems. However, the removal of established dominants constitutes a major disturbance that may influence the interpretation of their long-term functional impact. To address this, we experimentally assembled high-diversity tallgrass prairie communities that included or excluded the predicted dominant species (Andropogon gerardii and Sorghastrum nutans) from the seed mix at the time of planting, but without further manipulation of community composition. From 2013 to 2019, we measured several ecosystem functions and community dynamics in the presence or absence of dominants. Communities that included the dominant species had lower species richness, greater aboveground biomass, and reduced light availability at the soil surface. Dominant species presence also increased soil nutrient availability and rates of litter decomposition, although dominant grass litter decomposed more slowly than litter from other common species in both treatments. In the absence of the dominant grasses, communities were instead dominated by a common unplanted forb, Solidago altissima, and there was partial compensation in ecosystem functioning in these forb-dominated communities. The effects of dominant species exclusion may only be apparent in long-term studies of experimentally assembled communities that avoid the legacy effects associated with removal experiments. Furthermore, our results suggest that prairie restorations that limit or exclude the dominant grasses in seed mixes may achieve higher species diversity, increasing the conservation value of these systems.

What is valued in conservation? A framework to compare ethical perspectives

Perspectives in conservation are based on a variety of value systems. Such differences in how people value nature and its components lead to different evaluations of the morality of conservation goals and approaches, and often underlie disagreements in the formulation and implementation of environmental management policies. Specifically, whether a conservation action (e.g. killing feral cats to reduce predation on bird species threatened with extinction) is viewed as appropriate or not can vary among people with different value systems. Here, we present a conceptual, mathematical framework intended as a tool to systematically explore and clarify core value statements in conservation approaches. Its purpose is to highlight how fundamental differences between these value systems can lead to different prioritizations of available management options and offer a common ground for discourse. The proposed equations decompose the question underlying many controversies around management decisions in conservation: what or who is valued, how, and to what extent? We compare how management decisions would likely be viewed under three idealised value systems: ecocentric conservation, which aims to preserve biodiversity; new conservation, which considers that biodiversity can only be preserved if it benefits humans; and sentientist conservation, which aims at minimising suffering for sentient beings. We illustrate the utility of the framework by applying it to case studies involving invasive alien species, rewilding, and trophy hunting. By making value systems and their consequences in practice explicit, the framework facilitates debates on contested conservation issues, and complements philosophical discursive approaches about moral reasoning. We believe dissecting the core value statements on which conservation decisions are based will provide an additional tool to understand and address conservation conflicts.

Rare and common species contribute disproportionately to the functional variation within tropical forests

Understanding how functional traits and functional entities (FEs, i.e., unique combinations of functional traits) are distributed within plant communities can contribute to the understanding of vegetation properties and changes in species composition. We utilized investigation data on woody plants (including trees, shrubs and lianas) from 17 1-ha plots across six old-growth tropical forest types on Hainan island, China. Plant species were categorized as common (>1 individuals/ha) and rare species (≤1 individuals/ha) according to their abundance to determine how they contributed to different ecosystem functions. First, we assessed the differences in traits between common and rare species, and second, we examined functional redundancy, functional over-redundancy, and functional vulnerability for common and rare species of the forests. We found that both common species and rare species in each of the forest types were placed into just a few FEs, leading to functional over-redundancy and resulting in functional vulnerability. Rare species tended to have different trait values than those of common species, and were differently distributed among FEs, indicating different contributions to ecosystem functioning. Our results highlighted the disproportionate contribution of rare species in all of the studied forests. Rare species are more likely than common species to possess unique FEs, and thus, they have a disproportionately large contribution to community trait space. The loss of such species may impact the functioning, redundancy, and resilience of tropical forests.

Response of Common and Rare Beetle Species to Tree Species and Vertical Stratification in a Floodplain Forest

Simple Summary

The vertical structure and the tree species in a forest have a strong influence on the communities of wood-inhabiting beetles. Little is known about how this influence varies between rare and common beetle species. We compared alpha and beta diversity patterns of common and rare species in the canopy of the Leipzig floodplain forest to assess their response to vertical structuring of the canopy and tree species. We assessed rarity firstly by using red list status and secondly based on the abundances of the beetle species. The understory displayed a significantly higher number of common species than the tree canopy. Conversely, the canopy harbored a higher number of rare species. The beetles’ beta diversity patterns were predominantly shaped by differences in species composition, not by differences in species richness. Vertical structure had a higher influence on the beetle communities than tree species. Both factors had a higher influence on common than on rare beetle species. Our results indicate that studies carried out in the understory alone do not allow drawing conclusions regarding the biodiversity in the forest canopy, and thus regarding the overall community structure of xylobiont beetles in the canopy.

Abstract

Vertical stratification and host tree species are factors with a high influence on the structure of communities of xylobiont beetles. However, little is known about how this influence varies between common and rare species. Based on estimated species richness, we compared alpha and beta diversity patterns of common and rare species in the canopy of the Leipzig floodplain forest to assess their response to vertical stratification and tree species. We used two measures of rarity: threat level in red lists and abundance based on octaves. The understory displayed a significantly higher number of common species than the canopy strata. Conversely, the canopy strata harbored a higher number of rare species. Turnover was always dominant over richness differences in beta diversity partitions. Using Raup–Crick null models and non-metric multidimensional scaling, we found that the vertical strata accounted for 19% of the overall beta diversity of common species and for 15% of the overall beta diversity of rare species. The tree species accounted for 7% of the overall beta diversity of the common species and 3% of the beta diversity of the rare species. Our results indicate that studies carried out in the understory alone do not allow drawing conclusions regarding the biodiversity in the canopy strata, and thus regarding the overall community structure of xylobiont beetles in the canopy.

Bird occupancy in intensively managed agroecosystems under large-scale organic and conventional farming in Argentina: A multi-species approach

Several studies in European and North American agroecosystems conclude that organic farming benefits birds compared to conventional farming. Nevertheless, there are some biases toward these geographic regions and farm size. Argentinian agroecosystems are particularly homogeneous with large arable fields and sparse uncultivated field margins (i.e. large-scale homogenous cropping systems). In Argentina only 0.55% of the total farmland is under organic farming. Thus, our aims were to assess differences in bird occupancy between organic versus conventional farming regimes, and whether bird occupancy varied in relation to annual crop proportion in both farming regimes in central Argentina agroecosystems. We surveyed 156 points in farms under conventional and 154 in organic farming regimes during two bird-breeding seasons. We used multi-species occupancy models with a Bayesian approach to estimate bird occupancy. We observed that the type of farming regime (organic in relation to conventional) had a weak effect on avian occupancy, varying by species and groups. Probability of occupancy was higher for a few insectivorous and omnivorous species but lower for carnivores in organic farms in relation to conventional ones. The proportion of annual crops was positively correlated with occupancy of an insectivore aerial forager, some insectivore foliage gleaners, a granivore, and some omnivorous species in organic farms, but not conventional farms. This work contributes to reducing geographic and small-scale heterogeneous cropping system biases in the avian agroecological literature. Our results, together with future studies needed to assess landscape configuration and composition, and resource availability for birds in each farming regime, will allow the evaluation of organic farming as a tool for the conservation of bird species in large-scale homogeneous cropping systems in temperate regions.

The Decline of Common Birds Exemplified by the Western Jackdaw Warns on Strong Environmental Degradation

Bird populations associated with agricultural ecosystems have declined markedly in Europe during the last quarter of the 20th century due to land-use intensification. This has meant that some very common species, in some cases even species considered as pests, are now threatened or subject to management programs to ensure their conservation. Considered pests of crops and predators of small game species, corvids are among the most persecuted common farmland birds. The consideration that these birds are pests lacks any scientific evaluation and is justified by the subjective impression that they are abundant. Here, using estimates of absolute and relative abundances of both the total and the breeding population, we show how jackdaws Corvus monedula have shown a marked negative population trend in central Spain during the last 40 years. Decline involves the loss of multiple colonies, the apparent absence of the species as a breeder in riverside forests, and an overall numerical decrease of about 75% (from 35,000 to 9000 individuals) according to counts in communal roosts. The population decline seems to be more pronounced in areas where land use has been intensified, probably in response to the reduction in the availability of once-abundant food (i.e., invertebrates and weed seeds) but also due to more direct effects such as intoxication and medium to long-term accumulation of agricultural pollutants which may have also affected reproduction and survival. Intensive hunting over decades has undoubtedly contributed to this decline and should therefore be made forbidden urgently. Generally, it seems that high-intensity agricultural management more drastically affects smaller and less adaptable common species, which are expected to decline before and at a higher extent and magnitude than jackdaws. Given that global population estimates based on direct counts of individuals are readily achievable through simultaneous counts in communal roosts, the jackdaw can serve as a model for assessing temporal trends potentially linked to large-scale anthropogenic modifications of open and agricultural environments.

Abundance decline in the avifauna of the European Union reveals cross-continental similarities in biodiversity change

Although global assessments provide evidence of biodiversity decline, some have questioned the strength of the evidence, with local assemblage studies often showing a more balanced picture of biodiversity change. The multifaceted nature of biodiversity and imperfect monitoring datasets may partially explain these findings. Here, using an extensive dataset, we find significant biodiversity loss in the native avifauna of the European Union (EU). We estimate a decline of 17-19% in the overall breeding bird abundance since 1980: a loss of 560-620 million individual birds. Both total and proportional declines in bird numbers are high among species associated with agricultural land. The distribution of species' population growth rates (ln) is centered close to zero, with numerical decline driven by substantial losses in abundant species. Our work supports previous assessments indicating substantial recent biodiversity loss and calls to reduce the threat of extinctions and restore species' abundances, for the sake of nature and people.

A multi-site method to capture turnover in rare to common interactions in bipartite species networks

Ecological network structure is maintained by a generalist core of common species. However, rare species contribute substantially to both the species and functional diversity of networks. Capturing changes in species composition and interactions, measured as turnover, is central to understanding the contribution of rare and common species and their interactions. Due to a large contribution of rare interactions, the pairwise metrics used to quantify interaction turnover are, however, sensitive to compositional change in the interactions of, often rare, peripheral specialists rather than common generalists in the network. Here we expand on pairwise interaction turnover using a multi-site metric that enables quantifying turnover in rare to common interactions (in terms of occurrence of interactions). The metric further separates this turnover into interaction turnover due to species turnover and interaction rewiring. We demonstrate the application and value of this method using a host-parasitoid system sampled along gradients of environmental modification. In the study system, both the type and amount of habitat needed to maintain interaction composition depended on the properties of the interactions considered, that is, from rare to common. The analyses further revealed the potential of host switching to prevent or delay species loss, and thereby buffer the system from perturbation. Multi-site interaction turnover provides a comprehensive measure of network change that can, for example, detect ecological thresholds to habitat loss for rare to common interactions. Accurate description of turnover in common, in addition to rare, species and their interactions is particularly relevant for understanding how network structure and function can be maintained.

Informing wetland management with waterfowl movement and sanctuary use responses to human-induced disturbance

Long-term environmental management to prevent waterfowl population declines is informed by ecology, movement behavior and habitat use patterns. Extrinsic factors, such as human-induced disturbance, can cause behavioral changes which may influence movement and resource needs, driving variation that affects management efficacy. To better understand the relationship between human-based disturbance and animal movement and habitat use, and their potential effects on management, we GPS tracked 15 dabbling ducks in California over ~4-weeks before, during and after the start of a recreational hunting season in October/November 2018. We recorded locations at 2-min intervals across three separate 24-h tracking phases: Phase 1) two weeks before the start of the hunting season (control (undisturbed) movement); Phase 2) the hunting season opening weekend; and Phase 3) a hunting weekend two weeks after opening weekend. We used GLMM models to analyze variation in movement and habitat use under hunting pressure compared with 'normal' observed patterns prior to commencement of hunting. We also compared responses to differing levels of disturbance related to the time of day (high - shooting/~daytime); moderate - non-lethal (~crepuscular); and low - night). During opening weekend flight (% time and distance) more than doubled during moderate and low disturbance and increased by ~50% during high disturbance compared with the pre-season weekend. Sanctuary use tripled during moderate and low disturbance and increased ~50% during high disturbance. Two weeks later flight decreased in all disturbance levels but was only less than the pre-season levels during high disturbance. In contrast, sanctuary use only decreased at night, although not to pre-season levels, while daytime doubled from ~45% to >80%. Birds adjust rapidly to disturbance and our results have implications for energetics models that estimate population food requirements. Management would benefit from reassessing the juxtaposition of essential sanctuary and feeding habitats to optimize wetland management for waterfowl.

Domestic Filth Flies in New Haven, Connecticut: A Case Study on the Effects of Urbanization and Climate Change by Comparing Fly Populations after 78 Years

Simple Summary

Domestic filth fly population data were collected in the summers of 1942–1944 in the urban city of New Haven, Connecticut, during a polio epidemic. The current survey was completed 78 years later by setting out a weekly trap in the same region during June–September over a two-year period. Results indicate that the fly population has changed in the city, with 16 fewer species trapped overall, and there have been changes in the fly species trapped. Some species have increased in abundance, notably Lucilia coeruleiviridis, while numbers of the common Lucilia sericata have decreased, and Lucilia illustris was absent. Changes in land cover and climate were also assessed to show that the trap site has experienced significant habitat change, together with an increase in the average temperature and rainfall. Fly numbers were significantly affected by temperature and rainfall in both the 1940s and the current survey. The results of this study suggest the prolonged period of urbanization of the region is influencing the domestic filth fly population.

Abstract

Changes in common and widespread insect populations such as the domestic filth fly in urban cities are useful and relevant bioindicators for overall changes in the insect biomass. The current study surveyed necrophagous flies by placing a weekly trap from June–September over a two-year period in the city of New Haven, Connecticut, to compare data on fly abundance and diversity with data collected 78 years earlier. Climate and land cover changes were also assessed in combination with the fly population for each period. The survey results suggest the domestic filth fly population is now less diverse with decreased species richness and changes in the relative abundance of species. In both surveys, 95–96% of the population was composed of only three species. The current survey data indicate the numerical dominance of Lucilia sericata has decreased, the abundance of several species, notably Lucilia coeruleiviridis, has increased, and Lucilia illustris is absent. Species that showed a significant interaction with temperature in the 1940s survey have now increased in abundance, with several of the trapped species continuing to show an interaction with temperature and rainfall. Analysis of the land cover and climate data characterizes the trap site as a region exposed to a prolonged period of industrialization and urbanization, with only 7% of the land cover remaining undeveloped and over 50% impervious, coupled with an increase in temperature and rainfall. This study serves as a model for changes in domestic filth fly populations and other insects in similarly highly urbanized established cities.

Why a landscape view is important: nearby urban and agricultural land affects bird abundances in protected areas

Protected areas are one of the primary conservation tools used worldwide. However, they are often embedded in a landscape that is intensely used by people, such as for agriculture or urban development. The proximity of these land-use types to protected areas can potentially affect the ecological effectiveness (or conservation effectiveness) of protected areas. In this article, we examine to what degree adjacent agricultural and urban land uses affect the ecological effectiveness of protected areas over the greater Gauteng region of South Africa. We selected 198 common, resident bird species, and analysed detection/non-detection data for these species collected over regular grid cells (approximately 61 km² in area). For each species, we estimated abundance per grid cell with the Royle-Nichols model in relation to the proportion of protected area as a covariate. Our study focused on how this relationship between proportion of protected area and abundance (which we term the ‘protection–abundance relationship’) changed as a function of other land-use types in the grid cell. Specifically, we examined the interaction effects between protected area and both urban and agricultural land-use type per grid cell on bird abundance. We assigned each species to one of seven guilds, namely: frugivores, gleaners, granivores, ground-feeders, hawkers, predators and vegivores, and examined how the protection–abundance relationship varied across guilds in relation to agriculture and urban area. As urban area within a grid cell increased, the protection–abundance relationship became more positive for 58% of all species. At the level of guilds, the protection–abundance relationship became more positive for two guilds (granivores and ground-feeders), more negative for frugivores, and remained unchanged for the other four guilds (gleaners, hawkers, predators and vegivores). As agricultural area within a grid cell increased, the protection–abundance relationship became more positive for 49% of all species. At the guild level, the protection–abundance relationship became more positive for six guilds (frugivores, gleaners, ground-feeders, hawkers, predators and vegivores) and remained unchanged for the granivores. Our results show land-use type near protected areas modified the effect protected areas had on bird abundances, and hence the ecological effectiveness of protected areas. Our results suggest that protected areas should be viewed as constituents within the landscape, rather than islands of protection.

Limited potential for bird migration to disperse plants to cooler latitudes

Climate change is forcing the redistribution of life on Earth at an unprecedented velocity^1,2. Migratory birds are thought to help plants to track climate change through long-distance seed dispersal^3,4. However, seeds may be consistently dispersed towards cooler or warmer latitudes depending on whether the fruiting period of a plant species coincides with northward or southward migrations. Here we assess the potential of plant communities to keep pace with climate change through long-distance seed dispersal by migratory birds. To do so, we combine phenological and migration information with data on 949 seed-dispersal interactions between 46 bird and 81 plant species from 13 woodland communities across Europe. Most of the plant species (86%) in these communities are dispersed by birds migrating south, whereas only 35% are dispersed by birds migrating north; the latter subset is phylogenetically clustered in lineages that have fruiting periods that overlap with the spring migration. Moreover, the majority of this critical dispersal service northwards is provided by only a few Palaearctic migrant species. The potential of migratory birds to assist a small, non-random sample of plants to track climate change latitudinally is expected to strongly influence the formation of novel plant communities, and thus affect their ecosystem functions and community assembly at higher trophic levels.

Lake-stream transition zones support hotspots of freshwater ecosystem services: Evidence from a 35-year study on unionid mussels

Securing adequate supply of high-quality water is of increasing global importance and relies in large part on ecosystem services provided by freshwater biota. Unionid mussels are important keystone species and habitat engineers that shape freshwater ecosystems through water filtration, nutrient cycling and provision of habitats; their rapid global declines result in dramatic losses of ecosystem functions. Maintenance and enhancement of the services they provide depend on the identification of their crucial habitats. Following theoretical assumptions, this study analyses the importance of lake-stream transition zones for unionid mussels, based on data collected in 1984 and 2019 from an undisturbed stream flowing through five consecutive lakes. Mussel distribution matched the distribution of host fish and was strongly influenced by lakes: densities were highest near lake outlets, reaching 290 ind. m^-2 (14.7 kg m^-2) in 2019, and declined with downstream distance following a negative power function. This pattern was spatially consistent and sustained over time. All six unionid species native to north-central Europe were present, but common species (Anodonta anatina, Unio pictorum, U. tumidus) contributed about 80% of individuals and were responsible for most of the ecosystem services provided by unionid mussels. Estimated 1.9 × 10⁶ mussel individuals inhabiting 3.2 km of stream length filtered a water volume equivalent to the total stream discharge approximately 2.5 times daily. Aggregations of spent shells, up to 17 kg m^-2, accumulated downstream of lakes, forming extensive shell and mussel beds, providing habitats and contributing shell hash that improved stream-bed conditions. Globally invasive Dreissena polymorpha was present at low densities and did not spread or increase in abundance, indicating a long-term biotic resistance of the natural native community. Our study underscores the importance of undisturbed lake outlets, longitudinal connectivity of riverine ecosystems, and of common mussel species in maintaining freshwater ecosystem functionality and provision of vital services.

Defining codominance in plant communities

Species dominance and biodiversity in plant communities have received considerable attention and characterisation. However, species codominance, while often alleged, is seldom defined or quantified. Codominance is a common phenomenon and is likely to be an important driver of community structure, ecosystem function and the stability of both. Here we review the use of the term 'codominance' and find inconsistencies in its use, suggesting that the scientific community currently lacks a universal understanding of codominance. We address this issue by: (1) qualitatively defining codominance as mostly shared abundance that is distinctively isolated within a subset of a community, and (2) presenting a novel metric for quantifying the degree to which relative abundances are shared among a codominant subset of plant species, while also accounting for the remaining species within a plant community. Using both simulated and real-world data, we then demonstrate the process of applying the codominance metric to compare communities and to generate a quantitatively defensible subset of species to consider codominant within a community. We show that our metric effectively distinguishes the degree of codominance between four types of grassland ecosystems as well as simulated ecosystems with varying degrees of abundance sharing among community members. Overall, we make the case that increased research focusses on the conditions under which codominance occurs and the consequences for species coexistence, community structure and ecosystem function that would considerably advance the fields of community and ecosystem ecology.

The State of Migratory Landbirds in the East Asian Flyway: Distributions, Threats, and Conservation Needs

With nearly 400 migratory landbird species, the East Asian Flyway is the most diverse of the world’s flyways. This diversity is a consequence of the varied ecological niches provided by biomes ranging from broadleaf forests to arctic tundra and accentuated by complex biogeographic processes. The distribution and migration ecology of East Asian landbirds is still inadequately known, but a recent explosion in the number of studies tracking the migration of raptors, cuckoos, kingfishers and passerines has greatly increased our knowledge about the stopover and wintering ecology of many species, and the migratory routes that link northeast Eurasia and the Asian tropics. Yet the East Asian Flyway also supports the highest number of threatened species among flyways. Strong declines have been detected in buntings (Emberizidae) and other long-distance migrants. While the conservation of migratory landbirds in this region has largely focused on unsustainable hunting, there are other threats, such as habitat loss and increased agro-chemical use driven directly by land cover change and climate-related processes. Important knowledge gaps to be addressed include (1) threats affecting species in different parts of their annual cycle, (2) range-wide population trends, (3) ecological requirements and habitat use during the non-breeding season, and (4) the conservation status of critical wintering sites (including understudied farming landscapes, such as rice fields) and migration bottlenecks along the flyway.

Landscape-scale differences among cities alter common species' responses to urbanization

Understanding how biodiversity responds to urbanization is challenging, due in part to the single-city focus of most urban ecological research. Here, we delineate continent-scale patterns in urban species assemblages by leveraging data from a multi-city camera trap survey and quantify how differences in greenspace availability and average housing density among 10 North American cities relate to the distribution of eight widespread North American mammals. To do so, we deployed camera traps at 569 sites across these ten cities between 18 June and 14 August. Most data came from 2017, though some cities contributed 2016 or 2018 data if it was available. We found that the magnitude and direction of most species' responses to urbanization within a city were associated with landscape-scale differences among cities. For example, eastern gray squirrel (Sciurus carolinensis), fox squirrel (Sciurus niger), and red fox (Vulpes vulpes) responses to urbanization changed from negative to positive once the proportion of green space within a city was >~20%. Likewise, raccoon (Procyon lotor) and Virginia opossum (Didelphis virginiana) responses to urbanization changed from positive to negative once the average housing density of a city exceeded about 700 housing units/km² . We also found that local species richness within cities consistently declined with urbanization in only the more densely developed cities (>~700 housing units/km² ). Given our results, it may therefore be possible to design cities to better support biodiversity and reduce the negative influence of urbanization on wildlife by, for example, increasing the amount of green space within a city. Additionally, it may be most important for densely populated cities to find innovative solutions to bolster wildlife resilience because they were the most likely to observe diversity losses of common urban species.

The importance of common and the irrelevance of rare species for partition the variation of community matrix: implications for sampling and conservation

In community ecology, it is important to understand the distribution of communities along environmental and spatial gradients. However, it is common for the residuals of models investigating those relationships to be very high (> 50%). It is believed that species’ intrinsic characteristics such as rarity can contribute to large residuals. The objective of this study is to test the relationship among communities and environmental and spatial predictors by evaluating the relative contribution of common and rare species to the explanatory power of models. Our hypothesis is that the residual of partition the variation of community matrix (varpart) models will decrease as rare species get removed. We used several environmental variables and spatial filters as varpart model predictors of fish and Zygoptera (Insecta: Odonata) communities in 109 and 141 Amazonian streams, respectively. We built a repetition structure, in which we gradually removed common and rare species independently. After the repetitions and removal of species, our hypothesis was not corroborated. In all scenarios, removing up to 50% of rare species did not reduce model residuals. Common species are important and rare species are irrelevant for understanding the relationships among communities and environmental and spatial gradients using varpart. Therefore, our findings suggest that studies using varpart with single sampling events that do not detect rare species can efficiently assess general distributional patterns of communities along environmental and spatial gradients. However, when the objectives concern conservation of biodiversity and functional diversity, rare species must be carefully assessed by other complementary methods, since they are not well represented in varpart models.

Hotspots of species loss do not vary across future climate scenarios in a drought-prone river basin

Climate change is expected to alter the distributions of species around the world, but estimates of species' outcomes vary widely among competing climate scenarios. Where should conservation resources be directed to maximize expected conservation benefits given future climate uncertainty? Here, we explore this question by quantifying variation in fish species' distributions across future climate scenarios in the Red River basin south-central United States. We modeled historical and future stream fish distributions using a suite of environmental covariates derived from high-resolution hydrologic and climatic modeling of the basin. We quantified variation in outcomes for individual species across climate scenarios and across space, and identified hotspots of species loss by summing changes in probability of occurrence across species. Under all climate scenarios, we find that the distribution of most fish species in the Red River Basin will contract by 2050. However, the variability across climate scenarios was more than 10 times higher for some species than for others. Despite this uncertainty in outcomes for individual species, hotspots of species loss tended to occur in the same portions of the basin across all climate scenarios. We also find that the most common species are projected to experience the greatest range contractions, underscoring the need for directing conservation resources toward both common and rare species. Our results suggest that while it may be difficult to predict which species will be most impacted by climate change, it may nevertheless be possible to identify spatial priorities for climate mitigation actions that are robust to future climate uncertainty. These findings are likely to be generalizable to other ecosystems around the world where future climate conditions follow prevailing historical patterns of key environmental covariates.

Biologia Futura: landscape perspectives on farmland biodiversity conservation

European nature conservation has a strong focus on farmland harbouring threatened species that mainly co-occur with traditional agriculture shaped way before the green revolution. Increased land-use intensity in agriculture has caused an alarming decline in farmland biodiversity during the last century. How can a landscape perspective contribute to fostering our understanding on causes and consequences of farmland biodiversity decline and improving the effectiveness of conservation measures? To answer these questions, we discuss the importance of landscape compositional and configurational heterogeneity, understanding ecological mechanisms determining how landscape structure affects farmland biodiversity and considering the interplay of farmland biodiversity and ecosystem service conservation.