The deep ocean under climate change

Effects of marine heatwaves on primary and secondary production in macroalgae-amphipod systems

Marine heatwaves are becoming more frequent and intense as climate change progresses, with potential consequences for the functioning of marine ecosystems, particularly macroalgal beds and their associated mesoherbivores. While the direct effects of heatwaves on macroalgae have been well studied, the interactions between species at different trophic levels that affect ecosystem functioning remain underexplored. The aim of this study was to investigate how marine heatwaves affect primary and secondary productivity in marine ecosystems. We conducted a mesocosm experiment combining the macroalga Sargassum filipendula and the mesoherbivore amphipod Cymadusa filosa under two temperature scenarios: a current summer temperature (27 °C) and a heatwave scenario (32 °C), with and without herbivores. The experiment lasted 30 days, with 5 days of marine heatwave. All replicates were kept at 27 °C for ten days. Then, the 'heatwave' treatment replicates were exposed to 32 °C for five days. Subsequently, all replicates were returned to 27 °C and maintained for 15 days until the end of the experiment. We evaluated the variation in macroalgal biomass and the variation in amphipod biomass and abundance. The results showed that heatwaves reduced primary and secondary productivity, with the greatest effects observed on primary producers. The reduction in primary productivity suggests that these extreme events may compromise the ability of macroalgae to support the base of the coastal food web and facilitate the occurrence of an abundant and diverse associated fauna. Thus, changes in mesoherbivore biomass may have significant implications for higher trophic levels, affecting the dynamics and stability of marine ecosystems. These results suggest that marine heatwaves affect the functioning of marine ecosystems by reducing productivity, potentially altering the flow of energy and matter along the food web, and affecting ecosystem services such as carbon storage by algae.

Assessing the success of marine ecosystem restoration using meta-analysis

Marine ecosystem restoration success stories are needed to incentivize society and private enterprises to build capacity and stimulate investments. Yet, we still must demonstrate that restoration efforts can effectively contribute to achieving the targets set by the UN Decade on Ecosystem Restoration. Here, we conduct a meta-analysis on 764 active restoration interventions across a wide range of marine habitats worldwide. We show that marine ecosystem restorations have an average success of ~64% and that they are: viable for a large variety of marine habitats, including deep-sea ecosystems; highly successful for saltmarshes, tropical coral reefs and habitat-forming species such as animal forests; successful at all spatial scales, so that restoration over large spatial scales can be done using multiple interventions at small-spatial scales that better represent the natural variability, and scalable through dedicated policies, regulations, and financing instruments. Restoration interventions were surprisingly effective even in areas where human impacts persisted, demonstrating that successful restorations can be initiated before all stressors have been removed. These results demonstrate the immediate feasibility of a global 'blue restoration' plan even for deep-sea ecosystems, enabled by increasing availability of new and cost-effective technologies.

Comparing temporal and aggregated network descriptions of fluid transport in the Mediterranean Sea

Ocean currents exhibit strong time dependence at all scales that influences physical and biochemical dynamics. Network approaches to fluid transport permit to address explicitly how connectivity across the seascape is affected by the spatiotemporal variability of currents. However, such temporal aspect is mostly neglected, relying on a static representation of the flow. We here investigate the role of current variability on networks describing physical transport across the Mediterranean basin. We first focus on degree distributions and community structure comparing ensembles of temporal networks that explicitly resolve time dependence and their aggregated, i.e., time-averaged, counterparts. Furthermore, we explore the implications of the two approaches in a simple reaction dispersal model for a generic tracer. Our analysis evidences that aggregation induces structural network changes that cannot be easily avoided, not even introducing a pruning of the aggregated adjacency matrix. We also highlight that, depending on the time scales considered, the importance of the temporal features of the networks can vary significantly. Finally, we find that the tracer evolution obtained from a temporal dispersal kernel cannot be always approximated by aggregated adjacency matrices, in particular during transients of the dynamics.

Polymer material biodegradation in the deep sea. A review

The phenomenon of marine plastic pollution is now well-established, with documented impacts on marine biodiversity and biogeochemical cycles. In order to mitigate this environmental impact, a significant amount of research has been conducted in recent years with the objective of developing biodegradable alternatives to conventional polymers and their composites in marine environments. The findings of this research significantly enhanced our understanding of biodegradation mechanisms and identified promising candidates. However, the majority of these studies have been conducted in coastal marine environments, which represent a minor component of the marine ecosystem. Recent models on the transport of plastic debris in the oceans indicate that deep-sea environments are likely to be the ultimate sink for a significant proportion of plastics entering the oceans. The aim of this review is to provide an overview of the processes of biodegradation of polymers in these deep-sea environments. The diversity and specific characteristics of these environments with respect to degradation mechanisms are discussed. While the majority of deep-sea conditions are not conducive to biodegradation, studies on organic falls (wood and whale carcasses) and a few investigations into materials previously shown to be biodegradable in coastal marine environments demonstrate mechanisms that are similar to those observed in shallow waters. Nevertheless, further research is necessary to reach definitive conclusions. It is essential to extend these studies to a broader range of deep-sea environments. Additionally, new methodologies that integrate microbiology and polymer science are required to accurately assess the process of assimilation of these materials in these environments.

Climate change drives fish communities: Changing multiple facets of fish biodiversity in the Northwest Pacific Ocean

Global marine biodiversity is experiencing significant alterations due to climate change. Incorporating phylogenetic and functional diversity may provide novel insights into these impacts. This study used an ensemble model approach (random forest and boosted regression tree), to predict the habitat distribution of 47 fish species in the Northwestern Pacific under contemporary (2000-2014) and future scenarios (2040-2050, 2090-2100). We first examined the relationship between eleven functional traits and habitat changes, predicting the spatial distribution of functional traits within fish communities. A significant correlation was observed between temperature preference and habitat changes, highlighting the vulnerability of cold-water species and potential advantages for warm-water species in the future. Moreover, fish communities exhibited a spatial gradient distribution with southern regions characterized by shorter-lived and earlier maturity, contrasting with longer-lived and later maturity species in the north. Secondly, to assess the impact of climate change on marine biodiversity, we explored the taxonomic, phylogenetic, and functional diversity under contemporary and future scenarios, revealing higher indices in the East China Sea (ECS) and the coastal sea of Japan, with the Taiwan Strait emerging as a contemporary biodiversity hotspot. In future scenarios, the three biodiversity indices would decline in the Yellow Sea and ECS, but increase in the sea beyond the continental shelf, coastal sea of Hokkaido, and Sea of Okhotsk. Lastly, we explored processes and mechanisms in the change of community composition. By quantifying β-diversity, we identified species loss (nestedness) as the primary driver of fish community change by 2040-2050, with species replacement (turnover) predicted to become dominant in the far future. Our results explore the potential changes in multiple facets of fish biodiversity, providing crucial insights for policymakers aiming to protect fish resources and biodiversity.

High functional vulnerability across the world's deep-sea hydrothermal vent communities

At the nearly pristine hydrothermal vents of the deep sea, highly endemic animals depend upon bacteria nourished by hydrothermal fluids that emerge as outflows from the seafloor. These animals are remarkable in tolerating extreme conditions, including high heat, toxic reduced sulfide, and low oxygen. Here, we test whether the extreme vent environment has selected for functionally similar species across the world's deep ocean, despite well-established global geographic patterns of high phylogenetic distinctness. High functional redundancy in species pools within regions suggests that the extreme environments select for species with specific traits. Yet, some regions emerge as functional hotspots where species pools with distinct functional trait compositions may represent geological idiosyncrasies of the habitats. Moreover, many species are functionally unique, an outcome of low species richness in a system where the species pool is small at all scales. Given the high proportion of functionally unique species, simulated species extinctions indicate that species losses would rapidly translate to the elimination of functionally irreplaceable species and could tip vent systems to functional collapse. Ocean changes and human-induced threats are expected to significantly impact many vent species as human activities expand in the remote deep sea. The opportunity exists now to take precautionary actions to limit the rates of extinction now ubiquitous in more accessible areas of Earth.

Coati optimization algorithm based Deep Convolutional Forest method for prediction of atmospheric and oceanic parameters

Droughts and floods are examples of extreme weather events that can result from changes in ocean temperature. Ocean temperature is a key component of the global open sea system. Currently, real-time sea surface temperature (SST) forecasts are generated by numerical models based on physics principles and influenced by boundary and initial conditions. These models generally perform better over large areas than at specific locations. To address this and improve prediction accuracy, particularly in high-precision areas, the Coati Optimization Algorithm-based Deep Convolutional Forest (COA-DCF) method is proposed. This optimization approach is utilized to train the Deep Convolutional Forest (DCF) classifier, which then applies the prediction strategy. The COA-DCF method forecasts ocean surface temperature anomalies by considering key variables such as SST, Sea Surface Height (SSH), soil moisture, and wind speed, using historical data ranging from 1 to 10 days across six different locations. The proposed method achieves improved accuracy with low Root Mean Square Error (RMSE) and Mean Absolute Error (MAE) values, and a high Pearson's correlation coefficient (r) of 0.493, 0.487, and 0.4733, respectively, thereby enhancing the overall performance of the deep learning model.

Unraveling the physiological responses of morphologically distinct corals to low oxygen

Background

Low oxygen in marine environments, intensified by climate change and local pollution, poses a substantial threat to global marine ecosystems, especially impacting vulnerable coral reefs and causing metabolic crises and bleaching-induced mortality. Yet, our understanding of the potential impacts in tropical regions is incomplete. Furthermore, uncertainty surrounds the physiological responses of corals to hypoxia and anoxia conditions.

Methods

We initially monitored in situ dissolved oxygen (DO) levels at Kham Island in the lower Gulf of Thailand. Subsequently, we conducted a 72-hour experimental exposure of corals with different morphologies-Pocillopora acuta, Porites lutea, and Turbinaria mesenterina-to low oxygen conditions, while following a 12/12-hour dark/light cycle. Three distinct DO conditions were employed: ambient (DO 6.0 ± 0.5 mg L-1), hypoxia (DO 2.0 ± 0.5 mg L-1), and anoxia (DO < 0.5 mg L-1). We measured and compared photosynthetic efficiency, Symbiodiniaceae density, chlorophyll concentration, respiratory rates, primary production, and calcification across the various treatments.

Results

Persistent hypoxia was observed at the study site. Subsequent experiments revealed that low oxygen levels led to a notable decrease in the maximum quantum yield over time in all the species tested, accompanied by declining rates of respiration and calcification. Our findings reveal the sensitivity of corals to both hypoxia and anoxia, particularly affecting processes crucial to energy balance and structural integrity. Notably, P. lutea and T. mesenterina exhibited no mortality over the 72-hour period under hypoxia and anoxia conditions, while P. acuta, exposed to anoxia, experienced mortality with tissue loss within 24 hours. This study underscores species-specific variations in susceptibility associated with different morphologies under low oxygen conditions. The results demonstrate the substantial impact of deoxygenation on coral growth and health, with the compounded challenges of climate change and coastal pollution exacerbating oxygen availability, leading to increasingly significant implications for coral ecosystems.

Effects of catchment land use on temperate mangrove forests

Human land use changes are threatening the integrity and health of coastal ecosystems worldwide. Intensified land use for anthropogenic purposes increases sedimentation rates, pollutants, and nutrient concentrations into adjacent coastal areas, often with detrimental effects on marine life and ecosystem functioning. However, how these factors interact to influence ecosystem health in mangrove forests is poorly understood. This study investigates the effects of catchment human land use on mangrove forest architecture and sedimentary attributes at a landscape-scale. Thirty sites were selected along a gradient of human land use within a narrow latitudinal range, to minimise the effects of varying climatic conditions. Land use was quantified using spatial analysis tools with existing land use databases (LCDB5). Twenty-six forest architectural and sedimentary variables were collected from each site. The results revealed a significant effect of human land use on ten out of 26 environmental variables. Eutrophication, characterised by changes in redox potential, pH, and sediment nutrient concentrations, was strongly associated with increasing human land use. The δ15N values of sediments and leaves also indicated increased anthropogenic nitrogen input. Furthermore, the study identified a positive correlation between human land use and tree density, indicating that increased nutrient delivery from catchments contributes to enhanced mangrove growth. Propagule and seedling densities were also positively correlated with human land use, suggesting potential recruitment success mechanisms. This research underpins the complex interactions between human land use and mangrove ecosystems, revealing changes in carbon dynamics, potential alterations in ecosystem services, and a need for holistic management approaches that consider the interconnectedness of species and their environment. These findings provide essential insights for regional ecosystem models, coastal management, and restoration strategies to address the impacts of human pressures on temperate mangrove forests, even in estuaries that may be relatively healthy.

The vulnerability of sharks, skates, and rays to ocean deoxygenation: Physiological mechanisms, behavioral responses, and ecological impacts

Levels of dissolved oxygen in open ocean and coastal waters are decreasing (ocean deoxygenation), with poorly understood effects on marine megafauna. All of the more than 1000 species of elasmobranchs (sharks, skates, and rays) are obligate water breathers, with a variety of life-history strategies and oxygen requirements. This review demonstrates that although many elasmobranchs typically avoid hypoxic water, they also appear capable of withstanding mild to moderate hypoxia with changes in activity, ventilatory responses, alterations to circulatory and hematological parameters, and morphological alterations to gill structures. However, such strategies may be insufficient to withstand severe, progressive, or prolonged hypoxia or anoxia where anaerobic metabolic pathways may be used for limited periods. As water temperatures increase with climate warming, ectothermic elasmobranchs will exhibit elevated metabolic rates and are likely to be less able to tolerate the effects of even mild hypoxia associated with deoxygenation. As a result, sustained hypoxic conditions in warmer coastal or surface-pelagic waters are likely to lead to shifts in elasmobranch distributions. Mass mortalities of elasmobranchs linked directly to deoxygenation have only rarely been observed but are likely underreported. One key concern is how reductions in habitat volume as a result of expanding hypoxia resulting from deoxygenation will influence interactions between elasmobranchs and industrial fisheries. Catch per unit of effort of threatened pelagic sharks by longline fisheries, for instance, has been shown to be higher above oxygen minimum zones compared to adjacent, normoxic regions, and attributed to vertical habitat compression of sharks overlapping with increased fishing effort. How a compound stressor such as marine heatwaves alters vulnerability to deoxygenation remains an open question. With over a third of elasmobranch species listed as endangered, a priority for conservation and management now lies in understanding and mitigating ocean deoxygenation effects in addition to population declines already occurring from overfishing.

Vulnerability of Eastern Tropical Pacific chondrichthyan fish to climate change

Climate change is an environmental emergency threatening species and ecosystems globally. Oceans have absorbed about 90% of anthropogenic heat and 20%-30% of the carbon emissions, resulting in ocean warming, acidification, deoxygenation, changes in ocean stratification and nutrient availability, and more severe extreme events. Given predictions of further changes, there is a critical need to understand how marine species will be affected. Here, we used an integrated risk assessment framework to evaluate the vulnerability of 132 chondrichthyans in the Eastern Tropical Pacific (ETP) to the impacts of climate change. Taking a precautionary view, we found that almost a quarter (23%) of the ETP chondrichthyan species evaluated were highly vulnerable to climate change, and much of the rest (76%) were moderately vulnerable. Most of the highly vulnerable species are batoids (77%), and a large proportion (90%) are coastal or pelagic species that use coastal habitats as nurseries. Six species of batoids were highly vulnerable in all three components of the assessment (exposure, sensitivity and adaptive capacity). This assessment indicates that coastal species, particularly those relying on inshore nursery areas are the most vulnerable to climate change. Ocean warming, in combination with acidification and potential deoxygenation, will likely have widespread effects on ETP chondrichthyan species, but coastal species may also contend with changes in freshwater inputs, salinity, and sea level rise. This climate-related vulnerability is compounded by other anthropogenic factors, such as overfishing and habitat degradation already occurring in the region. Mitigating the impacts of climate change on ETP chondrichthyans involves a range of approaches that include addressing habitat degradation, sustainability of exploitation, and species-specific actions may be required for species at higher risk. The assessment also highlighted the need to further understand climate change's impacts on key ETP habitats and processes and identified knowledge gaps on ETP chondrichthyan species.

Marine macro-litter mass outweighs biomass in trawl catches along abyssal seafloors of Sardinia channel (Italy)

This study provides new insights onto spatial and temporal trends of seafloor macro-litter in the abyssal seafloor of Sardinian channel, in central western Mediterranean (Italy). Trawl surveys were conducted at depths between 884 and 1528 m, thus focusing on one of the least investigated marine environments. None of the considered sites was litter free, with plastics being numerically dominant (57% of items), followed by metal (11%) and glass (16%). Recorded densities and weight ranged between 49.9 and 499 items km-2 and 1.4 and 1052 kg km-2. In the most contaminated sites, the weight of the litter collected in nets represented up to nine times the biomass of benthic megafauna, and, overall, in 60% of hauls macro-litter mass outweighed the biomass collected. Moreover, we report that megafauna was observed to be more abundant in sites where macro-litter presence was more severe. More studies are needed to elucidate the nature of this correlation, with biota being more abundant in hotspots of accumulation of seafloor macro-litter.

Projected habitat preferences of commercial fish under different scenarios of climate change

The challenges of commercial species with the threats of climate change make it necessary to predict the changes in the distributional shifts and habitat preferences of the species under possible future scenarios. We aim to demonstrate how future climatic changes will affect the habitat suitability of three species of commercial fish using the predictive technique MaxEnt. The dataset used to extract geographical records included OBIS (54%), GBIF (1%), and literature (45%). The output of the model indicated accurate projections of MaxEnt (AUC above 0.9). Temperature was the main descriptor responsible for the main effects on the distribution of commercial fish. With increasing RCP from 2.5 to 8.5, the species would prefer saltier, higher temperatures and deeper waters in the future. We observed different percentages of suitable habitats between species during RCPs showing distinct sensitivity of each fish in facing climate changes. Negative effects from climate change on the distribution patterns of commercial fish were predicted to lead to varying degrees of reduction and changes of suitable habitats and movement of species towards higher latitudes. The finding emphasizes to implement adaptive management measures to preserve the stocks of these commercial fish considering that the intensification of the effects of climate change on subtropical areas and overexploited species is predicted.

Incorporating physiological knowledge into correlative species distribution models minimizes bias introduced by the choice of calibration area

Correlative species distribution models (SDMs) are important tools to estimate species' geographic distribution across space and time, but their reliability heavily relies on the availability and quality of occurrence data. Estimations can be biased when occurrences do not fully represent the environmental requirement of a species. We tested to what extent species' physiological knowledge might influence SDM estimations. Focusing on the Japanese sea cucumber Apostichopus japonicus within the coastal ocean of East Asia, we compiled a comprehensive dataset of occurrence records. We then explored the importance of incorporating physiological knowledge into SDMs by calibrating two types of correlative SDMs: a naïve model that solely depends on environmental correlates, and a physiologically informed model that further incorporates physiological information as priors. We further tested the models' sensitivity to calibration area choices by fitting them with different buffered areas around known presences. Compared with naïve models, the physiologically informed models successfully captured the negative influence of high temperature on A. japonicus and were less sensitive to the choice of calibration area. The naïve models resulted in more optimistic prediction of the changes of potential distributions under climate change (i.e., larger range expansion and less contraction) than the physiologically informed models. Our findings highlight benefits from incorporating physiological information into correlative SDMs, namely mitigating the uncertainties associated with the choice of calibration area. Given these promising features, we encourage future SDM studies to consider species physiological information where available.

Supplementary Information

The online version contains supplementary material available at 10.1007/s42995-024-00226-0.

Electromechanical enhancement of live jellyfish for ocean exploration

The vast majority of the ocean's volume remains unexplored, in part because of limitations on the vertical range and measurement duration of existing robotic platforms. In light of the accelerating rate of climate change impacts on the physics and biogeochemistry of the ocean, the need for new tools that can measure more of the ocean on faster timescales is becoming pressing. Robotic platforms inspired or enabled by aquatic organisms have the potential to augment conventional technologies for ocean exploration. Recent work demonstrated the feasibility of directly stimulating the muscle tissue of live jellyfish via implanted microelectronics. We present a biohybrid robotic jellyfish that leverages this external electrical swimming control, while also using a 3D printed passive mechanical attachment to streamline the jellyfish shape, increase swimming performance, and significantly enhance payload capacity. A six-meter-tall, 13 600 l saltwater facility was constructed to enable testing of the vertical swimming capabilities of the biohybrid robotic jellyfish over distances exceeding 35 body diameters. We found that the combination of external swimming control and the addition of the mechanical forebody resulted in an increase in swimming speeds to 4.5 times natural jellyfish locomotion. Moreover, the biohybrid jellyfish were capable of carrying a payload volume up to 105% of the jellyfish body volume. The added payload decreased the intracycle acceleration of the biohybrid robots relative to natural jellyfish, which could also facilitate more precise measurements by onboard sensors that depend on consistent platform motion. While many robotic exploration tools are limited by cost, energy expenditure, and varying oceanic environmental conditions, this platform is inexpensive, highly efficient, and benefits from the widespread natural habitats of jellyfish. The demonstrated performance of these biohybrid robots suggests an opportunity to expand the set of robotic tools for comprehensive monitoring of the changing ocean.

Fluid chemistry alters faunal trophodynamics but not composition on the deep-sea Capelinhos hydrothermal edifice (Lucky Strike vent field, Mid-Atlantic Ridge)

The recently discovered deep-sea Capelinhos hydrothermal edifice, ~ 1.5 km of the main Lucky Strike (LS) vent field (northern Mid-Atlantic Ridge), contrasts with the other LS edifices in having poorly-altered end-member hydrothermal fluids with low pH and chlorine, and high metal concentrations. Capelinhos unique chemistry and location offer the opportunity to test the effects of local abiotic filters on faunal community structure while avoiding the often-correlated influence of dispersal limitation and depth. In this paper, we characterize for the first time the distribution patterns of the Capelinhos faunal communities, and analyze the benthic invertebrates (> 250 µm) inhabiting diffusive-flow areas and their trophic structures (δ13C, δ15N and δ34S). We hypothesized that faunal communities would differ from those of the nearest LS vent edifices, showing an impoverished species subset due to the potential toxicity of the chemical environment. Conversely, our results show that: (1) community distribution resembles that of other LS edifices, with assemblages visually dominated by shrimps (close to high-temperature focused-fluid areas) and mussels (at low-temperature diffuse flow areas); (2) most species from diffuse flow areas are well-known LS inhabitants, including the bed-forming and chemosymbiotic mussel Bathymodiolus azoricus and (3) communities are as diverse as those of the most diverse LS edifices. On the contrary, stable isotopes suggest different trophodynamics at Capelinhos. The high δ15N and, especially, δ13C and δ34S values suggest an important role of methane oxidation (i.e., methanotrophy), rather than the sulfide oxidation (i.e., thiotrophy) that predominates at most LS edifices. Our results indicate that Capelinhos shows unique environmental conditions, trophic structure and trophodynamics, yet similar fauna, compared to other LS edifices, which suggest a great environmental and trophic plasticity of the vent faunal communities at the LS.

The distribution of subarctic and boreal deep-sea demersal fish assemblages across environmental gradients of the northwest Atlantic

The oceanography of the Labrador Sea is well studied because of its globally important deep-water convection that oxygenates the deep ocean and drives climate-regulating ocean currents. However, little is known about the fish communities that inhabit this area, particularly beyond the depths accessible to standard research surveys and commercial fishing activities. We used baited longline surveys to characterize important components of demersal fish communities across a depth gradient of 200-3000 m and compared these data to a similar dataset collected c. 1200 km to the south in the Flemish Cap Region. We found demersal fish communities in the Labrador Sea to be similar to those of the Flemish Cap Region despite unique oceanography and lower primary productivity in the Labrador Sea. Moreover, both areas had high abundance, biomass, and species richness at intermediate depths that suggests factors beyond depth drive community structure in the deep ocean. These data are important for identifying high-value areas for potential protective measures in the northwest Atlantic and provide necessary data with which to assess potential environmental impacts of extractive industries that are expanding north and to deeper waters.

Experimental mining plumes and ocean warming trigger stress in a deep pelagic jellyfish

The deep pelagic ocean is increasingly subjected to human-induced environmental change. While pelagic animals provide important ecosystem functions including climate regulation, species-specific responses to stressors remain poorly documented. Here, we investigate the effects of simulated ocean warming and sediment plumes on the cosmopolitan deep-sea jellyfish Periphylla periphylla, combining insights gained from physiology, gene expression and changes in associated microbiota. Metabolic demand was elevated following a 4 °C rise in temperature, promoting genes related to innate immunity but suppressing aerobic respiration. Suspended sediment plumes provoked the most acute and energetically costly response through the production of excess mucus (at ≥17 mg L-1), while inducing genes related to aerobic respiration and wound repair (at ≥167 mg L-1). Microbial symbionts appeared to be unaffected by both stressors, with mucus production maintaining microbial community composition. If these responses are representative for other gelatinous fauna, an abundant component of pelagic ecosystems, the effects of planned exploitation of seafloor resources may impair deep pelagic biodiversity and ecosystem functioning.

Intra- and Interspecific Foraging and Feeding Interactions in Three Sea Stars and a Gastropod from the Deep Sea

Competitive interactions come in a variety of forms and may be modulated by the size and number of individuals involved, and/or the resources available. Here, intra- and interspecific competitive behaviours for food (i.e., foraging/food search and feeding/food ingestion) were experimentally characterized and quantified in four co-existing deep-sea benthic species. Three sea stars (Ceramaster granularis, Hippasteria phrygiana, and Henricia lisa) and one gastropod (Buccinum scalariforme) from the bathyal Northwest Atlantic were investigated using video trials in darkened laboratory conditions. A range of competitive or cooperative behaviours occurred, depending on species (conspecific or heterospecific), comparative body size, and the number of individuals involved. Contrary to expectations, small individuals (or smaller species) were not always outcompeted by larger individuals (or larger species) when foraging and feeding. Moreover, faster species did not always outcompete slower ones while scavenging. Overall, this study sheds new light on scavenging strategies of co-existing deep-sea benthic species in food-limited bathyal environments, based on complex behavioural inter- and intraspecific relationships.

ROV-based monitoring of passive ecological recovery in a deep-sea no-take fishery reserve

In the context of marine conservation, trawl fishing activity is the most important ecosystem stressor in demersal Mediterranean waters. Limited management measures in bottom trawling have caused deep-sea stocks of the iconic Norway lobster Nephrops norvegicus to decrease over the last decade. This crustacean acts as an umbrella species for co-existing megafauna. Here, we used non-invasive Remote Operated Vehicle (ROV) video-surveys to investigate the status of a pilot deep-sea no-take reserve implemented in the northwestern Mediterranean by quantifying demographic indicators of Norway lobsters and the co-existing benthic community, seafloor restoration, and the presence of marine litter. The results revealed that in the no-take reserve the Norway lobster stock showed higher abundance and biomass, and slightly larger body sizes than in the control area without fishing prohibition. Some taxa, such as the fishes Helicolenus dactylopterus and Trigla lyra and anemones of the family Cerianthidae, increased in abundance. We also observed that all trawling marks were smoothed and most of the seafloor was intact, clear indicators of the recovery of the muddy seafloor. The accumulation of marine debris and terrestrial vegetation was similar in the no-take reserve and the fished area. On the basis of the results of this study, we suggest that the use of no-take reserves might be an effective measure for recovering the Norway lobster stock, its co-existing megafauna community, and the surrounding demersal habitat. We also suggest that ROV video-survey might be a useful, and non-invasive method to monitor megafauna and seafloor status in protected deep-sea environments.

Widespread global disparities between modelled and observed mid-depth ocean currents

The mid-depth ocean circulation is critically linked to actual changes in the long-term global climate system. However, in the past few decades, predictions based on ocean circulation models highlight the lack of data, knowledge, and long-term implications in climate change assessment. Here, using 842,421 observations produced by Argo floats from 2001-2020, and Lagrangian simulations, we show that only 3.8% of the mid-depth oceans, including part of the equatorial Pacific Ocean and the Antarctic Circumpolar Current, can be regarded as accurately modelled, while other regions exhibit significant underestimations in mean current velocity. Knowledge of ocean circulation is generally more complete in the low-latitude oceans but is especially poor in high latitude regions. Accordingly, we propose improvements in forecasting, model representation of stochasticity, and enhancement of observations of ocean currents. The study demonstrates that knowledge and model representations of global circulation are substantially compromised by inaccuracies of significant magnitude and direction, with important implications for modelled predictions of currents, temperature, carbon dioxide sequestration, and sea-level rise trends.

Benthic biogeographic patterns on the deep Brazilian margin

The Brazilian continental margin (BCM) extends from the Tropical to the Subtropical Atlantic Ocean, with much of its seafloor within deep waters, supporting rich geomorphological features and under wide productivity gradients. Deep-sea biogeographic boundaries on the BCM have been limited to studies that used water mass and salinity properties of deep-water masses, partly as a result of historical under sampling and a lack of consolidation of available biological and ecological datasets. The aim of this study was to consolidate benthic assemblage datasets and test current oceanographic biogeographical deep-sea boundaries (200-5,000 m) using available faunal distributions. We retrieved over 4,000 benthic data records from open-access databases and used cluster analysis to examine assemblage distributions against the deep-sea biogeographical classification scheme from Watling et al. (2013). Starting from the assumption that vertical and horizontal distribution patterns can vary regionally, we test other schemes incorporating latitudinal and water masses stratification within the Brazilian margin. As expected, the classification scheme based on benthic biodiversity is in overall agreement with the general boundaries proposed by Watling et al. (2013). However, our analysis allowed much refinement in the former boundaries, and here we propose the use of two biogeographic realms, two provinces and seven bathyal ecoregions (200-3,500 m), and three abyssal provinces (>3,500 m) along the BCM. The main driver for these units seems to be latitudinal gradients as well as water mass characteristics such as temperature. Our study provides a significant improvement of benthic biogeographic ranges along the Brazilian continental margin allowing a more detailed recognition of its biodiversity and ecological value, and also supports the needed spatial management for industrial activities occurring in its deep waters.

A device for assessing microbial activity under ambient hydrostatic pressure: The in situ microbial incubator (ISMI)

Microbes in the dark ocean are exposed to hydrostatic pressure increasing with depth. Activity rate measurements and biomass production of dark ocean microbes are, however, almost exclusively performed under atmospheric pressure conditions due to technical constraints of sampling equipment maintaining in situ pressure conditions. To evaluate the microbial activity under in situ hydrostatic pressure, we designed and thoroughly tested an in situ microbial incubator (ISMI). The ISMI allows autonomously collecting and incubating seawater at depth, injection of substrate and fixation of the samples after a preprogramed incubation time. The performance of the ISMI was tested in a high-pressure tank and in several field campaigns under ambient hydrostatic pressure by measuring prokaryotic bulk 3H-leucine incorporation rates. Overall, prokaryotic leucine incorporation rates were lower at in situ pressure conditions than under to depressurized conditions reaching only about 50% of the heterotrophic microbial activity measured under depressurized conditions in bathypelagic waters in the North Atlantic Ocean off the northwestern Iberian Peninsula. Our results show that the ISMI is a valuable tool to reliably determine the metabolic activity of deep-sea microbes at in situ hydrostatic pressure conditions. Hence, we advocate that deep-sea biogeochemical and microbial rate measurements should be performed under in situ pressure conditions to obtain a more realistic view on deep-sea biotic processes.

The global depth range of marine fishes and their genetic coverage for environmental DNA metabarcoding

The bathymetric and geographical distribution of marine species represent a key information in biodiversity conservation. Yet, deep-sea ecosystems are among the least explored on Earth and are increasingly impacted by human activities. Environmental DNA (eDNA) metabarcoding has emerged as a promising method to study fish biodiversity but applications to the deep-sea are still scarce. A major limitation in the application of eDNA metabarcoding is the incompleteness of species sequences available in public genetic databases which reduces the extent of detected species. This incompleteness by depth is still unknown. Here, we built the global bathymetric and geographical distribution of 10,826 actinopterygian and 960 chondrichthyan fish species. We assessed their genetic coverage by depth and by ocean for three main metabarcoding markers used in the literature: teleo and MiFish-U/E. We also estimated the number of primer mismatches per species amplified by in silico polymerase chain reaction which influence the probability of species detection. Actinopterygians show a stronger decrease in species richness with depth than Chondrichthyans. These richness gradients are accompanied by a continuous species turnover between depths. Fish species coverage with the MiFish-U/E markers is higher than with teleo while threatened species are more sequenced than the others. "Deep-endemic" species, those not ascending to the shallow depth layer, are less sequenced than not threatened species. The number of primer mismatches is not higher for deep-sea species than for shallower ones. eDNA metabarcoding is promising for species detection in the deep-sea to better account for the 3-dimensional structure of the ocean in marine biodiversity monitoring and conservation. However, we argue that sequencing efforts on "deep-endemic" species are needed.

Distribution and predicted climatic refugia for a reef-building cold-water coral on the southeast US margin

Climate change is reorganizing the planet's biodiversity, necessitating proactive management of species and habitats based on spatiotemporal predictions of distributions across climate scenarios. In marine settings, climatic changes will predominantly manifest via warming, ocean acidification, deoxygenation, and changes in hydrodynamics. Lophelia pertusa, the main reef-forming coral present throughout the deep Atlantic Ocean (>200 m), is particularly sensitive to such stressors with stark reductions in suitable habitat predicted to accrue by 2100 in a business-as-usual scenario. However, with new occurrence data for this species along with higher-resolution bathymetry and climate data, it may be possible to locate further climatic refugia. Here, we synthesize new and published biogeographic, geomorphological, and climatic data to build ensemble, multi-scale habitat suitability models for L. pertusa on the continental margin of the southeast United States (SEUS). We then project these models in two timepoints (2050, 2100) and four climate change scenarios to characterize the occurrence probability of this critical cold-water coral (CWC) habitat now and in the future. Our models reveal the extent of reef habitat in the SEUS and corroborate it as the largest currently known essentially continuous CWC reef province on earth, and also predict abundance of L. pertusa to identify key areas, including those outside areas currently protected from bottom-contact fishing. Drastic reductions in L. pertusa climatic suitability index emerged primarily after 2050 and were concentrated at the shallower end (<~550 m) of the regional distribution under the Gulf Stream main axis. Our results thus suggest a depth-driven climate refuge effect where deeper, cooler reef sites experience lesser declines. The strength of this effect increases with climate scenario severity. Taken together, our study has implications for the regional and global management of this species, portending changes in the biodiversity reliant on CWC habitats and the critical ecosystem services they provide.

Impact of Microbial Uptake on the Nutrient Plume around Marine Organic Particles: High-Resolution Numerical Analysis

The interactions between marine bacteria and particulate matter play a pivotal role in the biogeochemical cycles of carbon and associated inorganic elements in the oceans. Eutrophic plumes typically form around nutrient-releasing particles and host intense bacterial activities. However, the potential of bacteria to reshape the nutrient plumes remains largely unexplored. We present a high-resolution numerical analysis for the impacts of nutrient uptake by free-living bacteria on the pattern of dissolution around slow-moving particles. At the single-particle level, the nutrient field is parameterized by the Péclet and Damköhler numbers (0 < Pe < 1000, 0 < Da < 10) that quantify the relative contribution of advection, diffusion and uptake to nutrient transport. In spite of reducing the extent of the nutrient plume in the wake of the particle, bacterial uptake enhances the rates of particle dissolution and nutrient depletion. These effects are amplified when the uptake timescale is shorter than the plume lifetime (Pe/Da < 100, Da > 0.0001), while otherwise they are suppressed by advection or diffusion. Our analysis suggests that the quenching of eutrophic plumes is significant for individual phytoplankton cells, as well as marine aggregates with sizes ranging from 0.1 mm to 10 mm and sinking velocities up to 40 m per day. This microscale process has a large potential impact on microbial growth dynamics and nutrient cycling in marine ecosystems.

Effects of Hypoxia on Coral Photobiology and Oxidative Stress

Global ocean oxygen (O2) content is decreasing as climate change drives declines in oxygen solubility, strengthened stratification of seawater masses, increased biological oxygen consumption and coastal eutrophication. Studies on the biological effects of nocturnal decreased oxygen concentrations (hypoxia) on coral reefs are very scarce. Coral reefs are fundamental for supporting one quarter of all marine species and essential for around 275 million people worldwide. This study investigates acute physiological and photobiological responses of a scleractinian coral (Acropora spp.) to overnight hypoxic conditions (<2 mg/L of O2). Bleaching was not detected, and visual and physical aspects of corals remained unchanged under hypoxic conditions. Most photobiological-related parameters also did not show significant changes between treatments. In addition to this, no significant differences between treatments were observed in the pigment composition. However, hypoxic conditions induced a significant decrease in coral de-epoxidation state of the xanthophyll cycle pigments and increase in DNA damage. Although the present findings suggest that Acropora spp. is resilient to some extent to short-term daily oxygen oscillations, long-term exposure to hypoxia, as predicted to occur with climate change, may still have deleterious effects on corals.

Metabolic Tolerance to Atmospheric Pressure of Two Freshwater Endemic Amphipods Mostly Inhabiting the Deep-Water Zone of the Ancient Lake Baikal

Simple Summary

Deep-water habitats are the largest ecosystem on the planet: over half of the Earth’s surface is covered with a water layer deeper than 200 m and remains poorly explored. Lake Baikal is the only freshwater body inhabited by animals adapted to the deep-water zone independently from their marine counterparts. Comparing these convergently evolved freshwater and marine animals is invaluable for revealing the basic mechanisms of adaptation to high hydrostatic pressure. However, laboratory experiments on deep-water organisms still usually require lifting them to the water’s surface and exposing them to potentially hazardous decompression, while endemics from Lake Baikal are poorly studied in this regard. Here, we compared metabolic reactions to such pressure decreases in two Baikal deep-water amphipods (shrimp-like crustaceans) from the genus Ommatogammarus: one species is known to tolerate pressures close to atmospheric levels, while the second was only observed at the pressures from 5 atm and above. We expected that the energy metabolism of the shallower-dwelling species would function better under the atmospheric pressure but found no substantial differences. Thus, despite some difference in long-term survival at atmospheric pressure, both species are suitable for laboratory studies as freshwater model objects adapted to large pressure variations.

Abstract

Lake Baikal is the only freshwater reservoir inhabited by deep-water fauna, which originated mostly from shallow-water ancestors. Ommatogammarus flavus and O. albinus are endemic scavenger amphipods (Amphipoda, Crustacea) dwelling in wide depth ranges of the lake covering over 1300 m. O. flavus had been previously collected close to the surface, while O. albinus has never been found above the depth of 47 m. Since O. albinus is a promising model species for various research, here we tested whether O. albinus is less metabolically adapted to atmospheric pressure than O. flavus. We analyzed a number of energy-related traits (contents of glucose, glycogen and adenylates, as well as lactate dehydrogenase activity) and oxidative stress markers (activities of antioxidant enzymes and levels of lipid peroxidation products) after sampling from different depths and after both species’ acclimation to atmospheric pressure. The analyses were repeated in two independent sampling campaigns. We found no consistent signs of metabolic disturbances or oxidative stress in both species right after lifting. Despite O. flavus surviving slightly better in laboratory conditions, during long-term acclimation, both species showed comparable reactions without critical changes. Thus, the obtained data favor using O. albinus along with O. flavus for physiological research under laboratory conditions.

ROV observations reveal infection dynamics of gill parasites in midwater cephalopods

Gill parasites of coleoid cephalopods are frequently observed during remotely operated vehicle (ROV) dives in the Monterey Submarine Canyon. However, little knowledge exists on the identity of the parasite species or their effects on the cephalopod community. With the help of ROV-collected specimens and in situ footage from the past 27 years, we report on their identity, prevalence and potential infection strategy. Gill parasites were genetically and morphologically identified from collected specimens of Chiroteuthis calyx, Vampyroteuthis infernalis and Gonatus spp. In situ prevalence was estimated from video footage for C. calyx, Galiteuthis spp., Taonius spp. and Japetella diaphana, enabled by their transparent mantle tissue. The most common parasite was identified as Hochbergia cf. moroteuthensis, a protist of unresolved taxonomic ranking. We provide the first molecular data for this parasite and show a sister group relationship to the dinoflagellate genus Oodinium. Hochbergia cf. moroteuthensis was most commonly observed in adult individuals of all species and was sighted year round over the analyzed time period. In situ prevalence was highest in C. calyx (75%), followed by Galiteuthis spp. (29%), Taonius spp. (27%) and J. diaphana (7%). A second parasite, not seen on the in situ footage, but occurring within the gills of Gonatus berryi and Vampyroteuthis infernalis, could not be found in the literature or be identified through DNA barcoding. The need for further investigation is highlighted, making this study a starting point for unravelling ecological implications of the cephalopod-gill-parasite system in deep pelagic waters.

Impact of resuspended mine tailings on benthic biodiversity and ecosystem processes: The case study of Portmán Bay, Western Mediterranean Sea, Spain

Industrial seabed mining is expected to cause significant impacts on marine ecosystems, including physical disturbance and the generation of plumes of toxin-laden water. Portmán Bay (NW Mediterranean Sea), where an estimated amount of 60 Mt of mine tailings from sulphide ores were dumped from 1957 to 1990, is one of the most metal-polluted marine areas in Europe and worldwide. This bay can be used to assess the impact on marine ecosystems of particle settling from sediment plumes resulting from mine tailings resuspension. With this purpose in mind, we conducted a field experiment there to investigate subsequent effects of deposition of (artificially resuspended) contaminated sediments on (i) prokaryotic abundance and meiofaunal assemblages (in terms of abundance and diversity), (ii) the availability of trophic resources (in terms of organic matter biochemical composition), and (iii) a set of ecosystem functions including meiofaunal biomass, heterotrophic C production and C degradation rates. The results of this study show that mine tailings resuspension and plume deposition led to the decline of prokaryotic abundance and nematode's biodiversity. The later decreased because of species removal and transfer along with particle resuspension and plume deposition. Such changes were also associated to a decrease of the proteins content in the sediment organic matter, faster C degradation rates and higher prokaryotic C production. Overall, this study highlights that mine tailing resuspension and ensuing particle deposition can have deleterious effects on both prokaryotes and nematode diversity, alter biogeochemical cycles and accelerate C degradation rates. These results should be considered for the assessment of the potential effects of seabed mineral exploitation on marine ecosystems at large.

Food from the Depths of the Mediterranean: The Role of Habitats, Changes in the Sea-Bottom Temperature and Fishing Pressure

As part of the “Innovations in the Food System: Exploring the Future of Food” Special Issue, this paper briefly reviews studies that highlight a link between deep-sea fishery resources (deep-sea food resources) and vulnerable marine ecosystems (VME), species, and habitats in the Mediterranean Sea, providing new insights into changes in commercial and experimental catches of the deep-sea fishery resources in the central Mediterranean over the last 30 years. About 40% of the total landing of Mediterranean deep-water species is caught in the central basin. Significant changes in the abundance of some of these resources with time, sea-bottom temperature (SBT), and fishing effort (FE) have been detected, as well as an effect of the Santa Maria di Leuca cold-water coral province on the abundance of the deep-sea commercial crustaceans and fishes. The implications of these findings and the presence of several geomorphological features, sensitive habitats, and VMEs in the central Mediterranean are discussed with respect to the objectives of biodiversity conservation combined with those of management of fishery resources.

Marine anoxia linked to abrupt global warming during Earth's penultimate icehouse

Massive carbon (C) release with abrupt warming has occurred repeatedly during greenhouse states, and these events have driven episodes of ocean deoxygenation and extinction. Records from these paleo events, coupled with biogeochemical modeling, provide clear evidence that with continued warming, the modern oceans will experience substantial deoxygenation. There are, however, few constraints from the geologic record on the effects of rapid warming under icehouse conditions. We document a C-cycle perturbation that occurred under an Earth system state experiencing recurrent glaciation. A suite of proxies suggests increased seafloor anoxia during this event in step with abrupt increase in CO₂ partial pressure and a biodiversity nadir. Warming-mediated increases in marine anoxia may be more pronounced in a glaciated versus unglaciated climate state.

Piecing together the history of carbon (C) perturbation events throughout Earth’s history has provided key insights into how the Earth system responds to abrupt warming. Previous studies, however, focused on short-term warming events that were superimposed on longer-term greenhouse climate states. Here, we present an integrated proxy (C and uranium [U] isotopes and paleo CO₂) and multicomponent modeling approach to investigate an abrupt C perturbation and global warming event (∼304 Ma) that occurred during a paleo-glacial state. We report pronounced negative C and U isotopic excursions coincident with a doubling of atmospheric CO₂ partial pressure and a biodiversity nadir. The isotopic excursions can be linked to an injection of ∼9,000 Gt of organic matter–derived C over ∼300 kyr and to near 20% of areal extent of seafloor anoxia. Earth system modeling indicates that widespread anoxic conditions can be linked to enhanced thermocline stratification and increased nutrient fluxes during this global warming within an icehouse.

Thermal stress responses of the antipatharian Stichopathes sp. from the mesophotic reef of Mo'orea, French Polynesia

Antipatharians, also called black corals, are present in almost all oceans of the world, until extreme depths. In several regions, they aggregate in higher densities to form black coral beds that support diverse animal communities and create biodiversity hotspots. These recently discovered ecosystems are currently threatened by fishing activities and illegal harvesting for commercial purposes. Despite this, studies dedicated to the physiology of antipatharians are scarce and their responses to global change stressors have remained hardly explored since recently. Here, we present the first study on the physiological responses of a mesophotic antipatharian Stichopathes sp. (70-90 m) to thermal stress through a 16-d laboratory exposure (from 26 to 30.5 °C). Oxygen consumption measurements allowed identifying the physiological tipping point of Stichopathes sp. (T_opt = 28.3 °C; 2.7 °C above mean ambient condition). Our results follow theoretical predictions as performances start to decrease beyond T_opt, with lowered oxygen consumption rates, impairment of the healing capacities, increased probability of tissue necrosis and stress responses activated as a function of temperature (i.e. increase in mucocyte density and total antioxidant capacity). Altogether, our work indicates that Stichopathes sp. lives at suboptimal performances during the coldest months of the year, but also that it is likely to have low acclimatization capacity and a narrow thermal breadth.

Deep demersal fish communities respond rapidly to warming in a frontal region between Arctic and Atlantic waters

The assessment of climate impact on marine communities dwelling deeper than the well-studied shelf seas has been hampered by the lack of long-term data. For a long time, the prevailing expectation has been that thermal stability in deep ocean layers will delay ecosystem responses to warming. Few observational studies have challenged this view and indicated that deep organisms can respond exceptionally fast to physical change at the sea surface. To address the depth-specific impact of climate change, we investigated spatio-temporal changes in fish community structure along a bathymetry gradient of 150-1500 m between 1998 and 2016 in East Greenland. Here, the Arctic East Greenland Current and the Atlantic Irminger Current meet and mix, representing a sub-Arctic transition zone. We found the strongest signals of community reorganizations at depths between 350 and 1000 m and only weak responses in the shallowest and deepest regions. Changes were in synchrony with atmospheric warming, loss in sea ice and variability in physical sea surface conditions both within our study region and North of the Denmark Strait. These results suggest that interannual variability and long-term climate trends of the larger ecoregion can rapidly affect fish communities down to 1000-m depth through atmospheric ocean coupling and food web interactions.

Patterns of eukaryotic diversity from the surface to the deep-ocean sediment

Remote deep-ocean sediment (DOS) ecosystems are among the least explored biomes on Earth. Genomic assessments of their biodiversity have failed to separate indigenous benthic organisms from sinking plankton. Here, we compare global-scale eukaryotic DNA metabarcoding datasets (18S-V9) from abyssal and lower bathyal surficial sediments and euphotic and aphotic ocean pelagic layers to distinguish plankton from benthic diversity in sediment material. Based on 1685 samples collected throughout the world ocean, we show that DOS diversity is at least threefold that in pelagic realms, with nearly two-thirds represented by abundant yet unknown eukaryotes. These benthic communities are spatially structured by ocean basins and particulate organic carbon (POC) flux from the upper ocean. Plankton DNA reaching the DOS originates from abundant species, with maximal deposition at high latitudes. Its seafloor DNA signature predicts variations in POC export from the surface and reveals previously overlooked taxa that may drive the biological carbon pump.

Physiological Consequences of Oceanic Environmental Variation: Life from a Pelagic Organism's Perspective

To better understand life in the sea, marine scientists must first quantify how individual organisms experience their environment, and then describe how organismal performance depends on that experience. In this review, we first explore marine environmental variation from the perspective of pelagic organisms, the most abundant life forms in the ocean. Generation time, the ability to move relative to the surrounding water (even slowly), and the presence of environmental gradients at all spatial scales play dominant roles in determining the variation experienced by individuals, but this variation remains difficult to quantify. We then use this insight to critically examine current understanding of the environmental physiology of pelagic marine organisms. Physiologists have begun to grapple with the complexity presented by environmental variation, and promising frameworks exist for predicting and/or interpreting the consequences for physiological performance. However, new technology needs to be developed and much difficult empirical work remains, especially in quantifying response times to environmental variation and the interactions among multiple covarying factors. We call on the field of global-change biology to undertake these important challenges.

Human impacts on deep-sea sponge grounds: Applying environmental omics to monitoring

Sponges (Phylum Porifera) are the oldest extant Metazoans. In the deep sea, sponges can occur at high densities forming habitats known as sponge grounds. Sponge grounds can extend over large areas of up to hundreds of km² and are biodiversity hotspots. However, as human activities, including deep-water hydrocarbon extraction, continue to expand into areas harbouring sponge grounds, understanding how anthropogenic impacts affect sponges and the ecosystem services they provide at multiple biological scales (community, individual and (sub)cellular levels) is key for achieving sustainable management. This chapter (1) provides an update to the chapter of Advances in Marine Biology Volume 79 entitled "Potential Impacts of Offshore Oil and Gas Activities on Deep-Sea Sponges and the Habitats They Form" and (2) discusses the use of omics as a future tool for deep-sea ecosystem monitoring. While metagenomics and (meta)transcriptomics studies have contributed to improve our understanding of sponge biology in recent years, metabolomics analysis has mostly been used to identify natural products. The sponge metabolome, therefore, remains vastly unknown despite the fact that the metabolome is a key link between the genotype and phenotype, giving us a unique new insight to how key components of an ecosystem are functioning. As the fraction of the metabolome released into the seawater, the sponge exometabolome has only just started to be characterised in comparative environmental metabolomic studies. Yet, the sponge exometabolome constitute a unique opportunity for the identification of biomarkers of sponge health as compounds can be measured in seawater, bypassing the need for physical samples which can still be difficult to collect in the deep sea. Within sponge grounds, the characterisation of a shared sponge exometabolome could lead to the identification of biomarkers of ecosystem functioning and overall health. Challenges remain in establishing omics approaches in environmental monitoring but constant technological advances and reduction in costs means these techniques will become widely available in the future.

Plankton respiration in the Atacama Trench region: Implications for particulate organic carbon flux into the hadal realm

Respiration is a key process in the cycling of particulate matter and, therefore, an important control mechanism of carbon export to the ocean's interior. Most of the fixed carbon is lost in the upper ocean, and only a minor amount of organic material sustains life in the deep-sea. Conditions are particularly extreme in hadal trenches, and yet they host active biological communities. The source of organic carbon that supports them and the contribution of these communities to the ocean carbon cycle, however, remain uncertain. Here we report on size-fractionated depth profiles of plankton respiration assessed from the activity of the electron transport system in the Atacama Trench region, and provide estimates of the minimum carbon flux (FC) needed to sustain the respiratory requirements from the ocean surface to hadal waters of the trench and shallower nearby sites. Plankton < 100 μm contributed about 90% to total community respiration, whose magnitude was highly correlated with surface productivity. Remineralization rates were highest in the euphotic zone and declined sharply within intermediate oxygen-depleted waters, remaining fairly constant toward the bottom. Integrated respiration in ultra-deep waters (> 1000 m) was comparable to that found in upper layers, with 1.3 ± 0.4 mmol C m^-2 d^-1 being respired in the hadopelagic. The comparison between our FC models and estimates of sinking particle flux revealed a carbon imbalance through the mesopelagic that was paradoxically reduced at greater depths. We argue that large fast-sinking particles originated in the overlying surface ocean may effectively sustain the respiratory carbon demands in this ultra-deep marine environment.

High functional diversity in deep-sea fish communities and increasing intraspecific trait variation with increasing latitude

Variation in both inter- and intraspecific traits affects community dynamics, yet we know little regarding the relative importance of external environmental filters versus internal biotic interactions that shape the functional space of communities along broad-scale environmental gradients, such as latitude, elevation, or depth. We examined changes in several key aspects of functional alpha diversity for marine fishes along depth and latitude gradients by quantifying intra- and interspecific richness, dispersion, and regularity in functional trait space. We derived eight functional traits related to food acquisition and locomotion and calculated seven complementary indices of functional diversity for 144 species of marine ray-finned fishes along large-scale depth (50-1200 m) and latitudinal gradients (29°-51° S) in New Zealand waters. Traits were derived from morphological measurements taken directly from footage obtained using Baited Remote Underwater Stereo-Video systems and museum specimens. We partitioned functional variation into intra- and interspecific components for the first time using a PERMANOVA approach. We also implemented two tree-based diversity metrics in a functional distance-based context for the first time: namely, the variance in pairwise functional distance and the variance in nearest neighbor distance. Functional alpha diversity increased with increasing depth and decreased with increasing latitude. More specifically, the dispersion and mean nearest neighbor distances among species in trait space and intraspecific trait variability all increased with depth, whereas functional hypervolume (richness) was stable across depth. In contrast, functional hypervolume, dispersion, and regularity indices all decreased with increasing latitude; however, intraspecific trait variation increased with latitude, suggesting that intraspecific trait variability becomes increasingly important at higher latitudes. These results suggest that competition within and among species are key processes shaping functional multidimensional space for fishes in the deep sea. Increasing morphological dissimilarity with increasing depth may facilitate niche partitioning to promote coexistence, whereas abiotic filtering may be the dominant process structuring communities with increasing latitude.

Deep-sea biodiversity at the extremes of the Salas y Gómez and Nazca ridges with implications for conservation

The Salas y Gómez and Nazca ridges are underwater mountain chains that stretch across 2,900 km in the southeastern Pacific and are recognized for their high biodiversity value and unique ecological characteristics. Explorations of deep-water ecosystems have been limited in this region, and elsewhere globally. To characterize community composition of mesophotic and deep-sea demersal fauna at seamounts in the region, we conducted expeditions to Rapa Nui (RN) and Salas y Gómez (SyG) islands in 2011 and Desventuradas Islands in 2013. Remote autonomous baited-cameras were used to conduct stationary video surveys between 150-1,850 m at RN/SyG (N = 20) and 75-2,363 m at Desventuradas (N = 27). Individual organisms were identified to the lowest possible taxonomic level and relative abundance was quantified with the maximum number of individuals per frame. Deployments were attributed with associated environmental variables (temperature, salinity, dissolved oxygen, nitrate, silicate, phosphate, chlorophyll-a, seamount age, and bathymetric position index [BPI]). We identified 55 unique invertebrate taxa and 66 unique fish taxa. Faunal community structure was highly dissimilar between and within subregions both for invertebrate (p < 0.001) and fish taxa (p = 0.022). For fishes, dogfish sharks (Squalidae) accounted for the greatest dissimilarity between subregions (18.27%), with mean abundances of 2.26 ± 2.49 at Desventuradas, an order of magnitude greater than at RN/SyG (0.21 ± 0.54). Depth, seamount age, broad-scale BPI, and nitrate explained most of the variation in both invertebrate (R2 = 0.475) and fish (R2 = 0.419) assemblages. Slightly more than half the deployments at Desventuradas (N = 14) recorded vulnerable marine ecosystem taxa such as corals and sponges. Our study supports mounting evidence that the Salas y Gómez and Nazca ridges are areas of high biodiversity and high conservation value. While Chile and Peru have recently established or proposed marine protected areas in this region, the majority of these ridges lie outside of national jurisdictions and are under threat from overfishing, plastic pollution, climate change, and potential deep-sea mining. Given its intrinsic value, this region should be comprehensively protected using the best available conservation measures to ensure that the Salas y Gómez and Nazca ridges remain a globally unique biodiversity hotspot.

Submarine Tailings in Chile—A Review

This review aims to understand the environmental impact that tailings produce on the land and marine ecosystem. Issues related to flora, fauna, and the environment are revised. In the first instance, the origin of the treatment and disposal of marine mining waste in Chile and other countries is studied. The importance of tailings’ valuable elements is analyzed through mineralogy, chemical composition, and oceanographic interactions. Several tailings’ treatments seek to recover valuable minerals and mitigate environmental impacts through leaching, bioleaching, and flotation methods. The analysis was complemented with the particular legislative framework for every country, highlighting those with formal regulations for the disposal of tailings in a marine environment. The available registry on flora and fauna affected by the discharge of toxic metals is explored. As a study case, the “Playa Verde” project is detailed, which recovers copper from marine tailings, and uses phytoremediation to neutralize toxic metals. Countries must regularize the disposal of marine tailings due to the significant impact on the marine ecosystem. The implementation of new technologies is necessary to recover valuable elements and reduce mining waste.

Compositional variability of Mg/Ca, Sr/Ca, and Na/Ca in the deep-sea bivalve Acesta excavata (Fabricius, 1779)

Acesta excavata (Fabricius, 1779) is a slow growing bivalve from the Limidae family and is often found associated with cold-water coral reefs along the European continental margin. Here we present the compositional variability of frequently used proxy elemental ratios (Mg/Ca, Sr/Ca, Na/Ca) measured by laser-ablation mass spectrometry (LA-ICP-MS) and compare it to in-situ recorded instrumental seawater parameters such as temperature and salinity. Shell Mg/Ca measured in the fibrous calcitic shell section was overall not correlated with seawater temperature or salinity; however, some samples show significant correlations with temperature with a sensitivity that was found to be unusually high in comparison to other marine organisms. Mg/Ca and Sr/Ca measured in the fibrous calcitic shell section display significant negative correlations with the linear extension rate of the shell, which indicates strong vital effects in these bivalves. Multiple linear regression analysis indicates that up to 79% of elemental variability is explicable with temperature and salinity as independent predictor values. Yet, the overall results clearly show that the application of Element/Ca (E/Ca) ratios in these bivalves to reconstruct past changes in temperature and salinity is likely to be complicated due to strong vital effects and the effects of organic material embedded in the shell. Therefore, we suggest to apply additional techniques, such as clumped isotopes, in order to exactly determine and quantify the underlying vital effects and possibly account for these. We found differences in the chemical composition between the two calcitic shell layers that are possibly explainable through differences of the crystal morphology. Sr/Ca ratios also appear to be partly controlled by the amount of magnesium, because the small magnesium ions bend the crystal lattice which increases the space for strontium incorporation. Oxidative cleaning with H₂O₂ did not significantly change the Mg/Ca and Sr/Ca composition of the shell. Na/Ca ratios decreased after the oxidative cleaning, which is most likely a leaching effect and not caused by the removal of organic matter.

Impacts of hypoxic events surpass those of future ocean warming and acidification

Over the past decades, three major challenges to marine life have emerged as a consequence of anthropogenic emissions: ocean warming, acidification and oxygen loss. While most experimental research has targeted the first two stressors, the last remains comparatively neglected. Here, we implemented sequential hierarchical mixed-model meta-analyses (721 control-treatment comparisons) to compare the impacts of oxygen conditions associated with the current and continuously intensifying hypoxic events (1-3.5 O₂ mg l^-1) with those experimentally yielded by ocean warming (+4 °C) and acidification (-0.4 units) conditions on the basis of IPCC projections (RCP 8.5) for 2100. In contrast to warming and acidification, hypoxic events elicited consistent negative effects relative to control biological performance-survival (-33%), abundance (-65%), development (-51%), metabolism (-33%), growth (-24%) and reproduction (-39%)-across the taxonomic groups (mollusks, crustaceans and fish), ontogenetic stages and climate regions studied. Our findings call for a refocus of global change experimental studies, integrating oxygen concentration drivers as a key factor of ocean change. Given potential combined effects, multistressor designs including gradual and extreme changes are further warranted to fully disclose the future impacts of ocean oxygen loss, warming and acidification.

Neural Network Approach to Retrieving Ocean Subsurface Temperatures from Surface Parameters Observed by Satellites

The extraction of physical information about the subsurface ocean from surface information obtained from satellite measurements is both important and challenging. We introduce a back-propagation neural network (BPNN) method to determine the subsurface temperature of the North Pacific Ocean by selecting the optimum input combination of sea surface parameters obtained from satellite measurements. In addition to sea surface height (SSH), sea surface temperature (SST), sea surface salinity (SSS) and sea surface wind (SSW), we also included the sea surface velocity (SSV) as a new component in our study. This allowed us to partially resolve the non-linear subsurface dynamics associated with advection, which improved the estimated results, especially in regions with strong currents. The accuracy of the estimated results was verified with reprocessed observational datasets. Our results show that the BPNN model can accurately estimate the subsurface (upper 1000 m) temperature of the North Pacific Ocean. The corresponding mean square errors were 0.868 and 0.802 using four (SSH, SST, SSS and SSW) and five (SSH, SST, SSS, SSW and SSV) input parameters and the average coefficients of determination were 0.952 and 0.967, respectively. The input of the SSV in addition to the SSH, SST, SSS and SSW therefore has a positive impact on the BPNN model and helps to improve the accuracy of the estimation. This study provides important technical support for retrieving thermal information about the ocean interior from surface satellite remote sensing observations, which will help to expand the scope of satellite measurements of the ocean.

Discovery of a colossal slickhead (Alepocephaliformes: Alepocephalidae): an active-swimming top predator in the deep waters of Suruga Bay, Japan

A novel species of the family Alepocephalidae (slickheads), Narcetes shonanmaruae, is described based on four specimens collected at depths greater than 2171 m in Suruga Bay, Japan. Compared to other alepocephalids, this species is colossal (reaching ca. 140 cm in total length and 25 kg in body weight) and possesses a unique combination of morphological characters comprising anal fin entirely behind the dorsal fin, multiserial teeth on jaws, more scale rows than congeners, precaudal vertebrae less than 30, seven branchiostegal rays, two epurals, and head smaller than those of relatives. Mitogenomic analyses also support the novelty of this large deep-sea slickhead. Although most slickheads are benthopelagic or mesopelagic feeders of gelatinous zooplankton, behavioural observations and dietary analyses indicate that the new species is piscivorous. In addition, a stable nitrogen isotope analysis of specific amino acids showed that N. shonanmaruae occupies one of the highest trophic positions reported from marine environments to date. Video footage recorded using a baited camera deployed at a depth of 2572 m in Suruga Bay revealed the active swimming behaviour of this slickhead. The scavenging ability and broad gape of N. shonanmaruae might be correlated with its colossal body size and relatively high trophic position.

Climate-driven deoxygenation elevates fishing vulnerability for the ocean's widest ranging shark

Climate-driven expansions of ocean hypoxic zones are predicted to concentrate pelagic fish in oxygenated surface layers, but how expanding hypoxia and fisheries will interact to affect threatened pelagic sharks remains unknown. Here, analysis of satellite-tracked blue sharks and environmental modelling in the eastern tropical Atlantic oxygen minimum zone (OMZ) shows shark maximum dive depths decreased due to combined effects of decreasing dissolved oxygen (DO) at depth, high sea surface temperatures, and increased surface-layer net primary production. Multiple factors associated with climate-driven deoxygenation contributed to blue shark vertical habitat compression, potentially increasing their vulnerability to surface fisheries. Greater intensity of longline fishing effort occurred above the OMZ compared to adjacent waters. Higher shark catches were associated with strong DO gradients, suggesting potential aggregation along suitable DO gradients contributed to habitat compression and higher fishing-induced mortality. Fisheries controls to counteract deoxygenation effects on shark catches will be needed as oceans continue warming.

In situ observations show vertical community structure of pelagic fauna in the eastern tropical North Atlantic off Cape Verde

Distribution patterns of fragile gelatinous fauna in the open ocean remain scarcely documented. Using epi-and mesopelagic video transects in the eastern tropical North Atlantic, which features a mild but intensifying midwater oxygen minimum zone (OMZ), we established one of the first regional observations of diversity and abundance of large gelatinous zooplankton. We quantified the day and night vertical distribution of 46 taxa in relation to environmental conditions. While distribution may be driven by multiple factors, abundance peaks of individual taxa were observed in the OMZ core, both above and below the OMZ, only above, or only below the OMZ whereas some taxa did not have an obvious distribution pattern. In the eastern eropical North Atlantic, OMZ expansion in the course of global climate change may detrimentally impact taxa that avoid low oxygen concentrations (Beroe, doliolids), but favour taxa that occur in the OMZ (Lilyopsis, phaeodarians, Cydippida, Colobonema, Haliscera conica and Halitrephes) as their habitat volume might increase. While future efforts need to focus on physiology and taxonomy of pelagic fauna in the study region, our study presents biodiversity and distribution data for the regional epi- and mesopelagic zones of Cape Verde providing a regional baseline to monitor how climate change may impact the largest habitat on the planet, the deep pelagic realm.