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For: Hoshika S, Leal NA, Kim MJ, Kim MS, Karalkar NB, Kim HJ, Bates AM, Watkins NE, SantaLucia HA, Meyer AJ, DasGupta S, Piccirilli JA, Ellington AD, SantaLucia J, Georgiadis MM, Benner SA. Hachimoji DNA and RNA: A genetic system with eight building blocks. Science 2019;363:884-887. [PMID: 30792304 DOI: 10.1126/science.aat0971] [Citation(s) in RCA: 305] [Impact Index Per Article: 50.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2018] [Revised: 09/25/2018] [Accepted: 01/31/2019] [Indexed: 12/20/2022]
Number Cited by Other Article(s)
1
Bizat PN, Sabat N, Hollenstein M. Recent Advances in Biocatalytic and Chemoenzymatic Synthesis of Oligonucleotides. Chembiochem 2025;26:e202400987. [PMID: 39854143 DOI: 10.1002/cbic.202400987] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 01/16/2025] [Accepted: 01/24/2025] [Indexed: 01/26/2025]
2
Pant S, Jena NR. Computational predictions of artificial nucleoside triphosphates as potent inhibitors of RNA-dependent RNA polymerase of the ZIKA virus. Hum Immunol 2025;86:111286. [PMID: 40117673 DOI: 10.1016/j.humimm.2025.111286] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2024] [Revised: 03/07/2025] [Accepted: 03/08/2025] [Indexed: 03/23/2025]
3
Huang X, Hou Z, Qiang W, Wang H, Wang X, Chen X, Hu X, Dai J, Li L, Zhao G. Towards next-generation DNA encryption via an expanded genetic system. Natl Sci Rev 2025;12:nwae469. [PMID: 40160677 PMCID: PMC11951100 DOI: 10.1093/nsr/nwae469] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2024] [Revised: 11/22/2024] [Accepted: 12/12/2024] [Indexed: 04/02/2025]  Open
4
Kawabe H, Manfio L, Magana Pena S, Zhou NA, Bradley KM, Chen C, McLendon C, Benner SA, Levy K, Yang Z, Marchand JA, Fuhrmeister ER. Harnessing Non-standard Nucleic Acids for Highly Sensitive Icosaplex (20-Plex) Detection of Microbial Threats for Environmental Surveillance. ACS Synth Biol 2025;14:470-484. [PMID: 39898969 PMCID: PMC11854376 DOI: 10.1021/acssynbio.4c00619] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2024] [Revised: 01/13/2025] [Accepted: 01/17/2025] [Indexed: 02/04/2025]
5
Shaker S, Li J, Wan S, Xuan H, Long J, Cao H, Wei T, Liu Q, Xu D, Benner S, Zhang L. Cancer cell target discovery: comparing laboratory evolution of expanded DNA six-nucleotide alphabets with standard four-nucleotide alphabets. Nucleic Acids Res 2025;53:gkaf072. [PMID: 39950344 PMCID: PMC11826092 DOI: 10.1093/nar/gkaf072] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 01/07/2025] [Accepted: 01/29/2025] [Indexed: 02/17/2025]  Open
6
Mao Y, Zhao Y, Zhou Q, Li W. Chromosome Engineering: Technologies, Applications, and Challenges. Annu Rev Anim Biosci 2025;13:25-47. [PMID: 39541223 DOI: 10.1146/annurev-animal-111523-102225] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
7
Liu D, Xu D, Shi L, Zhang J, Bi K, Luo B, Liu C, Li Y, Fan G, Wang W, Ping Z. A practical DNA data storage using an expanded alphabet introducing 5-methylcytosine. GIGABYTE 2025;2025:gigabyte147. [PMID: 39906332 PMCID: PMC11791762 DOI: 10.46471/gigabyte.147] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2024] [Accepted: 01/15/2025] [Indexed: 02/06/2025]  Open
8
Blackstock C, Walters-Freke C, Richards N, Williamson A. Nucleic acid joining enzymes: biological functions and synthetic applications beyond DNA. Biochem J 2025;482:39-56. [PMID: 39840831 DOI: 10.1042/bcj20240136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Revised: 11/21/2024] [Accepted: 12/04/2024] [Indexed: 01/23/2025]
9
Gu R, Lambertsen Larsen K, Wang A, Tan J. Approaching Dynamic Behaviors of Life through Systems Chemistry. Chemistry 2025;31:e202403083. [PMID: 39485372 DOI: 10.1002/chem.202403083] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2024] [Revised: 10/20/2024] [Accepted: 10/30/2024] [Indexed: 11/03/2024]
10
Kompatscher M, Gonnella I, Erlacher M. Studying the Function of tRNA Modifications: Experimental Challenges and Opportunities. J Mol Biol 2025:168934. [PMID: 39756793 DOI: 10.1016/j.jmb.2024.168934] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2024] [Revised: 12/19/2024] [Accepted: 12/31/2024] [Indexed: 01/07/2025]
11
Ward AJ, Partridge BE. Beyond DAD: proposing a one-letter code for nucleobase-mediated molecular recognition. J Mater Chem B 2025;13:485-495. [PMID: 39569673 DOI: 10.1039/d4tb01999g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2024]
12
Wang B, Kim HJ, Bradley KM, Chen C, McLendon C, Yang Z, Benner SA. Joining Natural and Synthetic DNA Using Biversal Nucleotides: Efficient Sequencing of Six-Nucleotide DNA. J Am Chem Soc 2024;146:35129-35138. [PMID: 39625448 DOI: 10.1021/jacs.4c11043] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2024]
13
Babar V, Sharma S, Shaikh AR, Oliva R, Chawla M, Cavallo L. Sensing Hachimoji DNA Bases with Janus MoSH Monolayer Nanodevice: Insights from Density Functional Theory (DFT) and Non-Equilibrium Green's Function Analysis. ACS OMEGA 2024;9:48173-48184. [PMID: 39676917 PMCID: PMC11635677 DOI: 10.1021/acsomega.4c05356] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 11/14/2024] [Accepted: 11/19/2024] [Indexed: 12/17/2024]
14
Fallah A, Imani Fooladi AA, Havaei SA, Mahboobi M, Sedighian H. Recent advances in aptamer discovery, modification and improving performance. Biochem Biophys Rep 2024;40:101852. [PMID: 39525567 PMCID: PMC11546948 DOI: 10.1016/j.bbrep.2024.101852] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2024] [Revised: 10/06/2024] [Accepted: 10/16/2024] [Indexed: 11/16/2024]  Open
15
Xiong Q, Wang P, Ma C, Law ATK, Wang M, Kwok WM. Superior Photostability of the Unnatural Base 6-Amino-5-nitropyridin-2-ol: A Case Study Using Ultrafast Broadband Fluorescence, Transient Absorption, and Theoretical Computation. J Phys Chem Lett 2024;15:11553-11561. [PMID: 39526600 DOI: 10.1021/acs.jpclett.4c02751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2024]
16
Cui X, Fan J, Gao Y, Zhou X, Zhang C, Meng Q. Designing Quasi-Intrinsic Photosensitizers with Dual Function of Fluorescence Imaging and Photodynamic Therapy. J Med Chem 2024;67:19826-19836. [PMID: 39485727 DOI: 10.1021/acs.jmedchem.4c02213] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2024]
17
Costello A, Peterson AA, Chen PH, Bagirzadeh R, Lanster DL, Badran AH. Genetic Code Expansion History and Modern Innovations. Chem Rev 2024;124:11962-12005. [PMID: 39466033 DOI: 10.1021/acs.chemrev.4c00275] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/29/2024]
18
Vecchioni S, Ohayon YP, Hernandez C, Hoshika S, Mao C, Benner SA, Sha R. Six-Letter DNA Nanotechnology: Incorporation of Z-P Base Pairs into Self-Assembling 3D Crystals. NANO LETTERS 2024;24:14302-14306. [PMID: 39471314 PMCID: PMC11566107 DOI: 10.1021/acs.nanolett.4c03949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 10/25/2024] [Accepted: 10/25/2024] [Indexed: 11/01/2024]
19
Esposito J, Kakar J, Khokhar T, Noll-Walker T, Omar F, Christen A, James Cleaves H, Sandora M. Comparing the complexity of written and molecular symbolic systems. Biosystems 2024;244:105297. [PMID: 39154841 DOI: 10.1016/j.biosystems.2024.105297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 08/11/2024] [Accepted: 08/11/2024] [Indexed: 08/20/2024]
20
Wang H, Tie W, Zhu W, Wang S, Zhang R, Duan J, Ye B, Zhu A, Li L. Recognition and Sequencing of Mutagenic DNA Adduct at Single-Base Resolution Through Unnatural Base Pair. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024;11:e2404622. [PMID: 39225557 PMCID: PMC11515917 DOI: 10.1002/advs.202404622] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 08/06/2024] [Indexed: 09/04/2024]
21
Jann C, Giofré S, Bhattacharjee R, Lemke EA. Cracking the Code: Reprogramming the Genetic Script in Prokaryotes and Eukaryotes to Harness the Power of Noncanonical Amino Acids. Chem Rev 2024;124:10281-10362. [PMID: 39120726 PMCID: PMC11441406 DOI: 10.1021/acs.chemrev.3c00878] [Citation(s) in RCA: 16] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2023] [Revised: 06/10/2024] [Accepted: 06/27/2024] [Indexed: 08/10/2024]
22
Le AV, Hartman MCT. Improved synthesis of the unnatural base NaM, and evaluation of its orthogonality in in vitro transcription and translation. RSC Chem Biol 2024;5:d4cb00121d. [PMID: 39279876 PMCID: PMC11389374 DOI: 10.1039/d4cb00121d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Accepted: 09/04/2024] [Indexed: 09/18/2024]  Open
23
Stanisavljević A, Aleksić J, Stojanović M, Baranac-Stojanović M. Solid-state synthesis of polyfunctionalized 2-pyridones and conjugated dienes. Org Biomol Chem 2024;22:7218-7230. [PMID: 39163014 DOI: 10.1039/d4ob00902a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/21/2024]
24
Wong TF. Triphasic Development of the Genetic Code. Chem Rev 2024;124:9866-9872. [PMID: 39088192 PMCID: PMC11393795 DOI: 10.1021/acs.chemrev.3c00915] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/02/2024]
25
Kawabe H, Manfio L, Pena SM, Zhou NA, Bradley KM, Chen C, McLendon C, Benner SA, Levy K, Yang Z, Marchand JA, Fuhrmeister ER. Harnessing non-standard nucleic acids for highly sensitive icosaplex (20-plex) detection of microbial threats. MEDRXIV : THE PREPRINT SERVER FOR HEALTH SCIENCES 2024:2024.09.09.24313328. [PMID: 39314929 PMCID: PMC11419210 DOI: 10.1101/2024.09.09.24313328] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 09/25/2024]
26
Gómez-Tatay L, Hernández-Andreu JM. Xenobiology for the Biocontainment of Synthetic Organisms: Opportunities and Challenges. Life (Basel) 2024;14:996. [PMID: 39202738 PMCID: PMC11355180 DOI: 10.3390/life14080996] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 08/07/2024] [Accepted: 08/09/2024] [Indexed: 09/03/2024]  Open
27
Cui X, Fan J, Lyu Y, Zhou X, Meng Q, Zhang C. Quasi-intrinsic thiobase derivatives as potential targeted photosensitizers in two-photon photodynamic therapy. SPECTROCHIMICA ACTA. PART A, MOLECULAR AND BIOMOLECULAR SPECTROSCOPY 2024;316:124311. [PMID: 38663131 DOI: 10.1016/j.saa.2024.124311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/14/2024] [Revised: 04/08/2024] [Accepted: 04/17/2024] [Indexed: 05/15/2024]
28
Kehrli J, Husser C, Ryckelynck M. Fluorogenic RNA-Based Biosensors of Small Molecules: Current Developments, Uses, and Perspectives. BIOSENSORS 2024;14:376. [PMID: 39194605 DOI: 10.3390/bios14080376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2024] [Revised: 07/14/2024] [Accepted: 07/19/2024] [Indexed: 08/29/2024]
29
Wei K, Ye Z, Dong W, Zhang L, Wang W, Li J, Eltzov E, Wang S, Mao X. Generating robust aptamers for food analysis by sequence-based configuration optimization. Talanta 2024;275:126044. [PMID: 38626500 DOI: 10.1016/j.talanta.2024.126044] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 04/01/2024] [Accepted: 04/02/2024] [Indexed: 04/18/2024]
30
Fayaz F, Ganie MA, Kumar S, Raheem S, Rizvi MA, Shah BA. Modular access to sulfur substituted analogues of isocytosine via photoredox catalysis. Chem Commun (Camb) 2024;60:8256-8259. [PMID: 39011863 DOI: 10.1039/d4cc02076f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/17/2024]
31
Dou C, Yang Y, Zhu F, Li B, Duan Y. Explorer: efficient DNA coding by De Bruijn graph toward arbitrary local and global biochemical constraints. Brief Bioinform 2024;25:bbae363. [PMID: 39073829 DOI: 10.1093/bib/bbae363] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 06/25/2024] [Accepted: 07/13/2024] [Indexed: 07/30/2024]  Open
32
Smith D, Thomas C, Craig J, Brinkerhoff H, Abell S, Franzi M, Carrasco J, Hoshika S, Benner S, Gundlach J, Laszlo A. Nanopores map the acid-base properties of a single site in a single DNA molecule. Nucleic Acids Res 2024;52:7429-7436. [PMID: 38884270 PMCID: PMC11260478 DOI: 10.1093/nar/gkae518] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2024] [Revised: 05/31/2024] [Accepted: 06/04/2024] [Indexed: 06/18/2024]  Open
33
Cui X, Yuan H, Chen X, Meng Q, Zhang C. Newly Designed Quasi-intrinsic Photosensitizers for Fluorescence Image-Guided Two-Photon Photodynamic Therapy with Type I/II Photoreactions. J Med Chem 2024;67:8902-8912. [PMID: 38815214 DOI: 10.1021/acs.jmedchem.4c00191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/01/2024]
34
Sigal M, Matsumoto S, Beattie A, Katoh T, Suga H. Engineering tRNAs for the Ribosomal Translation of Non-proteinogenic Monomers. Chem Rev 2024;124:6444-6500. [PMID: 38688034 PMCID: PMC11122139 DOI: 10.1021/acs.chemrev.3c00894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 02/21/2024] [Accepted: 04/10/2024] [Indexed: 05/02/2024]
35
Wang B, Bradley KM, Kim MJ, Laos R, Chen C, Gerloff DL, Manfio L, Yang Z, Benner SA. Enzyme-assisted high throughput sequencing of an expanded genetic alphabet at single base resolution. Nat Commun 2024;15:4057. [PMID: 38744910 PMCID: PMC11094070 DOI: 10.1038/s41467-024-48408-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 04/29/2024] [Indexed: 05/16/2024]  Open
36
Gómez-Márquez J. The Lithbea Domain. Adv Biol (Weinh) 2024;8:e2300679. [PMID: 38386280 DOI: 10.1002/adbi.202300679] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Revised: 02/09/2024] [Indexed: 02/23/2024]
37
Babar V, Sharma S, Shaikh AR, Oliva R, Chawla M, Cavallo L. Detecting Hachimoji DNA: An Eight-Building-Block Genetic System with MoS2 and Janus MoSSe Monolayers. ACS APPLIED MATERIALS & INTERFACES 2024;16:21427-21437. [PMID: 38634539 PMCID: PMC11071042 DOI: 10.1021/acsami.3c18400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/08/2023] [Revised: 04/03/2024] [Accepted: 04/09/2024] [Indexed: 04/19/2024]
38
Sawant AA, Tripathi S, Galande S, Rajamani S. A Prebiotic Genetic Nucleotide as an Early Darwinian Ancestor for Pre-RNA Evolution. ACS OMEGA 2024;9:18072-18082. [PMID: 38680342 PMCID: PMC11044211 DOI: 10.1021/acsomega.3c09949] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/13/2023] [Revised: 03/22/2024] [Accepted: 03/29/2024] [Indexed: 05/01/2024]
39
Rothschild LJ, Averesch NJH, Strychalski EA, Moser F, Glass JI, Cruz Perez R, Yekinni IO, Rothschild-Mancinelli B, Roberts Kingman GA, Wu F, Waeterschoot J, Ioannou IA, Jewett MC, Liu AP, Noireaux V, Sorenson C, Adamala KP. Building Synthetic Cells─From the Technology Infrastructure to Cellular Entities. ACS Synth Biol 2024;13:974-997. [PMID: 38530077 PMCID: PMC11037263 DOI: 10.1021/acssynbio.3c00724] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2023] [Revised: 02/01/2024] [Accepted: 02/06/2024] [Indexed: 03/27/2024]
40
Tiwari G, Mishra VK, Khanna A, Tyagi R, Sagar R. Synthesis of Chirally Enriched Pyrazolylpyrimidinone-Based Glycohybrids via Annulation of Glycals with 2-Hydrazineylpyrimidin-4(3H)-ones. J Org Chem 2024;89:5000-5009. [PMID: 38471017 DOI: 10.1021/acs.joc.4c00211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2024]
41
Tan HP, Kimoto M, Hirao I. Advancing Genetic Alphabet Expansion: Synthesis of 7-(2-Thienyl)-Imidazo[4,5-b]pyridine (Ds) and 4-(4-Pentyne-1,2-diol)-1-Propynyl-2-Nitropyrrole (Diol-Px) for Use in Replicable Unnatural Base Pairs for PCR Applications. Curr Protoc 2024;4:e1009. [PMID: 38572677 DOI: 10.1002/cpz1.1009] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/05/2024]
42
Depmeier H, Kath-Schorr S. Expanding the Horizon of the Xeno Nucleic Acid Space: Threose Nucleic Acids with Increased Information Storage. J Am Chem Soc 2024;146:7743-7751. [PMID: 38442021 DOI: 10.1021/jacs.3c14626] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/07/2024]
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Crespo-Hernández CE. Special issue on nucleic acid photophysics. Photochem Photobiol 2024;100:257-261. [PMID: 38501585 DOI: 10.1111/php.13923] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 02/02/2024] [Accepted: 02/03/2024] [Indexed: 03/20/2024]
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Yang S, Bögels BWA, Wang F, Xu C, Dou H, Mann S, Fan C, de Greef TFA. DNA as a universal chemical substrate for computing and data storage. Nat Rev Chem 2024;8:179-194. [PMID: 38337008 DOI: 10.1038/s41570-024-00576-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/10/2024] [Indexed: 02/12/2024]
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Ma C, Xiong Q, Lin J, Wong AKW, Wang M, Kwok WM. Ultrafast excited state dynamics of isocytosine unveiled by femtosecond broadband time-resolved spectroscopy combined with density functional theoretical study. Photochem Photobiol 2024;100:355-367. [PMID: 37688287 DOI: 10.1111/php.13849] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Revised: 08/12/2023] [Accepted: 08/14/2023] [Indexed: 09/10/2023]
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Grefenstette N, Chou L, Colón-Santos S, Fisher TM, Mierzejewski V, Nural C, Sinhadc P, Vidaurri M, Vincent L, Weng MM. Chapter 9: Life as We Don't Know It. ASTROBIOLOGY 2024;24:S186-S201. [PMID: 38498819 DOI: 10.1089/ast.2021.0103] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/20/2024]
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Debnath T, Cisneros GA. Investigation of the stability of D5SIC-DNAM-incorporated DNA duplex in Taq polymerase binary system: a systematic classical MD approach. Phys Chem Chem Phys 2024;26:7287-7295. [PMID: 38353000 PMCID: PMC11078294 DOI: 10.1039/d3cp05571j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
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Debnath T, Cisneros GA. Investigation of dynamical flexibility of D5SIC-DNAM inside DNA duplex in aqueous solution: a systematic classical MD approach. Phys Chem Chem Phys 2024;26:7435-7445. [PMID: 38353005 PMCID: PMC11080001 DOI: 10.1039/d3cp05572h] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/29/2024]
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Wang S, Mao X, Wang F, Zuo X, Fan C. Data Storage Using DNA. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024;36:e2307499. [PMID: 37800877 DOI: 10.1002/adma.202307499] [Citation(s) in RCA: 21] [Impact Index Per Article: 21.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/27/2023] [Revised: 10/01/2023] [Indexed: 10/07/2023]
50
Ma C, Xiong Q, Lin J, Zeng X, Wang M, Kwok WM. Is 1-methylcytosine a faithful model compound for ultrafast deactivation dynamics of cytosine nucleosides in solution? Phys Chem Chem Phys 2024;26:2963-2972. [PMID: 38214513 DOI: 10.1039/d3cp05509d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2024]
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