Differential associations of five riverine organism groups with multiple stressors

The decline of river and stream biodiversity results from multiple simultaneous occuring stressors, yet few studies explore responses explore responses across various taxonomic groups at the same locations. In this study, we address this shortcoming by using a coherent data set to study the association of nine commonly occurring stressors (five chemical, one morphological and three hydraulic) with five taxonomic groups (bacteria, fungi, diatoms, macro-invertebrates and fish). According to studies on single taxonomic groups, we hypothesise that gradients of chemical stressors structure community composition of all taxonomic groups, while gradients of hydraulic and morphological stressors are mainly related to larger organisms such as benthic macro-invertebrates and fish. Organisms were sampled over two years at 20 sites in two catchments: a recently restored urban lowland catchment (Boye) and a moderately disturbed rural mountainous catchment (Kinzig). Dissimilarity matrices were computed for each taxonomic group within a catchment. Taxonomic dissimilarities between sites were linked to stressor dissimilarities using multivariable Generalized Linear Mixed Models. Stressor gradients were longer in the Boye, but did in contrast to the Kinzig not cover low stress intensities. Accordingly, responses of the taxonomic groups were stronger in the Kinzig catchment than in the recently restored Boye catchment. The discrepancy between catchments underlines that associations to stressors strongly depend on which part of the stressor gradient is covered in a catchment. All taxonomic groups were related to conductivity. Bacteria, fungi and macro-invertebrates change with dissolved oxygen, and bacteria and fungi with total nitrogen. Morphological and hydraulic stressors had minor correlations with bacteria, fungi and diatoms, while macro-invertebrates were strongly related to fine sediment and discharge, and fish to high flow peaks. The results partly support our hypotheses about the differential associations of the different taxonomic groups with the stressors.

Response of underwater photosynthesis to light, CO2, temperature, and submergence time of Taxodium distichum, a flood-tolerant tree

Introduction

Partial or complete submergence of trees can occur in natural wetlands during times of high waters, but the submergence events have increased in severity and frequency over the past decades. Taxodium distichum is well-known for its waterlogging tolerance, but there are also numerous observations of this species becoming partially or complete submerged for longer periods of time. Consequently, the aims of the present study were to characterize underwater net photosynthesis (PN) and leaf anatomy of T. distichum with time of submergence.

Methods

We completely submerged 6 months old seedling of T. distichum and diagnosed underwater (PN), hydrophobicity, gas film thickness, Chlorophyll concentration and needles anatomy at discrete time points during a 30-day submergence event. We also constructed response curves of underwater PN to CO2, light and temperature.

Results

During the 30-day submergence period, no growth or formation new leaves were observed, and therefore T. distichum shows a quiescence response to submergence. The hydrophobicity of the needles declined during the submergence event resulting in complete loss of gas films. However, the Chlorophyll concentration of the needles also declined significantly, and it was there not possible to identify the main cause of the corresponding significant decline in underwater PN. Nevertheless, even after 30 days of complete submergence, the needles still retained some capacity for underwater photosynthesis under optimal light and CO2 conditions.

Discussion

However, to fully understand the stunning submergence tolerance of T. distichum, we propose that future research concentrate on unravelling the finer details in needle anatomy and biochemistry as these changes occur during submergence.

Response of a submerged macrophyte (Vallisneria natans) to water depth gradients and sediment nutrient concentrations

Submerged plants constitute a vital component of shallow lake ecosystems, where water depth and sediment nitrogen‑phosphorus content are two key factors influencing their growth. This study focuses on Vallisneria natans and investigates the morphological and physiological changes of V. natans under the interaction of three water depth gradients and two different sediment nutrient levels. It explores the mechanisms through which varying sediment nutrient conditions under different water depths affect the growth of V. natans. The results indicate that both independent and interactive effects of water depth and sediment nutrient status significantly impact the morphology, antioxidant enzyme activity, and photosynthetic pigment content of V. natans, with water depth having a greater influence. To adapt to increased water depth-induced light stress, V. natans responds morphologically by increasing leaf length, leaf width, and decreasing maximum root length. Physiologically, it enhances its antioxidant regulation capacity and photosynthetic efficiency by increasing antioxidant enzyme activity, root vitality, and photosynthetic pigment content to counter weak light stress. However, these adaptations are insufficient to cope with excessively deep waters (200 cm). Sediment nutrient levels primarily control the growth of V. natans by affecting its root system. When sediment nitrogen and phosphorus content is lower, V. natans exhibits greater total root volume and surface area to enhance nutrient absorption efficiency. Water depth not only directly influences the growth of submerged plants but may also impact the migration and transformation of phosphorus in sediments, further exacerbating its effects on the growth of these plants, thus accelerating the regime shift of shallow lakes. Therefore, this study reveals V. natans' response strategies to varying water depths and sediment nutrient levels, determining suitable water levels and sediment nutrient conditions for its growth. These research findings provide a scientific basis for water level management and ecological restoration of submerged aquatic plants in shallow lakes.

Red light alleviates Cd toxicity in Egeria densa by modifying carbon-nitrogen metabolism and boosting energy metabolism

Among the various pollutants detected in aquatic ecosystems, cadmium (Cd) is considered as one of the most hazardous. Freshwater macrophytes have been recognized as possible candidates for eliminating Cd from environment. Nevertheless, the impact of light quality on their ability to tolerate Cd toxicity remains unclear, and the underlying mechanisms have yet to be fully elucidated. In this study, we utilized physiological testing and metabolomics to explore the potential mechanisms by which light quality influences the ability of Egeria densa, a significant Cd hyperaccumulator, to withstand Cd toxicity. The study demonstrated that following Cd treatment, E. densa grown under red light exhibited superior photosynthetic efficiency compared to those grown under blue light, as evidenced by significantly increased photosynthetic rate, higher starch content, and greater activity of photosynthetic enzymes. Moreover, metabolomic analyses revealed that under Cd stress, E. densa grown under red light exhibited an enhanced glycolysis for increased energy production. Sucrose metabolism was also improved to generate sufficient sugar including glucose, fructose and mannose for osmotic adjustment. Moreover, under red light, the heightened production of α-ketoglutarate via tricarboxylic acid (TCA) cycle redirected nitrogen flow towards the synthesis of resilient substances such as γ-Aminobutyric Acid (GABA) and methionine. The production of these substances was ∼2.0 and 1.3 times greater than that of treatment with Cd under blue light, thereby improving E. densa's capacity to withstand Cd stress. This study represents the initial investigation into the possible mechanisms by which light quality influences the ability of E. densa to withstand Cd toxicity through regulating CN metabolism. Furthermore, these findings have the potential to improve phytoremediation strategies aimed at reducing Cd pollution.

Unveiling novel perspectives on niche differentiation and plasticity in rhizosphere phosphorus forms of submerged macrophytes with different stoichiometric homeostasis

Stoichiometric homeostasis is the ability of organisms to maintain their element composition through various physiological mechanisms, regardless of changes in nutrient availability. Phosphorus (P) is a critical limiting element for eutrophication. Submerged macrophytes with different stoichiometric homeostasis regulated sediment P pollution by nutrient resorption, but whether and how P homeostasis and resorption in submerged macrophytes changed under variable plant community structure was unclear. Increasing evidence suggests that rhizosphere microbes drive niche overlap and differentiation for different P forms to constitute submerged macrophyte community structure. However, a greater understanding of how this occurs is required. This study examined the process underlying the metabolism of different rhizosphere P forms of submerged macrophytes under different cultivation patterns by analyzing physicochemical data, basic plant traits, microbial communities, and transcriptomics. The results indicate that alkaline phosphatase serves as a key factor in revealing the existence of a link between plant traits (path coefficient = 0.335, p < 0.05) and interactions with rhizosphere microbial communities (average path coefficient = 0.362, p < 0.05). Moreover, this study demonstrates that microbial communities further influence the niche plasticity of P by mediating plant root P metabolism genes (path coefficient = 0.354, p < 0.05) and rhizosphere microbial phosphorus storage (average path coefficient = 0.605, p < 0.01). This research not only contributes to a deeper comprehension of stoichiometric homeostasis and nutrient dynamics but also provides valuable insights into potential strategies for managing and restoring submerged macrophyte-dominated ecosystems in the face of changing nutrient conditions.

European river typologies fail to capture diatom, fish, and macrophyte community composition

Typology systems are frequently used in applied and fundamental ecology and are relevant for environmental monitoring and conservation. They aggregate ecosystems into discrete types based on biotic and abiotic variables, assuming that ecosystems of the same type are more alike than ecosystems of different types with regard to a specific property of interest. We evaluated whether this assumption is met by the Broad River Types (BRT), a recently proposed European river typology system, that classifies river segments based on abiotic variables, when it is used to group biological communities. We compiled data on the community composition of diatoms, fishes, and aquatic macrophytes throughout Europe and evaluated whether the composition is more similar in site groups with the same river type than in site groups of different river types using analysis of similarities, classification strength, typical species analysis, and the area under zeta diversity decline curves. We compared the performance of the BRT with those of four region-based typology systems, namely, Illies Freshwater Ecoregions, the Biogeographic Regions, the Freshwater Ecoregions of the World, and the Environmental Zones, as well as spatial autocorrelation (SA) classifications. All typology systems received low scores from most evaluation methods, relative to predefined thresholds and the SA classifications. The BRT often scored lowest of all typology systems. Within each typology system, community composition overlapped considerably between site groups defined by the types of the systems. The overlap tended to be the lowest for fishes and between Illies Freshwater Ecoregions. In conclusion, we found that existing broad-scale river typology systems fail to delineate site groups with distinct and compositionally homogeneous communities of diatoms, fishes, and macrophytes. A way to improve the fit between typology systems and biological communities might be to combine segment-based and region-based typology systems to simultaneously account for local environmental variation and historical distribution patterns, thus potentially improving the utility of broad-scale typology systems for freshwater biota.

Blue Light Enhances Cadmium Tolerance of the Aquatic Macrophyte Potamogeton crispus

Cadmium (Cd) is highly toxic and widely distributed in aquatic systems due to its high solubility and mobility in water, which can severely inhibit the survival of aquatic macrophytes. The phytotoxicity of Cd depends on environmental factors; however, it remains unclear whether and how light quality affects its toxicity on aquatic macrophytes. In this study, we investigated the effects of Cd on aquatic macrophytes Potamogeton crispus under different light qualities (white, blue, and red light). We evaluated morphological and photo-physiological traits, as well as the cellular antioxidant defense system. Our findings indicate that P. crispus under Cd stress showed notable damage in leaf morphology, decreased photosynthetic efficiency, inhibited HCO₃^- uptake, and reduced antioxidant enzyme activities, as well as oxidative damage indicated by MDA accumulation and superoxide (O₂^-) overproduction. However, compared with white or red light under Cd stress, blue light reduced structural damage and oxidative stress caused by Cd while increasing pigment synthesis and photosynthetic efficiency, as well as increasing ascorbate peroxidase (APX) activity. In conclusion, the changes induced by blue light in P. crispus's photosynthesis and antioxidant system strengthen its tolerance to Cd. Further research on signal transmission in relation to light quality in Cd-exposed aquatic plants is still needed.

Global change and plant-ecosystem functioning in freshwaters

Freshwater ecosystems are of worldwide importance for maintaining biodiversity and sustaining the provision of a myriad of ecosystem services to modern societies. Plants, one of the most important components of these ecosystems, are key to water nutrient removal, carbon storage, and food provision. Understanding how the functional connection between freshwater plants and ecosystems is affected by global change will be key to our ability to predict future changes in freshwater systems. Here, we synthesize global plant responses, adaptations, and feedbacks to present-day and future freshwater environments through trait-based approaches, from single individuals to entire communities. We outline the transdisciplinary knowledge benchmarks needed to further understand freshwater plant biodiversity and the fundamental services they provide.

Different photosynthetic inorganic carbon utilization strategies in the heteroblastic leaves of an aquatic plant Ottelia ovalifolia

The leaves of the heteroblastic aquatic plant Ottelia ovalifolia faces submerged and aerial environments during its life history. However, the acclimation of the submerged leaves and floating leaves to these two environments in morphology, physiology, and biochemistry remain unclear. In the present study, we investigated the acclimation of the CO₂-concentrating mechanisms in these two types of leaves. We found that the submerged leaves were longer, narrower, and thinner than the floating leaves, which increased the specific surface area of the leaves and lead to better absorption of the inorganic carbon underwater. Meanwhile, the floating leaves absorbed atmospheric CO₂ directly through the stomata to acclimate to the aerial environment. Both the leaf types had the ability to use HCO 3 - , but the capacity in submerged leaves was stronger than that in floating leaves. The extracellular carbonic anhydrase and anion exchanger were responsible for the HCO 3 - use in both types of leaves. The higher ratio of chlorophyll a/b and content of anthocyanin in floating leaves than that in submerged leaves indicated that the acclimation of aerial and submerged photosynthesis depended on changes in the photosynthetic pigments. Based on the stable carbon isotope ratio, key enzyme activities of the C4 pathway indicated that submerged leaves might have the ability to perform C4 metabolism while floating leaves only performed C3 metabolism. In summary, O. ovalifolia acclimates to submerged and aerial environments through changes in morphology, physiology, and biochemistry during different growth stages.

Inorganic carbon utilization: A target of silver nanoparticle toxicity on a submerged macrophyte

Submerged macrophytes play an important role in the global carbon cycle through diversified pathways of inorganic carbon (Ci) utilization distinct from terrestrial plants. However, the effects of silver nanoparticles (AgNPs), an emerging contaminant, were unknown on the Ci utilization of submerged macrophytes. In Ottelia alismoides, the only known submerged macrophyte with three pathways of Ci utilization, before absorption, AgNPs inhibited the external carbonic anhydrase activity thus reducing the capacity of the plant to use HCO₃^-. After entering the plant, AgNPs mainly aggregated at the cell wall and in the chloroplast. The internalized AgNPs inhibited ribulose 1,5-bisphosphate carboxylase-oxygenase (Rubisco) activity blocking CO₂ fixation and disturbed C4 and crassulacean acid metabolism (CAM) by inhibiting phosphoenolpyruvate carboxylase (PEPC), pyruvate phosphate dikinase (PPDK), and NAD-dependent malic enzyme (NAD-ME) activities to alter intracellular malate biosynthesis and decarboxylation. Overall, our findings indicate that the Ci utilization of the submerged macrophyte is a target of AgNPs toxicity that might affect the carbon cycle in aquatic systems.

Turnover of dissolved organic carbon fuels nocturnal CO2 emissions from a headwater catchment reservoir, Southeastern China: Effects of ecosystem metabolism on source partitioning of CO2 emissions

Dam reservoirs in headwater catchments, as critical zones for their proximity to terrestrial sources, play important roles in dissolved organic carbon (DOC) cycling. However, the effects of ecosystem metabolism (EM) on DOC cycling are not well known. Here, in-situ diurnal and monthly observations were conducted to measure EM (including gross primary production (GPP), ecosystem respiration (ER) and heterotrophic respiration (HR)), DOC turnover and CO₂ emissions in a headwater catchment reservoir in Southeastern China in 2020. Our study showed the nocturnal CO₂ emission rate was about twice as high as in daytime, and was strongly driven by EM. The values for DOC turnover velocity ranged from 0.10 to 1.59 m/day, and the average DOC turnover rate was 0.13 day^-1, with the average removal efficiency of 12%. The contribution of respired DOC to daily CO₂ emissions ranged from 17% to 61%. The accumulated efficiencies were estimated to be 13% for the selected 15 reservoirs throughout the Changjiang River network, corresponding to about 0.34 Tg C/year of the respired DOC. The modified CO₂ flux was 0.75 Tg C/year, and respired DOC accounted for about 45% of total emitted CO₂ from the 15 larger reservoirs. Our research emphasizes the necessity of incorporating the effects of EM into studies of reservoir DOC removal and CO₂ emissions.

Carbon and nitrogen metabolic regulation in freshwater plant Ottelia alismoides in response to carbon limitation: A metabolite perspective

Carbon and nitrogen metabolism are basic, but pivotal metabolic pathways in plants and are tightly coupled. Maintaining the balance of carbon and nitrogen metabolism is critical for plant survival. Comprehensively revealing the metabolic balance of carbon-nitrogen interactions is important and helpful for understanding the adaptation of freshwater plants to CO₂ limited aqueous environment. A comprehensive metabolomics analysis combined with physiological measurement was performed in the freshwater plant Ottelia alismoides acclimated to high and low CO₂, respectively, for a better understanding of how the carbon and nitrogen metabolic adjustment in freshwater plants respond to carbon limitation. The present results showed that low CO₂ acclimated O. alismoides exhibited significant diurnal titratable acidity and malate fluctuations, as well as an opposite diel pattern of starch change and high enzymatic activities required for crassulacean acid metabolism (CAM) photosynthesis, which indicates that CAM was induced under low CO₂. Moreover, the metabolomic analysis showed that most intermediates of glycolysis, pentose phosphate pathway (PPP) and tricarboxylic acid (TCA) cycle, were increased under low CO₂, indicative of active respiration in low-CO₂-treated O. alismoides. Meanwhile, the majority of amino acids involved in pathways of glutamate and arginine metabolism, aspartate metabolism, and the branched-chain amino acids (BCAAs) metabolism were significantly increased under low CO₂. Notably, γ-aminobutyric acid (GABA) level was significantly higher in low CO₂ conditions, indicating a typical response with GABA shunt compensated for energy deprivation at low CO₂. Taken together, we conclude that in low-CO₂-stressed O. alismoides, CAM photosynthesis was induced, leading to higher carbon and nitrogen as well as energy requirements. Correspondingly, the respiration was greatly fueled via numerous starch degradation to ensure CO₂ fixation in dark, while accompanied by linked promoted N metabolism, presumably to produce energy and alternative carbon sources and nitrogenous substances for supporting the operation of CAM and enhancing tolerance for carbon limitation. This study not only helps to elucidate the regulating interaction between C and N metabolism to adapt to different CO₂ but also provides novel insights into the effects of CO₂ variation on the metabolic profiling of O. alismoides.

Environmental ranges discriminating between macrophytes groups in European rivers

Riverine macrophytes form distinct species groups. Their occurrence is determined by environmental gradients, e.g. in terms of physico-chemistry and hydromorphology. However, the ranges of environmental variables discriminating between species groups (“discriminatory ranges”) have rarely been quantified and mainly been based on expert judgement, thus limiting options for predicting and assessing ecosystem characteristics. We used a pan-European dataset of riverine macrophyte surveys obtained from 22 countries including data on total phosphorus, nitrate, alkalinity, flow velocity, depth, width and substrate type. Four macrophyte species groups were identified by cluster analysis based on species’ co-occurrences. These comprised Group 1) mosses, such as Amblystegium fluviatile and Fontinalis antipyretica, Group 2) shorter and pioneer species such as Callitriche spp., Group 3) emergent and floating species such as Sagittaria sagittifolia and Lemna spp., and Group 4) eutraphent species such as Myriophyllum spicatum and Stuckenia pectinata. With Random Forest models, the ranges of environmental variables discriminating between these groups were estimated as follows: 100–150 μg L-1 total phosphorus, 0.5–20 mg L-1 nitrate, 1–2 meq L-1 alkalinity, 0.05–0.70 m s-1 flow velocity, 0.3–1.0 m depth and 20–80 m width. Mosses were strongly related to coarse substrate, while vascular plants were related to finer sediment. The four macrophyte groups and the discriminatory ranges of environmental variables fit well with those described in literature, but have now for the first time been quantitatively approximated with a large dataset, suggesting generalizable patterns applicable at regional and local scales.

Mathematical Modeling to Estimate Photosynthesis: A State of the Art

Photosynthesis is a process that indicates the productivity of crops. The estimation of this variable can be achieved through methods based on mathematical models. Mathematical models are usually classified as empirical, mechanistic, and hybrid. To mathematically model photosynthesis, it is essential to know: the input/output variables and their units; the modeling to be used based on its classification (empirical, mechanistic, or hybrid); existing measurement methods and their invasiveness; the validation shapes and the plant species required for experimentation. Until now, a collection of such information in a single reference has not been found in the literature, so the objective of this manuscript is to analyze the most relevant mathematical models for the photosynthesis estimation and discuss their formulation, complexity, validation, number of samples, units of the input/output variables, and invasiveness in the estimation method. According to the state of the art reviewed here, 67% of the photosynthesis measurement models are mechanistic, 13% are empirical and 20% hybrid. These models estimate gross photosynthesis, net photosynthesis, photosynthesis rate, biomass, or carbon assimilation. Therefore, this review provides an update on the state of research and mathematical modeling of photosynthesis.

Role of carbon and nutrient exports from different land uses in the aquatic carbon sequestration and eutrophication process

The hydrochemical features affected by differing land uses play a key role in regulating both the primary production of aquatic photosynthetic organisms and the formation of autochthonous organic carbon (AOC); this impacts eutrophication and the global carbon cycle. In shallow water environments where phytoplankton and submerged plants coexist, the C-N-P limitations on the primary production of these aquatic organisms, and the mechanisms by which they promote the formation of AOC are poorly understood. In this study, over the hydrological year September 2018 to August 2019, a large-scale field simulation experiment at the Shawan Karst Test Site (SW China) with various types of land use was systematically conducted to investigate the C-N-P limitations on the primary production of phytoplankton and submerged plants. The results indicate that (1) phytoplankton are co-limited by nitrogen (N) and phosphorus (P) but with the N more important, while submerged plants are limited by carbon (C); (2) Chlorophyta and Bacillariophyta display a stronger competitive advantage than Cyanophyta in aqueous environments with high C but low N-P; (3) there is a seasonal difference in the contribution of phytoplankton and submerged plants to the formation of AOC, however, throughout the year, the contributions of phytoplankton (27%) and submerged plants biomass (28%) to AOC concentrations in the water were similar, combinedly accounting for approximately 17% of the formed AOC. It is concluded that natural restoration of vegetation, or injecting CO₂ into water, which results in higher C but lower N-P loadings, may simultaneously help to mitigate eutrophication (with changes in biological structure and species) and increase C sequestration in surface waters.

Functional macrophyte trait variation as a response to the source of inorganic carbon acquisition

BACKGROUND

This study aims to compare variation in a range of aquatic macrophyte species leaf traits into three carbon acquisition groups: HCO3 -, free CO2 and atmospheric CO2.

METHODS

The leaf functional traits were measured for 30 species from 30 softwater lakes. Macrophyte species were classified into (1) free CO2, (2) atmospheric CO2 and (3) bicarbonate HCO3 - groups. In each lake we collected water samples and measured eight environmental variables: depth, Secchi depth, photosynthetically active radiation (PAR), pH of water, conductivity, calcium concentration, total nitrogen and total phosphorus. In this study we applied the RLQ analysis to investigate the relationships between species functional traits (Q) and their relationship with environmental variables (R) constrained by species abundance (L).

RESULTS

The results showed that: (1) Aquatic macrophytes exhibited high leaf trait variations as a response to different inorganic carbon acquisition; (2) Traits of leaves refer to the acquisition of carbon for photosynthesis and serve to maximise this process; (3) In the wide softwater habitat, macrophyte species exhibited an extreme range of leaf economic spectrum (leaf area, leaf dry weight and specific leaf area) and wide range of shape trait expressed as circularity; (4) Macrophyte leaf traits are the result of adaptation to carbon acquisition in ambient environment.

Rarity in freshwater vascular plants across Europe and North America: Patterns, mechanisms and future scenarios

Patterns of species rarity have long fascinated ecologists, yet most of what we know about the natural world stems from studies of common species. A large proportion of freshwater plant species has small range sizes and are therefore considered rare. However, little is known about the mechanisms and geographical distribution of rarity in the aquatic realm and to what extent diversity of rare species in freshwater plants follows their terrestrial counterparts. Here, we present the first in-depth analysis of geographical patterns, potential deterministic ecogeographical factors and projected scenarios of freshwater vascular plant rarity using 50 × 50 km grid cells across Europe (41°N-71°N) and North America (25°N-78°N). Our results suggest that diversity of rare species shows different patterns in relation to latitude on the two continents, and that hotspots of rarity concentrate in a relatively small proportion of the European and North American land surface, especially in mountainous as well as in climatically rare and stable areas. Interestingly, we found no differences among alternative rarity definitions and measures when delineating areas with notably high diversity of rare species. Our findings also indicate that few variables, namely a combination of current climate, Late Quaternary climate-change velocity and human footprint, are able to accurately predict the location of continental centers of rare species diversity. However, these relationships are not geographically homogeneous, and the underlying factors likely act synergistically. Perhaps more importantly, we provide empirical evidence that current centers of rare species diversity are characterized by higher anthropogenic impacts and might shrink disproportionately within this century as the climate changes. Our reported distributional patterns of species rarity align with the known trends in species richness of other freshwater organisms and may help conservation planners make informed decisions mitigating the effects of climate change and other anthropogenic impacts on biodiversity.

The interplay of nutrients, dissolved inorganic carbon and algae in determining macrophyte occurrences in rivers

Nitrogen and phosphorous concentrations are widely considered to drive macrophyte assemblages in rivers. However, Dissolved Inorganic Carbon (DIC) - available for plants as CO₂ and HCO₃^- - is also of major relevance. Based on literature, we present a conceptual model on the interaction between algae, macrophytes, DIC, pH, light, N, P and the surface water and sedimental compartment. Analysing two separate datasets (i) on river physico-chemistry and chlorophyll-a, and (ii) on river physico-chemistry and macrophytes we quantify three connections within this concept: (1) the correlation of chlorophyll-a versus pH, (2) the correlation of TP versus chlorophyll-a and (3) the occurrence of HCO₃-users and CO₂-only-users among macrophytes along the DIC gradient. Chlorophyll-a correlated positively with pH (R-squared = 77%, p < .001) due to increased carbon dioxide uptake of phytoplankton. Surface water TP did not linearly correlate with chlorophyll-a concentrations. Obligate and optionally submerged macrophyte species that utilise HCO₃^- were separated from CO₂-only-users by HCO₃^- concentrations, with an area under the curve (AUC) of 68% and 70% (both p < .001) between groups. Obligate and optionally submerged macrophyte assemblages only composed of HCO₃-users and those exclusively composed of CO₂-only-users showed an even stronger separation based on the HCO₃^- concentration, with both an AUC of 82% and 78% (both p < .001). Our results underline that DIC can greatly affect riverine macrophytes. However, absolute concentrations of HCO₃^- are less relevant, while the connection to pH is more important, reflecting CO₂ concentrations. River monitoring and management should consider the interaction between nutrients DIC, surface water and sedimental compartment as important factors affecting macrophyte occurrence, rather than solely focussing on surface water nutrients.

Simultaneous inversion of concentrations of POC and its endmembers in lakes: A novel remote sensing strategy

Data on the concentration of particulate organic carbon (POC) and its endmembers provide a basis for the characterisation of lake biogeochemical cycles. Here, a novel remote sensing strategy (the SC_POC algorithm) was developed to determine total POC concentrations, as well as terrestrial and endogenous POC concentrations in lakes. This strategy provides a successful example for the combination of isotope tracer and remote sensing technology. First, we obtained the terrestrial and endogenous POC concentration at the sampling point based on isotope tracing technology. Afterwards, we established a relationship between the phytoplankton absorption coefficient and the endogenous POC concentration (C_end), and applied a semi-analytical algorithm to invert the C_end value. Finally, the POC source ratio model and C_end value were combined to obtain the POC concentration (C_POC) and terrestrial POC (C_ter). The results of synchronisation verification based on ocean and land colour instrument (OLCI) images show that the SC_POC algorithm has high C_end, C_ter, and C_POC inversion accuracy, with MAPE values of 26.07%, 30.43%, and 42.28%, respectively. In fact, the SC_POC algorithm not only improved the accuracy of lake POC mapping, but also fills the gap of optical retrieval of POC endmember concentrations. Additionally, data from the OLCI images indicated that the studied lakes were dominated by external POC. However, because of the greater contribution of algal blooms to POC, this dominant advantage weakens in summer, although the terrestrial organic carbon carried by rainfall runoff also affects lake POC composition. Different POC sources have different ecological roles in lakes, and the superior POC end-element estimation capability of the SC_POC algorithm can not only be used as a supplement to traditional tracing methods, but also provides accurate spatial data for lake management.

Large pools and fluxes of carbon, calcium and phosphorus in dense charophyte stands in ponds

Bicarbonate and calcium set bounds on photosynthesis and degradation processes in calcareous freshwaters. Charophytic algae use bicarbonate in photosynthesis, and direct variable proportions to assimilate organic carbon and to precipitate calcium carbonate on their surfaces. To evaluate pools of organic carbon (C_org), carbonate carbon (C_carbonate), and phosphorus (P) in dense charophyte vegetation, we studied apical and basal tissue and carbonate surface precipitates, as well as underlying sediments in ten calcareous ponds. We also quantified the release of calcium, bicarbonate and phosphate from charophyte shoots in dark experiments. We found that the C_org:C_carbonate quotient in charophyte stands averaged 1.19 during spring and summer. The C_org:C_carbonate quotient in the sediments formed by dead charophytes averaged 0.97 in accordance with some respiratory CO₂ release without carbonate dissolution to bicarbonate. The molar quotient of carbon to calcium was close to 2.0 in sediment and pond water. In dark incubations, shoots subjected to calcium carbonate dissolution released bicarbonate and calcium with a molar quotient of 2:1; lowered pH (7.0-8.0) increased the release. Thus, the carbonate surface crust on living charophytes was not inert, as hitherto anticipated. Phosphate dark release occurred from basal shoots only, was unrelated to pH, and may have derived from organic decomposition, rather than from carbonate dissolution. Extensive phosphorus pools were associated with the charophyte stands (200-600 mg m^-2) and had about 2/3 incorporated in alga tissue and 1/3 in carbonate crust. Overall, the biogeochemistry of carbon, calcium and phosphorus are closely linked in calcareous charophyte ponds. Carbonate dissolution from charophyte crusts at night and continuously from sediment might balance extensive carbonate precipitation during daytime photosynthesis. The substantial P-pool in charophyte stands may not derive from P-deprived water, but from P-rich sediment. Charophyte photosynthesis may still contribute to nutrient-poor conditions by forming carbonate-rich sediment of high P-binding capacity.

Lakes in the era of global change: moving beyond single-lake thinking in maintaining biodiversity and ecosystem services

The Anthropocene presents formidable threats to freshwater ecosystems. Lakes are especially vulnerable and important at the same time. They cover only a small area worldwide but harbour high levels of biodiversity and contribute disproportionately to ecosystem services. Lakes differ with respect to their general type (e.g. land-locked, drainage, floodplain and large lakes) and position in the landscape (e.g. highland versus lowland lakes), which contribute to the dynamics of these systems. Lakes should be generally viewed as 'meta-systems', whereby biodiversity is strongly affected by species dispersal, and ecosystem dynamics are contributed by the flow of matter and substances among locations in a broader waterscape context. Lake connectivity in the waterscape and position in the landscape determine the degree to which a lake is prone to invasion by non-native species and accumulation of harmful substances. Highly connected lakes low in the landscape accumulate nutrients and pollutants originating from ecosystems higher in the landscape. The monitoring and restoration of lake biodiversity and ecosystem services should consider the fact that a high degree of dynamism is present at local, regional and global scales. However, local and regional monitoring may be plagued by the unpredictability of ecological phenomena, hindering adaptive management of lakes. Although monitoring data are increasingly becoming available to study responses of lakes to global change, we still lack suitable integration of models for entire waterscapes. Research across disciplinary boundaries is needed to address the challenges that lakes face in the Anthropocene because they may play an increasingly important role in harbouring unique aquatic biota as well as providing ecosystem goods and services in the future.

Integrating carbon emission, accumulation and transport in inland waters to understand their role in the global carbon cycle

Inland waters receive a significant quantity of carbon (C) from land. The fate of this C during transit, whether it is emitted to the atmosphere, accumulated in sediments or transported to the ocean, can considerably reshape the landscape C balance. However, these different fates of terrestrial C are not independent but are instead linked via several catchment and aquatic processes. Thus, according to mass conservation, any environmental change inducing a shift in a particular C fate should come at the expense of at least one other fate. Nonetheless, studies that have investigated C emission, accumulation and transport concertedly are scarce, resulting in fragmented knowledge of the role of inland waters in the global C cycle. Here, we propose a framework to understand how different C fates in aquatic systems are interlinked and covary under environmental changes. First, to explore how C fates are currently distributed in streams, rivers, reservoirs and lakes, we compiled data from the literature and show that 'C fate allocation' varies widely both within and among inland water systems types. Secondly, we developed a framework that integrates C fates in any inland water system by identifying the key processes underlying their linkages. Our framework places the partitioning between the different C forms, and how this is controlled by export from land, internal transformations and hydrology, as central to understanding C fate allocation. We argue that, by focusing on a single fate, studies could risk drawing misleading conclusions regarding how environmental changes will alter the role of inland waters in the global C cycle. Our framework thus allows us to holistically assess the consequences of such changes on coupled C fluxes, setting a foundation for understanding the contemporary and future fate of land-derived C in inland water systems.

External α-carbonic anhydrase and solute carrier 4 are required for bicarbonate uptake in a freshwater angiosperm

The freshwater monocot Ottelia alismoides is the only known species to operate three CO2-concentrating mechanisms (CCMs): constitutive bicarbonate (HCO3-) use, C4 photosynthesis, and facultative Crassulacean acid metabolism, but the mechanism of HCO3- use is unknown. We found that the inhibitor of an anion exchange protein, 4,4'-diisothio-cyanatostilbene-2,2'-disulfonate (DIDS), prevented HCO3- use but also had a small effect on CO2 uptake. An inhibitor of external carbonic anhydrase (CA), acetazolamide (AZ), reduced the affinity for CO2 uptake but also prevented HCO3- use via an effect on the anion exchange protein. Analysis of mRNA transcripts identified a homologue of solute carrier 4 (SLC4) responsible for HCO3- transport, likely to be the target of DIDS, and a periplasmic α-carbonic anhydrase 1 (α-CA1). A model to quantify the contribution of the three different pathways involved in inorganic carbon uptake showed that passive CO2 diffusion dominates inorganic carbon uptake at high CO2 concentrations. However, as CO2 concentrations fall, two other pathways become predominant: conversion of HCO3- to CO2 at the plasmalemma by α-CA1 and transport of HCO3- across the plasmalemma by SLC4. These mechanisms allow access to a much larger proportion of the inorganic carbon pool and continued photosynthesis during periods of strong carbon depletion in productive ecosystems.

Responses of CO2-concentrating mechanisms and photosynthetic characteristics in aquatic plant Ottelia alismoides following cadmium stress under low CO2

The effects of cadmium (Cd) have been investigated in an aquatic plant Ottelia alismoides grown under low CO₂. Under low CO₂, no Cd treated O. alismoides operated three carbon dioxide-concentrating mechanisms (CCMs) efficiently, including HCO₃^- acquisition, C4 and CAM photosynthesis. After 4 days of treatment with 200 μM and 2000 μM Cd, O. alismoides exhibited an elevated Cd accumulation along with the increasing Cd concentration. Both Cd treatments induced appreciable phytotoxicities in O. alismoides. The leaves showed chlorosis symptoms and the anatomy as well as chloroplast ultrastructure were obviously damaged. Significant decreases in the content of pigments, chlorophyll fluorescence (Fv/Fm and Yield of PS II) and carbon isotope ratio (δ¹³C) were measured in leaf extracts of O. alismoides grown with both concentrations of Cd. In addition, the pH-drift technique showed that both Cd-treated O. alismoides plants could not uptake HCO₃^-. The maximum and minimum acidity in Cd-exposed O. alismoides were greatly decreased and the diurnal change of acidity was absent in both Cd treated plants. Furthermore, significant decreases in ribulose-1,5-bisphosphate carboxylase/oxygenase (Rubisco), pyruvate phosphate dikinase (PPDK) and phosphoenolpyruvate carboxylase (PEPC) activities were also found at Cd treated O. alismoides plants, indicating the disturbance within C4 cycle. The alterations in the functionality of CCMs in O. alismoides induced by Cd might be related with the inhibition of the enzymes such as carbonic anhydrase (CA) and PEPC involved in inorganic carbon fixation, and the destruction of chloroplasts, as well as the re-allocation of energy and nutrients involved in CCMs and Cd detoxification.

Net landscape carbon balance of a tropical savanna: Relative importance of fire and aquatic export in offsetting terrestrial production

The magnitude of the terrestrial carbon (C) sink may be overestimated globally due to the difficulty of accounting for all C losses across heterogeneous landscapes. More complete assessments of net landscape C balances (NLCB) are needed that integrate both emissions by fire and transfer to aquatic systems, two key loss pathways of terrestrial C. These pathways can be particularly significant in the wet-dry tropics, where fire plays a fundamental part in ecosystems and where intense rainfall and seasonal flooding can result in considerable aquatic C export (ΣF_aq ). Here, we determined the NLCB of a lowland catchment (~140 km² ) in tropical Australia over 2 years by evaluating net terrestrial productivity (NEP), fire-related C emissions and ΣF_aq (comprising both downstream transport and gaseous evasion) for the two main landscape components, that is, savanna woodland and seasonal wetlands. We found that the catchment was a large C sink (NLCB 334 Mg C km^-2  year^-1 ), and that savanna and wetland areas contributed 84% and 16% to this sink, respectively. Annually, fire emissions (-56 Mg C km^-2  year^-1 ) and ΣF_aq (-28 Mg C km^-2  year^-1 ) reduced NEP by 13% and 7%, respectively. Savanna burning shifted the catchment to a net C source for several months during the dry season, while ΣF_aq significantly offset NEP during the wet season, with a disproportionate contribution by single major monsoonal events-up to 39% of annual ΣF_aq was exported in one event. We hypothesize that wetter and hotter conditions in the wet-dry tropics in the future will increase ΣF_aq and fire emissions, potentially further reducing the current C sink in the region. More long-term studies are needed to upscale this first NLCB estimate to less productive, yet hydrologically dynamic regions of the wet-dry tropics where our result indicating a significant C sink may not hold.

Comparison of markers for the monitoring of freshwater benthic biodiversity through DNA metabarcoding

Metabarcoding of bulk or environmental DNA has great potential for biomonitoring of freshwater environments. However, successful application of metabarcoding to biodiversity monitoring requires universal primers with high taxonomic coverage that amplify highly variable, short metabarcodes with high taxonomic resolution. Moreover, reliable and extensive reference databases are essential to match the outcome of metabarcoding analyses with available taxonomy and biomonitoring indices. Benthic invertebrates, particularly insects, are key taxa for freshwater bioassessment. Nevertheless, few studies have so far assessed markers for metabarcoding of freshwater macrobenthos. Here we combined in silico and laboratory analyses to test the performance of different markers amplifying regions in the 18S rDNA (Euka02), 16S rDNA (Inse01) and COI (BF1_BR2-COI) genes, and developed an extensive database of benthic macroinvertebrates of France and Europe, with a particular focus on key insect orders (Ephemeroptera, Plecoptera and Trichoptera). Analyses on 1,514 individuals representing different taxa of benthic macroinvertebrates showed very different amplification success across primer combinations. The Euka02 marker showed the highest universality, while the Inse01 marker showed excellent performance for the amplification of insects. BF1_BR2-COI showed the highest resolution, while the resolution of Euka02 was often limited. By combining our data with GenBank information, we developed a curated database including sequences representing 822 genera. The heterogeneous performance of the different primers highlights the complexity in identifying the best markers, and advocates for the integration of multiple metabarcodes for a more comprehensive and accurate understanding of ecological impacts on freshwater biodiversity.

Responses of lake macrophyte species and functional traits to climate and land use changes

Aquatic plants are essential components in the regulation of microhabitat complexity and physico-chemical parameters in lake ecosystems. Increased eutrophication, land use change, modification of hydrological regimes, and expansion of invasive species are expected to impact aquatic plant community composition; however, historical pathways and response patterns are not well understood at the national scale. We analyzed temporal changes in aquatic plant communities in Japan from the early 1900s to the 2000s using field survey records from 248 lakes. Relationships of species associations with climate, land use, and lake characteristics were described using a joint species distribution model. The mean variation attributable to lake characteristics was 25.4%, followed by climate (14.0%), and land use (10.5%). Among the 13 functional traits used in our analysis, sexual and pollination traits showed marked responses to precipitation and land use. Hypohydrophily increased with precipitation, whereas monoecious aquatic plants increased in lakes surrounded by urbanized area. The relative ratio of floating to submerged plants has increased over time. Our results provide insight into long-term changes in aquatic plant communities and identify functional traits sensitive to environmental change.

Responses of Leaf Anatomy and CO2 Concentrating Mechanisms of the Aquatic Plant Ottelia cordata to Variable CO2

Acclimation to variable CO₂ was studied in floating leaves of the freshwater monocot Ottelia cordata grown in either low or high CO₂. The most striking anatomical variations responding to high CO₂ included the enlarged upper epidermal cells and the decreased area of epidermal chloroplasts. Stomata that distributed on the upper surface, and the stomatic chamber area, showed no significant response to high CO₂. pH-drift experiments indicated that floating leaves of O. cordata were able to use bicarbonate regardless of CO₂ concentrations. Photosynthetic enzyme activities and patterns of organic acids fluctuation confirmed that floating leaves of O. cordata can operate CAM only at low CO₂, and perform C₄-like metabolism at both high and low CO₂. Overall, the present results imply that the floating leaves of O. cordata does not just rely on the atmospheric CO₂ for its inorganic carbon, but is also dependent on CO₂ and bicarbonate in the water. By showing these effects of CO₂ variation, we highlight the need for further experimental studies on the regulatory mechanisms in O. cordata floating leaves, that prevent futile cycling among the three CO₂ concentrating mechanisms (bicarbonate use, C₄, and CAM metabolism) and the strategy for exploiting atmospheric CO₂, as well as studies on the detailed biochemical pathway for C₄ and CAM metabolism in this species.

Structural basis for C4 photosynthesis without Kranz anatomy in leaves of the submerged freshwater plant Ottelia alismoides

BACKGROUND AND AIMS

Ottelia alismoides (Hydrocharitaceae) is a freshwater macrophyte that, unusually, possesses three different CO2-concentrating mechanisms. Here we describe its leaf anatomy and chloroplast ultrastructure, how these are altered by CO2 concentration and how they may underlie C4 photosynthesis.

METHODS

Light and transmission electron microscopy were used to study the anatomy of mature leaves of O. alismoides grown at high and low CO2 concentrations. Diel acid change and the activity of phosphoenolpyruvate carboxylase were measured to confirm that CAM activity and C4 photosynthesis were present.

KEY RESULTS

When O. alismoides was grown at low CO2, the leaves performed both C4 and CAM photosynthesis whereas at high CO2 leaves used C4 photosynthesis. The leaf comprised an upper and lower layer of epidermal cells separated by a large air space occupying about 22 % of the leaf transverse-section area, and by mesophyll cells connecting the two epidermal layers. Kranz anatomy was absent. At low CO2, chloroplasts in the mesophyll cells were filled with starch even at the start of the photoperiod, while epidermal chloroplasts contained small starch grains. The number of chloroplasts in the epidermis was greater than in the mesophyll cells. At high CO2, the structure was unchanged but the thicknesses of the two epidermal layers, the air space, mesophyll and the transverse-section area of cells and air space were greater.

CONCLUSIONS

Leaves of O. alismoides have epidermal and mesophyll cells that contain chloroplasts and large air spaces but lack Kranz anatomy. The high starch content of mesophyll cells suggests they may benefit from an internal source of CO2, for example via C4 metabolism, and are also sites of starch storage. The air spaces may help in the recycling of decarboxylated or respired CO2. The structural similarity of leaves at low and high CO2 is consistent with the constitutive nature of bicarbonate and C4 photosynthesis. There is sufficient structural diversity within the leaf of O. alismoides to support dual-cell C4 photosynthesis even though Kranz anatomy is absent.

Interactive Effects of Rising Temperature and Nutrient Enrichment on Aquatic Plant Growth, Stoichiometry, and Palatability

The abundance and stoichiometry of aquatic plants are crucial for nutrient cycling and energy transfer in aquatic ecosystems. However, the interactive effects of multiple global environmental changes, including temperature rise and eutrophication, on aquatic plant stoichiometry and palatability remain largely unknown. Here, we hypothesized that (1) plant growth rates increase faster with rising temperature in nutrient-rich than nutrient-poor sediments; (2) plant carbon (C): nutrient ratios [nitrogen (N) and phosphorus (P)] respond differently to rising temperatures at contrasting nutrient conditions of the sediment; (3) external nutrient loading to the water column limits the growth of plants and decreases plant C:nutrient ratios; and that (4) changes in plant stoichiometry affect plant palatability. We used the common rooted submerged plant Vallisneria spiralis as a model species to test the effects of temperature and nutrient availability in both the sediment and the water column on plant growth and stoichiometry in a full-factorial experiment. The results confirmed that plants grew faster in nutrient-rich than nutrient-poor sediments with rising temperature, whereas external nutrient loading decreased the growth of plants due to competition by algae. The plant C: N and C: P ratios responded differently at different nutrient conditions to rising temperature. Rising temperature increased the metabolic rates of organisms, increased the nutrient availability in the sediment and enhanced plant growth. Plant growth was limited by a shortage of N in the nutrient-poor sediment and in the treatment with external nutrient loading to the water column, as a consequence, the limited plant growth caused an accumulation of P in the plants. Therefore, the effects of temperature on aquatic plant C:nutrient ratios did not only depend on the availability of the specific nutrients in the environment, but also on plant growth, which could result in either increased, unaltered or decreased plant C:nutrient ratios in response to temperature rise. Plant feeding trial assays with the generalist consumer Lymnaea stagnalis (Gastropoda) did not show effects of temperature or nutrient treatments on plant consumption rates. Overall, our results implicate that warming and eutrophication might interactively affect plant abundance and plant stoichiometry, and therefore influence nutrient cycling in aquatic ecosystems.