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For: Ishii S, Ashida N, Otsuka S, Senoo K. Isolation of oligotrophic denitrifiers carrying previously uncharacterized functional gene sequences. Appl Environ Microbiol 2011;77:338-42. [PMID: 21075882 DOI: 10.1128/AEM.02189-10] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
He T, Lin W, Yang S, Du J, Giri B, Feng C, Gilliam FS, Zhang F, Zhang X, Zhang X. Arbuscular mycorrhizal fungi reduce soil N2O emissions by altering root traits and soil denitrifier community composition. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;933:173065. [PMID: 38723969 DOI: 10.1016/j.scitotenv.2024.173065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 04/23/2024] [Accepted: 05/06/2024] [Indexed: 05/20/2024]
2
Park SY, Zhang Y, Kwon JS, Kwon MJ. Multi-approach assessment of groundwater biogeochemistry: Implications for the site characterization of prospective spent nuclear fuel repository sites. THE SCIENCE OF THE TOTAL ENVIRONMENT 2024;926:171918. [PMID: 38522553 DOI: 10.1016/j.scitotenv.2024.171918] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2024] [Revised: 03/10/2024] [Accepted: 03/21/2024] [Indexed: 03/26/2024]
3
Sui P, Tian P, Wang Z, Lian H, Yang Y, Ma Z, Jiang Y, Zheng J, Qi H. Soil properties and microbial communities of spring maize filed in response to tillage with straw incorporation and nitrogen fertilization in northeast China. PeerJ 2022;10:e13462. [PMID: 35586128 PMCID: PMC9109688 DOI: 10.7717/peerj.13462] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/09/2021] [Accepted: 04/28/2022] [Indexed: 01/14/2023]  Open
4
Cai C, Ni G, Xia J, Zhang X, Zheng Y, He B, Marcellin E, Li W, Pu J, Yuan Z, Hu S. Response of the Anaerobic Methanotrophic Archaeon Candidatus "Methanoperedens nitroreducens" to the Long-Term Ferrihydrite Amendment. Front Microbiol 2022;13:799859. [PMID: 35509320 PMCID: PMC9058156 DOI: 10.3389/fmicb.2022.799859] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2021] [Accepted: 03/10/2022] [Indexed: 11/30/2022]  Open
5
Okamoto T, Shinjo R, Nishihara A, Uesaka K, Tanaka A, Sugiura D, Kondo M. Genotypic Variation of Endophytic Nitrogen-Fixing Activity and Bacterial Flora in Rice Stem Based on Sugar Content. FRONTIERS IN PLANT SCIENCE 2021;12:719259. [PMID: 34447404 PMCID: PMC8383490 DOI: 10.3389/fpls.2021.719259] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2021] [Accepted: 07/09/2021] [Indexed: 05/14/2023]
6
Anderson E, Jang J, Venterea R, Feyereisen G, Ishii S. Isolation and characterization of denitrifiers from woodchip bioreactors for bioaugmentation application. J Appl Microbiol 2020;129:590-600. [DOI: 10.1111/jam.14655] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2019] [Revised: 02/28/2020] [Accepted: 03/27/2020] [Indexed: 12/13/2022]
7
Wang T, Wu T, Wang H, Dong W, Zhao Y, Chu Z, Yan G, Chang Y. Comparative Study of Denitrifying-MBBRs with Different Polyethylene Carriers for Advanced Nitrogen Removal of Real Reverse Osmosis Concentrate. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020;17:ijerph17082667. [PMID: 32295014 PMCID: PMC7215845 DOI: 10.3390/ijerph17082667] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/03/2020] [Revised: 04/10/2020] [Accepted: 04/11/2020] [Indexed: 11/16/2022]
8
Avşar C, Aras ES. Quantification of denitrifier genes population size and its relationship with environmental factors. Arch Microbiol 2020;202:1181-1192. [PMID: 32076734 DOI: 10.1007/s00203-020-01826-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2019] [Revised: 01/28/2020] [Accepted: 01/30/2020] [Indexed: 10/25/2022]
9
Fujimura R, Azegami Y, Wei W, Kakuta H, Shiratori Y, Ohte N, Senoo K, Otsuka S, Isobe K. Distinct Community Composition of Previously Uncharacterized Denitrifying Bacteria and Fungi across Different Land-Use Types. Microbes Environ 2020;35:ME19064. [PMID: 31996500 PMCID: PMC7104279 DOI: 10.1264/jsme2.me19064] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2019] [Accepted: 12/04/2019] [Indexed: 11/30/2022]  Open
10
Community structures and comparison of nosZ and 16S rRNA genes from culturable denitrifying bacteria. Folia Microbiol (Praha) 2019;65:497-510. [DOI: 10.1007/s12223-019-00754-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2019] [Accepted: 10/14/2019] [Indexed: 10/25/2022]
11
Suenaga T, Hori T, Riya S, Hosomi M, Smets BF, Terada A. Enrichment, Isolation, and Characterization of High-Affinity N2O-Reducing Bacteria in a Gas-Permeable Membrane Reactor. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2019;53:12101-12112. [PMID: 31517481 DOI: 10.1021/acs.est.9b02237] [Citation(s) in RCA: 33] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
12
Li L, Yan G, Wang H, Chu Z, Li Z, Ling Y, Wu T. Denitrification and microbial community in MBBR using A. donax as carbon source and biofilm carriers for reverse osmosis concentrate treatment. J Environ Sci (China) 2019;84:133-143. [PMID: 31284905 DOI: 10.1016/j.jes.2019.04.030] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2019] [Revised: 04/30/2019] [Accepted: 04/30/2019] [Indexed: 06/09/2023]
13
Altshuler I, Ronholm J, Layton A, Onstott TC, W. Greer C, Whyte LG. Denitrifiers, nitrogen-fixing bacteria and N2O soil gas flux in high Arctic ice-wedge polygon cryosols. FEMS Microbiol Ecol 2019;95:5481522. [DOI: 10.1093/femsec/fiz049] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2018] [Accepted: 04/24/2019] [Indexed: 11/13/2022]  Open
14
Jang J, Anderson EL, Venterea RT, Sadowsky MJ, Rosen CJ, Feyereisen GW, Ishii S. Denitrifying Bacteria Active in Woodchip Bioreactors at Low-Temperature Conditions. Front Microbiol 2019;10:635. [PMID: 31001220 PMCID: PMC6454037 DOI: 10.3389/fmicb.2019.00635] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Accepted: 03/13/2019] [Indexed: 11/13/2022]  Open
15
Jang J, Sakai Y, Senoo K, Ishii S. Potentially Mobile Denitrification Genes Identified in Azospirillum sp. Strain TSH58. Appl Environ Microbiol 2019;85:e02474-18. [PMID: 30413471 PMCID: PMC6328785 DOI: 10.1128/aem.02474-18] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2018] [Accepted: 11/05/2018] [Indexed: 11/20/2022]  Open
16
Botchkova EA, Litti YV, Novikov AA, Grouzdev DS, Bochkareva ES, Beskorovayny AV, Kuznetsov BB, Nozhevnikova AN. Description of “Candidatus Jettenia ecosi” sp. nov., a New Species of Anammox Bacteria. Microbiology (Reading) 2018. [DOI: 10.1134/s002626171806005x] [Citation(s) in RCA: 19] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]  Open
17
Jang J, Ashida N, Kai A, Isobe K, Nishizawa T, Otsuka S, Yokota A, Senoo K, Ishii S. Presence of Cu-Type (NirK) and cd1-Type (NirS) Nitrite Reductase Genes in the Denitrifying Bacterium Bradyrhizobium nitroreducens sp. nov. Microbes Environ 2018;33:326-331. [PMID: 30158366 PMCID: PMC6167111 DOI: 10.1264/jsme2.me18039] [Citation(s) in RCA: 27] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
18
Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes. Appl Environ Microbiol 2018. [PMID: 29427421 DOI: 10.1128/aem.02615‐17] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
19
Nitrogen Cycle Evaluation (NiCE) Chip for Simultaneous Analysis of Multiple N Cycle-Associated Genes. Appl Environ Microbiol 2018;84:AEM.02615-17. [PMID: 29427421 DOI: 10.1128/aem.02615-17] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2017] [Accepted: 01/28/2018] [Indexed: 01/20/2023]  Open
20
Sánchez C, Minamisawa K. Redundant roles of Bradyrhizobium oligotrophicum Cu-type (NirK) and cd1-type (NirS) nitrite reductase genes under denitrifying conditions. FEMS Microbiol Lett 2018;365:4817536. [DOI: 10.1093/femsle/fny015] [Citation(s) in RCA: 36] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Accepted: 01/18/2018] [Indexed: 12/22/2022]  Open
21
Black EM, Chimenti MS, Just CL. Effect of freshwater mussels on the vertical distribution of anaerobic ammonia oxidizers and other nitrogen-transforming microorganisms in upper Mississippi river sediment. PeerJ 2017;5:e3536. [PMID: 28717594 PMCID: PMC5510576 DOI: 10.7717/peerj.3536] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2017] [Accepted: 06/13/2017] [Indexed: 01/03/2023]  Open
22
Ishii S, Ashida N, Ohno H, Segawa T, Yabe S, Otsuka S, Yokota A, Senoo K. Noviherbaspirillum denitrificans sp. nov., a denitrifying bacterium isolated from rice paddy soil and Noviherbaspirillum autotrophicum sp. nov., a denitrifying, facultatively autotrophic bacterium isolated from rice paddy soil and proposal to reclassify Herbaspirillum massiliense as Noviherbaspirillum massiliense comb. nov. Int J Syst Evol Microbiol 2017. [DOI: 10.1099/ijsem.0.001875] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
23
Corteselli EM, Aitken MD, Singleton DR. Rugosibacter aromaticivorans gen. nov., sp. nov., a bacterium within the family Rhodocyclaceae, isolated from contaminated soil, capable of degrading aromatic compounds. Int J Syst Evol Microbiol 2017;67:311-318. [PMID: 27902243 DOI: 10.1099/ijsem.0.001622] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Mac Conell EFA, Almeida PGS, Martins KEL, Araújo JC, Chernicharo CAL. Bacterial community involved in the nitrogen cycle in a down-flow sponge-based trickling filter treating UASB effluent. WATER SCIENCE AND TECHNOLOGY : A JOURNAL OF THE INTERNATIONAL ASSOCIATION ON WATER POLLUTION RESEARCH 2015;72:116-122. [PMID: 26114279 DOI: 10.2166/wst.2015.154] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
25
Ishii S, Song Y, Rathnayake L, Tumendelger A, Satoh H, Toyoda S, Yoshida N, Okabe S. Identification of key nitrous oxide production pathways in aerobic partial nitrifying granules. Environ Microbiol 2014;16:3168-80. [PMID: 24650173 DOI: 10.1111/1462-2920.12458] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2013] [Accepted: 03/16/2014] [Indexed: 11/28/2022]
26
Bellini MI, Gutiérrez L, Tarlera S, Scavino AF. Isolation and functional analysis of denitrifiers in an aquifer with high potential for denitrification. Syst Appl Microbiol 2013;36:505-16. [DOI: 10.1016/j.syapm.2013.07.001] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2012] [Revised: 07/04/2013] [Accepted: 07/06/2013] [Indexed: 10/26/2022]
27
Diverse gene cassettes in class 1 integrons of facultative oligotrophic bacteria of River Mahananda,West Bengal, India. PLoS One 2013;8:e71753. [PMID: 23951238 PMCID: PMC3739733 DOI: 10.1371/journal.pone.0071753] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2013] [Accepted: 07/02/2013] [Indexed: 11/19/2022]  Open
28
Denitrifying alphaproteobacteria from the Arabian Sea that express nosZ, the gene encoding nitrous oxide reductase, in oxic and suboxic waters. Appl Environ Microbiol 2013;79:2670-81. [PMID: 23396348 DOI: 10.1128/aem.03705-12] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
29
Yoshida M, Ishii S, Fujii D, Otsuka S, Senoo K. Identification of active denitrifiers in rice paddy soil by DNA- and RNA-based analyses. Microbes Environ 2012;27:456-61. [PMID: 22972387 PMCID: PMC4103554 DOI: 10.1264/jsme2.me12076] [Citation(s) in RCA: 55] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
30
Wang Y, Wan R, Zhang S, Xie S. Anthracene biodegradation under nitrate-reducing condition and associated microbial community changes. BIOTECHNOL BIOPROC E 2012. [DOI: 10.1007/s12257-011-0567-8] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
31
Ishikawa K, Ohmori T, Miyamoto H, Ito T, Kumagai Y, Sonoda M, Matsumoto J, Miyamoto H, Kodama H. Denitrification in soil amended with thermophile-fermented compost suppresses nitrate accumulation in plants. Appl Microbiol Biotechnol 2012;97:1349-59. [DOI: 10.1007/s00253-012-4004-5] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2012] [Revised: 02/28/2012] [Accepted: 02/29/2012] [Indexed: 01/22/2023]
32
Yuan Q, Liu P, Lu Y. Differential responses of nirK- and nirS-carrying bacteria to denitrifying conditions in the anoxic rice field soil. ENVIRONMENTAL MICROBIOLOGY REPORTS 2012;4:113-122. [PMID: 23757237 DOI: 10.1111/j.1758-2229.2011.00311.x] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/02/2023]
33
Maeda K, Hanajima D, Toyoda S, Yoshida N, Morioka R, Osada T. Microbiology of nitrogen cycle in animal manure compost. Microb Biotechnol 2011;4:700-9. [PMID: 21375720 PMCID: PMC3815407 DOI: 10.1111/j.1751-7915.2010.00236.x] [Citation(s) in RCA: 88] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2010] [Accepted: 10/17/2010] [Indexed: 11/29/2022]  Open
34
Ishii S, Ikeda S, Minamisawa K, Senoo K. Nitrogen cycling in rice paddy environments: past achievements and future challenges. Microbes Environ 2011;26:282-92. [PMID: 22008507 DOI: 10.1264/jsme2.me11293] [Citation(s) in RCA: 82] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
35
Ishii S, Ohno H, Tsuboi M, Otsuka S, Senoo K. Identification and isolation of active N2O reducers in rice paddy soil. ISME JOURNAL 2011;5:1936-45. [PMID: 21677691 DOI: 10.1038/ismej.2011.69] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
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