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For: Gloux K, Leclerc M, Iliozer H, L'Haridon R, Manichanh C, Corthier G, Nalin R, Blottière HM, Doré J. Development of high-throughput phenotyping of metagenomic clones from the human gut microbiome for modulation of eukaryotic cell growth. Appl Environ Microbiol 2007;73:3734-7. [PMID: 17400773 PMCID: PMC1932692 DOI: 10.1128/aem.02204-06] [Citation(s) in RCA: 30] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]  Open
Number Cited by Other Article(s)
1
Mathieu E, Léjard V, Ezzine C, Govindin P, Morat A, Giat M, Lapaque N, Doré J, Blottière HM. An Insight into Functional Metagenomics: A High-Throughput Approach to Decipher Food-Microbiota-Host Interactions in the Human Gut. Int J Mol Sci 2023;24:17630. [PMID: 38139456 PMCID: PMC10744307 DOI: 10.3390/ijms242417630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2023] [Revised: 12/08/2023] [Accepted: 12/15/2023] [Indexed: 12/24/2023]  Open
2
Akhtar A, Lata M, Sunsunwal S, Yadav A, Lnu K, Subramanian S, Ramya TNC. New carbohydrate binding domains identified by phage display based functional metagenomic screens of human gut microbiota. Commun Biol 2023;6:371. [PMID: 37019943 PMCID: PMC10076258 DOI: 10.1038/s42003-023-04718-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2022] [Accepted: 03/16/2023] [Indexed: 04/07/2023]  Open
3
Michire A, Anghel R, Draghia PM, Burlacu MG, Georgescu TF, Georgescu DE, Balcangiu-Stroescu AE, Vacaroiu IA, Barbu M, Gaube A. The Microbiota and the Relationship with Colorectal Cancer: Surgical Complications—A Review. GASTROINTESTINAL DISORDERS 2022;4:66-76. [DOI: 10.3390/gidisord4020008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]  Open
4
Britton GJ, Faith JJ. Causative Microbes in Host-Microbiome Interactions. Annu Rev Microbiol 2021;75:223-242. [PMID: 34348027 DOI: 10.1146/annurev-micro-041321-042402] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
5
Vidmar B, Vodovnik M. Microbial Keratinases: Enzymes with Promising Biotechnological Applications. Food Technol Biotechnol 2018;56:312-328. [PMID: 30510475 PMCID: PMC6233012 DOI: 10.17113/ftb.56.03.18.5658] [Citation(s) in RCA: 69] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]  Open
6
Doré J, Multon MC, Béhier JM, Affagard H, Andremont A, Barthélémy P, Batista R, Bonneville M, Bonny C, Boyaval G, Chamaillard M, Chevalier MP, Cordaillat-Simmons M, Cournarie F, Diaz I, Guillaume E, Guyard C, Jouvin-Marche E, Martin FP, Petiteau D. Microbiote intestinal : qu’en attendre au plan physiologique et thérapeutique ? Therapie 2017;72:1-19. [PMID: 28214070 DOI: 10.1016/j.therap.2017.01.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 12/22/2016] [Indexed: 11/29/2022]
7
Doré J, Multon MC, Béhier JM. The human gut microbiome as source of innovation for health: Which physiological and therapeutic outcomes could we expect? Therapie 2017;72:21-38. [PMID: 28131442 DOI: 10.1016/j.therap.2016.12.007] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2016] [Accepted: 12/22/2016] [Indexed: 12/12/2022]
8
Yoon SS, Kim EK, Lee WJ. Functional genomic and metagenomic approaches to understanding gut microbiota-animal mutualism. Curr Opin Microbiol 2015;24:38-46. [PMID: 25625313 DOI: 10.1016/j.mib.2015.01.007] [Citation(s) in RCA: 37] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/15/2014] [Revised: 12/26/2014] [Accepted: 01/10/2015] [Indexed: 12/21/2022]
9
Wang WL, Xu SY, Ren ZG, Tao L, Jiang JW, Zheng SS. Application of metagenomics in the human gut microbiome. World J Gastroenterol 2015;21:803-814. [PMID: 25624713 PMCID: PMC4299332 DOI: 10.3748/wjg.v21.i3.803] [Citation(s) in RCA: 233] [Impact Index Per Article: 23.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/15/2014] [Revised: 09/30/2014] [Accepted: 11/07/2014] [Indexed: 02/06/2023]  Open
10
Functional metagenomics to decipher food–microbe–host crosstalk. Proc Nutr Soc 2014;74:1-4. [DOI: 10.1017/s0029665114001566] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2022]
11
Fouhy F, Ogilvie LA, Jones BV, Ross RP, Ryan AC, Dempsey EM, Fitzgerald GF, Stanton C, Cotter PD. Identification of aminoglycoside and β-lactam resistance genes from within an infant gut functional metagenomic library. PLoS One 2014;9:e108016. [PMID: 25247417 PMCID: PMC4172600 DOI: 10.1371/journal.pone.0108016] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2014] [Accepted: 08/21/2014] [Indexed: 12/22/2022]  Open
12
de Wouters T, Ledue F, Nepelska M, Doré J, Blottière HM, Lapaque N. A robust and adaptable high throughput screening method to study host-microbiota interactions in the human intestine. PLoS One 2014;9:e105598. [PMID: 25141006 PMCID: PMC4139392 DOI: 10.1371/journal.pone.0105598] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2014] [Accepted: 07/24/2014] [Indexed: 12/21/2022]  Open
13
Food Omics Validation: Towards Understanding Key Features for Gut Microbiota, Probiotics and Human Health. FOOD ANAL METHOD 2014. [DOI: 10.1007/s12161-014-9923-6] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
14
Smith MI, Turpin W, Tyler AD, Silverberg MS, Croitoru K. Microbiome analysis - from technical advances to biological relevance. F1000PRIME REPORTS 2014;6:51. [PMID: 25184041 PMCID: PMC4108955 DOI: 10.12703/p6-51] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
15
Kimura N. Metagenomic approaches to understanding phylogenetic diversity in quorum sensing. Virulence 2014;5:433-42. [PMID: 24429899 DOI: 10.4161/viru.27850] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
16
Omics approaches to study host-microbiota interactions. Curr Opin Microbiol 2013;16:270-7. [PMID: 23891019 DOI: 10.1016/j.mib.2013.07.001] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2013] [Revised: 06/25/2013] [Accepted: 07/01/2013] [Indexed: 02/08/2023]
17
Preparation of Fosmid Libraries and Functional Metagenomic Analysis of Microbial Community DNA. Methods Enzymol 2013;531:123-42. [DOI: 10.1016/b978-0-12-407863-5.00007-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
18
Bron PA, van Baarlen P, Kleerebezem M. Emerging molecular insights into the interaction between probiotics and the host intestinal mucosa. Nat Rev Microbiol 2011;10:66-78. [PMID: 22101918 DOI: 10.1038/nrmicro2690] [Citation(s) in RCA: 443] [Impact Index Per Article: 31.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
19
Moore AM, Munck C, Sommer MOA, Dantas G. Functional metagenomic investigations of the human intestinal microbiota. Front Microbiol 2011;2:188. [PMID: 22022321 PMCID: PMC3195301 DOI: 10.3389/fmicb.2011.00188] [Citation(s) in RCA: 38] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2011] [Accepted: 08/23/2011] [Indexed: 12/15/2022]  Open
20
Kaul P, Asano Y. Strategies for discovery and improvement of enzyme function: state of the art and opportunities. Microb Biotechnol 2011;5:18-33. [PMID: 21883976 PMCID: PMC3815269 DOI: 10.1111/j.1751-7915.2011.00280.x] [Citation(s) in RCA: 43] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
21
Kennedy J, O'Leary ND, Kiran GS, Morrissey JP, O'Gara F, Selvin J, Dobson ADW. Functional metagenomic strategies for the discovery of novel enzymes and biosurfactants with biotechnological applications from marine ecosystems. J Appl Microbiol 2011;111:787-99. [PMID: 21777355 DOI: 10.1111/j.1365-2672.2011.05106.x] [Citation(s) in RCA: 68] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]
22
Taupp M, Mewis K, Hallam SJ. The art and design of functional metagenomic screens. Curr Opin Biotechnol 2011;22:465-72. [PMID: 21440432 DOI: 10.1016/j.copbio.2011.02.010] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
23
Lakhdari O, Cultrone A, Tap J, Gloux K, Bernard F, Ehrlich SD, Lefèvre F, Doré J, Blottière HM. Functional metagenomics: a high throughput screening method to decipher microbiota-driven NF-κB modulation in the human gut. PLoS One 2010;5. [PMID: 20927194 PMCID: PMC2948039 DOI: 10.1371/journal.pone.0013092] [Citation(s) in RCA: 57] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2010] [Accepted: 09/09/2010] [Indexed: 12/12/2022]  Open
24
Doré J, Corthier G. The human intestinal microbiota. ACTA ACUST UNITED AC 2010;34 Suppl 1:S7-15. [DOI: 10.1016/s0399-8320(10)70015-4] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
25
Corthier G, Doré J. A new era in gut research concerning interactions between microbiota and human health. ACTA ACUST UNITED AC 2010;34 Suppl 1:S1-6. [DOI: 10.1016/s0399-8320(10)70014-2] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
26
Rajendhran J, Gunasekaran P. Human microbiomics. Indian J Microbiol 2010;50:109-12. [PMID: 23100817 DOI: 10.1007/s12088-010-0034-9] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2009] [Accepted: 05/20/2009] [Indexed: 01/10/2023]  Open
27
Jankovic I, Sybesma W, Phothirath P, Ananta E, Mercenier A. Application of probiotics in food products—challenges and new approaches. Curr Opin Biotechnol 2010;21:175-81. [DOI: 10.1016/j.copbio.2010.03.009] [Citation(s) in RCA: 76] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/16/2009] [Accepted: 03/10/2010] [Indexed: 12/18/2022]
28
Functional metagenomics for enzyme discovery: challenges to efficient screening. Curr Opin Biotechnol 2009;20:616-22. [DOI: 10.1016/j.copbio.2009.09.010] [Citation(s) in RCA: 244] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2009] [Revised: 09/18/2009] [Accepted: 09/25/2009] [Indexed: 11/17/2022]
29
Drugs from hidden bugs: their discovery via untapped resources. Res Microbiol 2008;159:153-61. [DOI: 10.1016/j.resmic.2007.12.011] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/07/2007] [Revised: 12/07/2007] [Accepted: 12/11/2007] [Indexed: 01/01/2023]
30
Marchesi J, Shanahan F. The normal intestinal microbiota. Curr Opin Infect Dis 2007;20:508-13. [PMID: 17762785 DOI: 10.1097/qco.0b013e3282a56a99] [Citation(s) in RCA: 90] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
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