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For: Xu M, Schnorr J, Keibler B, Simon HM. Comparative analysis of 16S rRNA and amoA genes from archaea selected with organic and inorganic amendments in enrichment culture. Appl Environ Microbiol 2012;78:2137-46. [PMID: 22267662 DOI: 10.1128/AEM.06845-11] [Citation(s) in RCA: 30] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
Number Cited by Other Article(s)
1
Alves RJE, Kerou M, Zappe A, Bittner R, Abby SS, Schmidt HA, Pfeifer K, Schleper C. Ammonia Oxidation by the Arctic Terrestrial Thaumarchaeote Candidatus Nitrosocosmicus arcticus Is Stimulated by Increasing Temperatures. Front Microbiol 2019;10:1571. [PMID: 31379764 PMCID: PMC6657660 DOI: 10.3389/fmicb.2019.01571] [Citation(s) in RCA: 34] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2019] [Accepted: 06/24/2019] [Indexed: 11/13/2022]  Open
2
Liu H, Li J, Zhao Y, Xie K, Tang X, Wang S, Li Z, Liao Y, Xu J, Di H, Li Y. Ammonia oxidizers and nitrite-oxidizing bacteria respond differently to long-term manure application in four paddy soils of south of China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018;633:641-648. [PMID: 29597161 DOI: 10.1016/j.scitotenv.2018.03.108] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/19/2018] [Revised: 03/09/2018] [Accepted: 03/09/2018] [Indexed: 06/08/2023]
3
Wang J, Ni L, Song Y, Rhodes G, Li J, Huang Q, Shen Q. Dynamic Response of Ammonia-Oxidizers to Four Fertilization Regimes across a Wheat-Rice Rotation System. Front Microbiol 2017;8:630. [PMID: 28446904 PMCID: PMC5388685 DOI: 10.3389/fmicb.2017.00630] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2016] [Accepted: 03/28/2017] [Indexed: 11/23/2022]  Open
4
Jung MY, Kim JG, Sinninghe Damsté JS, Rijpstra WIC, Madsen EL, Kim SJ, Hong H, Si OJ, Kerou M, Schleper C, Rhee SK. A hydrophobic ammonia-oxidizing archaeon of the Nitrosocosmicus clade isolated from coal tar-contaminated sediment. ENVIRONMENTAL MICROBIOLOGY REPORTS 2016;8:983-992. [PMID: 27700018 DOI: 10.1111/1758-2229.12477] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/19/2016] [Revised: 09/20/2016] [Accepted: 09/20/2016] [Indexed: 06/06/2023]
5
Awolusi OO, Nasr M, Kumari S, Bux F. Artificial Intelligence for the Evaluation of Operational Parameters Influencing Nitrification and Nitrifiers in an Activated Sludge Process. MICROBIAL ECOLOGY 2016;72:49-63. [PMID: 26906468 DOI: 10.1007/s00248-016-0739-3] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/31/2015] [Accepted: 02/08/2016] [Indexed: 06/05/2023]
6
Smith MW, Davis RE, Youngblut ND, Kärnä T, Herfort L, Whitaker RJ, Metcalf WW, Tebo BM, Baptista AM, Simon HM. Metagenomic evidence for reciprocal particle exchange between the mainstem estuary and lateral bay sediments of the lower Columbia River. Front Microbiol 2015;6:1074. [PMID: 26483785 PMCID: PMC4589670 DOI: 10.3389/fmicb.2015.01074] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2015] [Accepted: 09/18/2015] [Indexed: 11/27/2022]  Open
7
Wu Y, Conrad R. Ammonia oxidation-dependent growth of group I.1b Thaumarchaeota in acidic red soil microcosms. FEMS Microbiol Ecol 2014;89:127-34. [PMID: 24724989 DOI: 10.1111/1574-6941.12340] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2013] [Revised: 02/17/2014] [Accepted: 04/03/2014] [Indexed: 11/28/2022]  Open
8
Hernández M, Dumont MG, Calabi M, Basualto D, Conrad R. Ammonia oxidizers are pioneer microorganisms in the colonization of new acidic volcanic soils from South of Chile. ENVIRONMENTAL MICROBIOLOGY REPORTS 2014;6:70-79. [PMID: 24596264 DOI: 10.1111/1758-2229.12109] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/15/2013] [Accepted: 09/14/2013] [Indexed: 06/03/2023]
9
Stauffert M, Duran R, Gassie C, Cravo-Laureau C. Response of archaeal communities to oil spill in bioturbated mudflat sediments. MICROBIAL ECOLOGY 2014;67:108-119. [PMID: 24057322 DOI: 10.1007/s00248-013-0288-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/06/2013] [Accepted: 09/03/2013] [Indexed: 06/02/2023]
10
Rubin-Blum M, Antler G, Turchyn AV, Tsadok R, Goodman-Tchernov BN, Shemesh E, Austin JA, Coleman DF, Makovsky Y, Sivan O, Tchernov D. Hydrocarbon-related microbial processes in the deep sediments of the Eastern Mediterranean Levantine Basin. FEMS Microbiol Ecol 2013;87:780-96. [DOI: 10.1111/1574-6941.12264] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2013] [Revised: 11/08/2013] [Accepted: 11/20/2013] [Indexed: 11/28/2022]  Open
11
Ke X, Lu Y, Conrad R. Different behaviour of methanogenic archaea and Thaumarchaeota in rice field microcosms. FEMS Microbiol Ecol 2013;87:18-29. [PMID: 23909555 DOI: 10.1111/1574-6941.12188] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2013] [Revised: 07/26/2013] [Accepted: 07/26/2013] [Indexed: 11/27/2022]  Open
12
Alves RJE, Wanek W, Zappe A, Richter A, Svenning MM, Schleper C, Urich T. Nitrification rates in Arctic soils are associated with functionally distinct populations of ammonia-oxidizing archaea. THE ISME JOURNAL 2013;7:1620-31. [PMID: 23466705 PMCID: PMC3721107 DOI: 10.1038/ismej.2013.35] [Citation(s) in RCA: 87] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Revised: 01/29/2013] [Accepted: 01/31/2013] [Indexed: 11/09/2022]
13
Herrmann M, Hädrich A, Küsel K. Predominance of thaumarchaeal ammonia oxidizer abundance and transcriptional activity in an acidic fen. Environ Microbiol 2012;14:3013-25. [PMID: 23016896 DOI: 10.1111/j.1462-2920.2012.02882.x] [Citation(s) in RCA: 53] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2012] [Accepted: 08/23/2012] [Indexed: 11/27/2022]
14
Diversity, physiology, and niche differentiation of ammonia-oxidizing archaea. Appl Environ Microbiol 2012;78:7501-10. [PMID: 22923400 DOI: 10.1128/aem.01960-12] [Citation(s) in RCA: 253] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
15
French E, Kozlowski JA, Mukherjee M, Bullerjahn G, Bollmann A. Ecophysiological characterization of ammonia-oxidizing archaea and bacteria from freshwater. Appl Environ Microbiol 2012;78:5773-80. [PMID: 22685142 PMCID: PMC3406153 DOI: 10.1128/aem.00432-12] [Citation(s) in RCA: 101] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2012] [Accepted: 05/30/2012] [Indexed: 11/20/2022]  Open
16
de Gannes V, Eudoxie G, Dyer DH, Hickey WJ. Diversity and abundance of ammonia oxidizing archaea in tropical compost systems. Front Microbiol 2012;3:244. [PMID: 22787457 PMCID: PMC3391690 DOI: 10.3389/fmicb.2012.00244] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2012] [Accepted: 06/18/2012] [Indexed: 11/13/2022]  Open
17
Zhalnina K, de Quadros PD, Camargo FAO, Triplett EW. Drivers of archaeal ammonia-oxidizing communities in soil. Front Microbiol 2012;3:210. [PMID: 22715335 PMCID: PMC3375578 DOI: 10.3389/fmicb.2012.00210] [Citation(s) in RCA: 67] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2012] [Accepted: 05/22/2012] [Indexed: 01/24/2023]  Open
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