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For: Le Mouël A, Butler A, Caron F, Meyer E. Developmentally regulated chromosome fragmentation linked to imprecise elimination of repeated sequences in paramecia. Eukaryot Cell 2004;2:1076-90. [PMID: 14555491 PMCID: PMC219357 DOI: 10.1128/ec.2.5.1076-1090.2003] [Citation(s) in RCA: 71] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Number Cited by Other Article(s)
1
Fu Y, Ni P, Zhang Y, Liang F, Stover NA, Li L. The genome and comparative transcriptome of the euryhaline model ciliate Paramecium duboscqui reveal adaptations to environmental salinity. BMC Biol 2024;22:237. [PMID: 39407207 PMCID: PMC11476214 DOI: 10.1186/s12915-024-02026-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Accepted: 09/30/2024] [Indexed: 10/20/2024]  Open
2
Seah BKB, Singh A, Vetter DE, Emmerich C, Peters M, Soltys V, Huettel B, Swart EC. Nuclear dualism without extensive DNA elimination in the ciliate Loxodes magnus. Proc Natl Acad Sci U S A 2024;121:e2400503121. [PMID: 39298487 PMCID: PMC11441545 DOI: 10.1073/pnas.2400503121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/17/2024] [Accepted: 08/08/2024] [Indexed: 09/21/2024]  Open
3
Bischerour J, Arnaiz O, Zangarelli C, Régnier V, Iehl F, Ropars V, Charbonnier JB, Bétermier M. Uncoupling programmed DNA cleavage and repair scrambles the Paramecium somatic genome. Cell Rep 2024;43:114001. [PMID: 38547127 DOI: 10.1016/j.celrep.2024.114001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2023] [Revised: 01/24/2024] [Accepted: 03/11/2024] [Indexed: 04/28/2024]  Open
4
Bétermier M, Klobutcher LA, Orias E. Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends. Microbiol Mol Biol Rev 2023;87:e0018422. [PMID: 38009915 PMCID: PMC10732028 DOI: 10.1128/mmbr.00184-22] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]  Open
5
Bazin-Gélis M, Eleftheriou E, Zangarelli C, Lelandais G, Sperling L, Arnaiz O, Bétermier M. Inter-generational nuclear crosstalk links the control of gene expression to programmed genome rearrangement during the Paramecium sexual cycle. Nucleic Acids Res 2023;51:12337-12351. [PMID: 37953377 PMCID: PMC10711438 DOI: 10.1093/nar/gkad1006] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2023] [Revised: 10/09/2023] [Accepted: 10/23/2023] [Indexed: 11/14/2023]  Open
6
Van Houten J. A Review for the Special Issue on Paramecium as a Modern Model Organism. Microorganisms 2023;11:937. [PMID: 37110360 PMCID: PMC10143506 DOI: 10.3390/microorganisms11040937] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2023] [Revised: 03/28/2023] [Accepted: 03/29/2023] [Indexed: 04/07/2023]  Open
7
Seah BK, Singh M, Emmerich C, Singh A, Woehle C, Huettel B, Byerly A, Stover NA, Sugiura M, Harumoto T, Swart EC. MITE infestation accommodated by genome editing in the germline genome of the ciliate Blepharisma. Proc Natl Acad Sci U S A 2023;120:e2213985120. [PMID: 36669106 PMCID: PMC9942856 DOI: 10.1073/pnas.2213985120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2022] [Accepted: 12/06/2022] [Indexed: 01/21/2023]  Open
8
Wang C, Solberg T, Maurer-Alcalá XX, Swart EC, Gao F, Nowacki M. A small RNA-guided PRC2 complex eliminates DNA as an extreme form of transposon silencing. Cell Rep 2022;40:111263. [PMID: 36001962 PMCID: PMC10073204 DOI: 10.1016/j.celrep.2022.111263] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2021] [Revised: 06/27/2022] [Accepted: 08/04/2022] [Indexed: 01/04/2023]  Open
9
Zhou Y, Fu L, Mochizuki K, Xiong J, Miao W, Wang G. Absolute quantification of chromosome copy numbers in the polyploid macronucleus of Tetrahymena thermophila at the single-cell level. J Eukaryot Microbiol 2022;69:e12907. [PMID: 35313044 DOI: 10.1111/jeu.12907] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
10
Zangarelli C, Arnaiz O, Bourge M, Gorrichon K, Jaszczyszyn Y, Mathy N, Escoriza L, Bétermier M, Régnier V. Developmental timing of programmed DNA elimination in Paramecium tetraurelia recapitulates germline transposon evolutionary dynamics. Genome Res 2022;32:2028-2042. [PMID: 36418061 PMCID: PMC9808624 DOI: 10.1101/gr.277027.122] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2022] [Accepted: 11/11/2022] [Indexed: 11/24/2022]
11
Sellis D, Guérin F, Arnaiz O, Pett W, Lerat E, Boggetto N, Krenek S, Berendonk T, Couloux A, Aury JM, Labadie K, Malinsky S, Bhullar S, Meyer E, Sperling L, Duret L, Duharcourt S. Massive colonization of protein-coding exons by selfish genetic elements in Paramecium germline genomes. PLoS Biol 2021;19:e3001309. [PMID: 34324490 PMCID: PMC8354472 DOI: 10.1371/journal.pbio.3001309] [Citation(s) in RCA: 27] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2021] [Revised: 08/10/2021] [Accepted: 06/04/2021] [Indexed: 11/18/2022]  Open
12
Cancer cells employ an evolutionarily conserved polyploidization program to resist therapy. Semin Cancer Biol 2020;81:145-159. [PMID: 33276091 DOI: 10.1016/j.semcancer.2020.11.016] [Citation(s) in RCA: 50] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2020] [Revised: 11/24/2020] [Accepted: 11/25/2020] [Indexed: 12/24/2022]
13
Cheng YH, Liu CFJ, Yu YH, Jhou YT, Fujishima M, Tsai IJ, Leu JY. Genome plasticity in Paramecium bursaria revealed by population genomics. BMC Biol 2020;18:180. [PMID: 33250052 PMCID: PMC7702705 DOI: 10.1186/s12915-020-00912-2] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2019] [Accepted: 10/29/2020] [Indexed: 11/25/2022]  Open
14
Rzeszutek I, Maurer-Alcalá XX, Nowacki M. Programmed genome rearrangements in ciliates. Cell Mol Life Sci 2020;77:4615-4629. [PMID: 32462406 PMCID: PMC7599177 DOI: 10.1007/s00018-020-03555-2] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2020] [Revised: 05/11/2020] [Accepted: 05/15/2020] [Indexed: 12/14/2022]
15
Van Houten J. Paramecium Biology. Results Probl Cell Differ 2019;68:291-318. [PMID: 31598862 DOI: 10.1007/978-3-030-23459-1_13] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
16
Duharcourt S, Sperling L. The Challenges of Genome-Wide Studies in a Unicellular Eukaryote With Two Nuclear Genomes. Methods Enzymol 2018;612:101-126. [PMID: 30502938 DOI: 10.1016/bs.mie.2018.08.012] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
17
Gruchota J, Denby Wilkes C, Arnaiz O, Sperling L, Nowak JK. A meiosis-specific Spt5 homolog involved in non-coding transcription. Nucleic Acids Res 2017;45:4722-4732. [PMID: 28053118 PMCID: PMC5416832 DOI: 10.1093/nar/gkw1318] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2016] [Accepted: 12/20/2016] [Indexed: 12/18/2022]  Open
18
Dubois E, Mathy N, Régnier V, Bischerour J, Baudry C, Trouslard R, Bétermier M. Multimerization properties of PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements. Nucleic Acids Res 2017;45:3204-3216. [PMID: 28104713 PMCID: PMC5389696 DOI: 10.1093/nar/gkw1359] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2016] [Accepted: 12/28/2016] [Indexed: 02/05/2023]  Open
19
Guérin F, Arnaiz O, Boggetto N, Denby Wilkes C, Meyer E, Sperling L, Duharcourt S. Flow cytometry sorting of nuclei enables the first global characterization of Paramecium germline DNA and transposable elements. BMC Genomics 2017;18:327. [PMID: 28446146 PMCID: PMC5405496 DOI: 10.1186/s12864-017-3713-7] [Citation(s) in RCA: 43] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/24/2016] [Accepted: 04/20/2017] [Indexed: 12/02/2022]  Open
20
Hamilton EP, Kapusta A, Huvos PE, Bidwell SL, Zafar N, Tang H, Hadjithomas M, Krishnakumar V, Badger JH, Caler EV, Russ C, Zeng Q, Fan L, Levin JZ, Shea T, Young SK, Hegarty R, Daza R, Gujja S, Wortman JR, Birren BW, Nusbaum C, Thomas J, Carey CM, Pritham EJ, Feschotte C, Noto T, Mochizuki K, Papazyan R, Taverna SD, Dear PH, Cassidy-Hanley DM, Xiong J, Miao W, Orias E, Coyne RS. Structure of the germline genome of Tetrahymena thermophila and relationship to the massively rearranged somatic genome. eLife 2016;5. [PMID: 27892853 PMCID: PMC5182062 DOI: 10.7554/elife.19090] [Citation(s) in RCA: 113] [Impact Index Per Article: 12.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2016] [Accepted: 11/14/2016] [Indexed: 12/30/2022]  Open
21
Programmed Rearrangement in Ciliates: Paramecium. Microbiol Spectr 2016;2. [PMID: 26104450 DOI: 10.1128/microbiolspec.mdna3-0035-2014] [Citation(s) in RCA: 54] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]  Open
22
Chen X, Landweber LF. Phylogenomic analysis reveals genome-wide purifying selection on TBE transposons in the ciliate Oxytricha. Mob DNA 2016;7:2. [PMID: 26811739 PMCID: PMC4724952 DOI: 10.1186/s13100-016-0057-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2015] [Accepted: 01/05/2016] [Indexed: 12/14/2022]  Open
23
Arambasic M, Sandoval PY, Hoehener C, Singh A, Swart EC, Nowacki M. Pdsg1 and Pdsg2, novel proteins involved in developmental genome remodelling in Paramecium. PLoS One 2014;9:e112899. [PMID: 25397898 PMCID: PMC4232520 DOI: 10.1371/journal.pone.0112899] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2014] [Accepted: 10/16/2014] [Indexed: 01/25/2023]  Open
24
Baranasic D, Oppermann T, Cheaib M, Cullum J, Schmidt H, Simon M. Genomic characterization of variable surface antigens reveals a telomere position effect as a prerequisite for RNA interference-mediated silencing in Paramecium tetraurelia. mBio 2014;5:e01328. [PMID: 25389173 PMCID: PMC4235209 DOI: 10.1128/mbio.01328-14] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2014] [Accepted: 06/24/2014] [Indexed: 12/02/2022]  Open
25
Ignarski M, Singh A, Swart EC, Arambasic M, Sandoval PY, Nowacki M. Paramecium tetraurelia chromatin assembly factor-1-like protein PtCAF-1 is involved in RNA-mediated control of DNA elimination. Nucleic Acids Res 2014;42:11952-64. [PMID: 25270876 PMCID: PMC4231744 DOI: 10.1093/nar/gku874] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
26
Swart EC, Wilkes CD, Sandoval PY, Arambasic M, Sperling L, Nowacki M. Genome-wide analysis of genetic and epigenetic control of programmed DNA deletion. Nucleic Acids Res 2014;42:8970-83. [PMID: 25016527 PMCID: PMC4132734 DOI: 10.1093/nar/gku619] [Citation(s) in RCA: 33] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]  Open
27
Chalker DL, Meyer E, Mochizuki K. Epigenetics of ciliates. Cold Spring Harb Perspect Biol 2013;5:a017764. [PMID: 24296171 DOI: 10.1101/cshperspect.a017764] [Citation(s) in RCA: 73] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
28
Feng X, Guang S. Non-coding RNAs mediate the rearrangements of genomic DNA in ciliates. SCIENCE CHINA-LIFE SCIENCES 2013;56:937-43. [PMID: 24008384 DOI: 10.1007/s11427-013-4539-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/01/2013] [Accepted: 08/10/2013] [Indexed: 01/24/2023]
29
Vogt A, Goldman AD, Mochizuki K, Landweber LF. Transposon domestication versus mutualism in ciliate genome rearrangements. PLoS Genet 2013;9:e1003659. [PMID: 23935529 PMCID: PMC3731211 DOI: 10.1371/journal.pgen.1003659] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]  Open
30
Morgens DW, Lindbergh KM, Adachi M, Radunskaya A, Cavalcanti ARO. A model for the evolution of extremely fragmented macronuclei in ciliates. PLoS One 2013;8:e64997. [PMID: 23705024 PMCID: PMC3660376 DOI: 10.1371/journal.pone.0064997] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2012] [Accepted: 04/22/2013] [Indexed: 11/19/2022]  Open
31
Genomes on the edge: programmed genome instability in ciliates. Cell 2013;152:406-16. [PMID: 23374338 DOI: 10.1016/j.cell.2013.01.005] [Citation(s) in RCA: 68] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/23/2012] [Indexed: 01/15/2023]
32
Swart EC, Bracht JR, Magrini V, Minx P, Chen X, Zhou Y, Khurana JS, Goldman AD, Nowacki M, Schotanus K, Jung S, Fulton RS, Ly A, McGrath S, Haub K, Wiggins JL, Storton D, Matese JC, Parsons L, Chang WJ, Bowen MS, Stover NA, Jones TA, Eddy SR, Herrick GA, Doak TG, Wilson RK, Mardis ER, Landweber LF. The Oxytricha trifallax macronuclear genome: a complex eukaryotic genome with 16,000 tiny chromosomes. PLoS Biol 2013;11:e1001473. [PMID: 23382650 PMCID: PMC3558436 DOI: 10.1371/journal.pbio.1001473] [Citation(s) in RCA: 162] [Impact Index Per Article: 13.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2012] [Accepted: 12/12/2012] [Indexed: 01/03/2023]  Open
33
The Paramecium germline genome provides a niche for intragenic parasitic DNA: evolutionary dynamics of internal eliminated sequences. PLoS Genet 2012;8:e1002984. [PMID: 23071448 PMCID: PMC3464196 DOI: 10.1371/journal.pgen.1002984] [Citation(s) in RCA: 128] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2012] [Accepted: 08/09/2012] [Indexed: 12/30/2022]  Open
34
Transposon Invasion of the Paramecium Germline Genome Countered by a Domesticated PiggyBac Transposase and the NHEJ Pathway. INTERNATIONAL JOURNAL OF EVOLUTIONARY BIOLOGY 2012;2012:436196. [PMID: 22888464 PMCID: PMC3408717 DOI: 10.1155/2012/436196] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2012] [Accepted: 05/07/2012] [Indexed: 12/15/2022]
35
Lin IT, Chao JL, Yao MC. An essential role for the DNA breakage-repair protein Ku80 in programmed DNA rearrangements in Tetrahymena thermophila. Mol Biol Cell 2012;23:2213-25. [PMID: 22513090 PMCID: PMC3364183 DOI: 10.1091/mbc.e11-11-0952] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]  Open
36
Coyne RS, Lhuillier-Akakpo M, Duharcourt S. RNA-guided DNA rearrangements in ciliates: is the best genome defence a good offence? Biol Cell 2012;104:309-25. [PMID: 22352444 DOI: 10.1111/boc.201100057] [Citation(s) in RCA: 45] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2011] [Accepted: 02/15/2012] [Indexed: 12/13/2022]
37
Nowacki M, Shetty K, Landweber LF. RNA-Mediated Epigenetic Programming of Genome Rearrangements. Annu Rev Genomics Hum Genet 2011;12:367-89. [PMID: 21801022 DOI: 10.1146/annurev-genom-082410-101420] [Citation(s) in RCA: 56] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
38
Schoeberl UE, Mochizuki K. Keeping the soma free of transposons: programmed DNA elimination in ciliates. J Biol Chem 2011;286:37045-52. [PMID: 21914793 DOI: 10.1074/jbc.r111.276964] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]  Open
39
Chalker DL, Yao MC. DNA elimination in ciliates: transposon domestication and genome surveillance. Annu Rev Genet 2011;45:227-46. [PMID: 21910632 DOI: 10.1146/annurev-genet-110410-132432] [Citation(s) in RCA: 106] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
40
Sperling L. Remembrance of things past retrieved from the Paramecium genome. Res Microbiol 2011;162:587-97. [DOI: 10.1016/j.resmic.2011.02.012] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2011] [Accepted: 02/17/2011] [Indexed: 11/30/2022]
41
Kapusta A, Matsuda A, Marmignon A, Ku M, Silve A, Meyer E, Forney JD, Malinsky S, Bétermier M. Highly precise and developmentally programmed genome assembly in Paramecium requires ligase IV-dependent end joining. PLoS Genet 2011;7:e1002049. [PMID: 21533177 PMCID: PMC3077386 DOI: 10.1371/journal.pgen.1002049] [Citation(s) in RCA: 50] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/22/2010] [Accepted: 02/25/2011] [Indexed: 01/09/2023]  Open
42
Functional study of genes essential for autogamy and nuclear reorganization in Paramecium. EUKARYOTIC CELL 2011;10:363-72. [PMID: 21257794 DOI: 10.1128/ec.00258-10] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
43
Bouhouche K, Gout JF, Kapusta A, Bétermier M, Meyer E. Functional specialization of Piwi proteins in Paramecium tetraurelia from post-transcriptional gene silencing to genome remodelling. Nucleic Acids Res 2011;39:4249-64. [PMID: 21216825 PMCID: PMC3105430 DOI: 10.1093/nar/gkq1283] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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Rautian MS. Molecular genome organization in ciliates. RUSS J GENET+ 2010. [DOI: 10.1134/s1022795410090115] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
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NEKRASOVA IRINAV, PRZYBOŚ EWA, RAUTIAN MARIAS, POTEKHIN ALEXEYA. Electrophoretic Karyotype Polymorphism of Sibling Species of the Paramecium aurelia Complex. J Eukaryot Microbiol 2010;57:494-507. [DOI: 10.1111/j.1550-7408.2010.00507.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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Matsuda A, Shieh AWY, Chalker DL, Forney JD. The conjugation-specific Die5 protein is required for development of the somatic nucleus in both Paramecium and Tetrahymena. EUKARYOTIC CELL 2010;9:1087-99. [PMID: 20495055 PMCID: PMC2901671 DOI: 10.1128/ec.00379-09] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/19/2009] [Accepted: 05/14/2010] [Indexed: 02/02/2023]
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Beisson J, Bétermier M, Bré MH, Cohen J, Duharcourt S, Duret L, Kung C, Malinsky S, Meyer E, Preer JR, Sperling L. Paramecium tetraurelia: the renaissance of an early unicellular model. Cold Spring Harb Protoc 2010;2010:pdb.emo140. [PMID: 20150105 DOI: 10.1101/pdb.emo140] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Nishiyama N, Mikami K, Matsuoka A, Ochiai T, Yamauchi K. Extreme heterogeneous composition of the Paramecium caudatum macronuclear genomic DNA between hemoglobin and nucleosome assembly protein-1 genes. Genes Genet Syst 2010;85:9-17. [PMID: 20410661 DOI: 10.1266/ggs.85.9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]  Open
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Motl JA, Chalker DL. Subtraction by addition: domesticated transposases in programmed DNA elimination. Genes Dev 2009;23:2455-60. [PMID: 19884252 DOI: 10.1101/gad.1864609] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]
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Baudry C, Malinsky S, Restituito M, Kapusta A, Rosa S, Meyer E, Bétermier M. PiggyMac, a domesticated piggyBac transposase involved in programmed genome rearrangements in the ciliate Paramecium tetraurelia. Genes Dev 2009;23:2478-83. [PMID: 19884254 DOI: 10.1101/gad.547309] [Citation(s) in RCA: 153] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
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