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For: Wuitschick JD, Lindstrom PR, Meyer AE, Karrer KM. Homing endonucleases encoded by germ line-limited genes in Tetrahymena thermophila have APETELA2 DNA binding domains. Eukaryot Cell 2005;3:685-94. [PMID: 15189989 PMCID: PMC420138 DOI: 10.1128/ec.3.3.685-694.2004] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Number Cited by Other Article(s)
1
Bétermier M, Klobutcher LA, Orias E. Programmed chromosome fragmentation in ciliated protozoa: multiple means to chromosome ends. Microbiol Mol Biol Rev 2023;87:e0018422. [PMID: 38009915 PMCID: PMC10732028 DOI: 10.1128/mmbr.00184-22] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2023]  Open
2
Cui M, Haider MS, Chai P, Guo J, Du P, Li H, Dong W, Huang B, Zheng Z, Shi L, Zhang X, Han S. Genome-Wide Identification and Expression Analysis of AP2/ERF Transcription Factor Related to Drought Stress in Cultivated Peanut (Arachis hypogaea L.). Front Genet 2021;12:750761. [PMID: 34721538 PMCID: PMC8548641 DOI: 10.3389/fgene.2021.750761] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Accepted: 09/17/2021] [Indexed: 11/13/2022]  Open
3
Singh K, Chandra A. DREBs-potential transcription factors involve in combating abiotic stress tolerance in plants. Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00840-8] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
4
Song Q, Bari A, Li H, Chen LL. Identification and analysis of micro-exons in AP2/ERF and MADS gene families. FEBS Open Bio 2020;10:2564-2577. [PMID: 32986930 PMCID: PMC7714060 DOI: 10.1002/2211-5463.12990] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2020] [Revised: 09/04/2020] [Accepted: 09/23/2020] [Indexed: 11/12/2022]  Open
5
Li MY, Liu JX, Hao JN, Feng K, Duan AQ, Yang QQ, Xu ZS, Xiong AS. Genomic identification of AP2/ERF transcription factors and functional characterization of two cold resistance-related AP2/ERF genes in celery (Apium graveolens L.). PLANTA 2019;250:1265-1280. [PMID: 31236696 DOI: 10.1007/s00425-019-03222-2] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2019] [Accepted: 06/20/2019] [Indexed: 05/09/2023]
6
Phukan UJ, Jeena GS, Tripathi V, Shukla RK. Regulation of Apetala2/Ethylene Response Factors in Plants. FRONTIERS IN PLANT SCIENCE 2017;8:150. [PMID: 28270817 PMCID: PMC5318435 DOI: 10.3389/fpls.2017.00150] [Citation(s) in RCA: 107] [Impact Index Per Article: 13.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/24/2016] [Accepted: 01/25/2017] [Indexed: 05/18/2023]
7
Krupovic M, Yutin N, Koonin EV. Fusion of a superfamily 1 helicase and an inactivated DNA polymerase is a signature of common evolutionary history of Polintons, polinton-like viruses, Tlr1 transposons and transpovirons. Virus Evol 2016;2:vew019. [PMID: 28694999 PMCID: PMC5499653 DOI: 10.1093/ve/vew019] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
8
Genome-wide analysis of AP2/ERF transcription factors in carrot (Daucus carota L.) reveals evolution and expression profiles under abiotic stress. Mol Genet Genomics 2015;290:2049-61. [PMID: 25971861 DOI: 10.1007/s00438-015-1061-3] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2015] [Accepted: 05/02/2015] [Indexed: 12/14/2022]
9
Oberstaller J, Pumpalova Y, Schieler A, Llinás M, Kissinger JC. The Cryptosporidium parvum ApiAP2 gene family: insights into the evolution of apicomplexan AP2 regulatory systems. Nucleic Acids Res 2014;42:8271-84. [PMID: 24957599 PMCID: PMC4117751 DOI: 10.1093/nar/gku500] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/03/2014] [Revised: 05/15/2014] [Accepted: 05/19/2014] [Indexed: 01/13/2023]  Open
10
Horstman A, Willemsen V, Boutilier K, Heidstra R. AINTEGUMENTA-LIKE proteins: hubs in a plethora of networks. TRENDS IN PLANT SCIENCE 2014;19:146-57. [PMID: 24280109 DOI: 10.1016/j.tplants.2013.10.010] [Citation(s) in RCA: 120] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2013] [Revised: 10/24/2013] [Accepted: 10/27/2013] [Indexed: 05/18/2023]
11
Yamasaki K, Kigawa T, Seki M, Shinozaki K, Yokoyama S. DNA-binding domains of plant-specific transcription factors: structure, function, and evolution. TRENDS IN PLANT SCIENCE 2013;18:267-76. [PMID: 23040085 DOI: 10.1016/j.tplants.2012.09.001] [Citation(s) in RCA: 164] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2012] [Revised: 08/10/2012] [Accepted: 09/04/2012] [Indexed: 05/02/2023]
12
Rashid M, Guangyuan H, Guangxiao Y, Hussain J, Xu Y. AP2/ERF Transcription Factor in Rice: Genome-Wide Canvas and Syntenic Relationships between Monocots and Eudicots. Evol Bioinform Online 2012;8:321-55. [PMID: 22807623 PMCID: PMC3396566 DOI: 10.4137/ebo.s9369] [Citation(s) in RCA: 121] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
13
Dinh TT, Girke T, Liu X, Yant L, Schmid M, Chen X. The floral homeotic protein APETALA2 recognizes and acts through an AT-rich sequence element. Development 2012;139:1978-86. [PMID: 22513376 DOI: 10.1242/dev.077073] [Citation(s) in RCA: 74] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
14
Karrer KM. Nuclear dualism. Methods Cell Biol 2012;109:29-52. [PMID: 22444142 DOI: 10.1016/b978-0-12-385967-9.00003-7] [Citation(s) in RCA: 40] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
15
Petrov VM, Ratnayaka S, Nolan JM, Miller ES, Karam JD. Genomes of the T4-related bacteriophages as windows on microbial genome evolution. Virol J 2010;7:292. [PMID: 21029436 PMCID: PMC2993671 DOI: 10.1186/1743-422x-7-292] [Citation(s) in RCA: 130] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2010] [Accepted: 10/28/2010] [Indexed: 11/30/2022]  Open
16
Altschul SF, Wootton JC, Zaslavsky E, Yu YK. The construction and use of log-odds substitution scores for multiple sequence alignment. PLoS Comput Biol 2010;6:e1000852. [PMID: 20657661 PMCID: PMC2904766 DOI: 10.1371/journal.pcbi.1000852] [Citation(s) in RCA: 49] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2009] [Accepted: 06/03/2010] [Indexed: 01/18/2023]  Open
17
Rashotte AM, Goertzen LR. The CRF domain defines cytokinin response factor proteins in plants. BMC PLANT BIOLOGY 2010;10:74. [PMID: 20420680 PMCID: PMC3095348 DOI: 10.1186/1471-2229-10-74] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2009] [Accepted: 04/26/2010] [Indexed: 05/15/2023]
18
Shukla RK, Tripathi V, Jain D, Yadav RK, Chattopadhyay D. CAP2 enhances germination of transgenic tobacco seeds at high temperature and promotes heat stress tolerance in yeast. FEBS J 2009;276:5252-62. [PMID: 19674105 DOI: 10.1111/j.1742-4658.2009.07219.x] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
19
Hamilton EP, Williamson S, Dunn S, Merriam V, Lin C, Vong L, Russell-Colantonio J, Orias E. The highly conserved family of Tetrahymena thermophila chromosome breakage elements contains an invariant 10-base-pair core. EUKARYOTIC CELL 2006;5:771-80. [PMID: 16607024 PMCID: PMC1459666 DOI: 10.1128/ec.5.4.771-780.2006] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
20
Şahin-Çevik M, Moore GA. Two AP2 domain containing genes isolated from the cold-hardy Citrus relative Poncirus trifoliata are induced in response to cold. FUNCTIONAL PLANT BIOLOGY : FPB 2006;33:863-875. [PMID: 32689297 DOI: 10.1071/fp06005] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2006] [Accepted: 05/10/2006] [Indexed: 06/11/2023]
21
Petrov VM, Nolan JM, Bertrand C, Levy D, Desplats C, Krisch HM, Karam JD. Plasticity of the gene functions for DNA replication in the T4-like phages. J Mol Biol 2006;361:46-68. [PMID: 16828113 DOI: 10.1016/j.jmb.2006.05.071] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2006] [Revised: 05/24/2006] [Accepted: 05/31/2006] [Indexed: 10/24/2022]
22
Dunin-Horkawicz S, Feder M, Bujnicki JM. Phylogenomic analysis of the GIY-YIG nuclease superfamily. BMC Genomics 2006;7:98. [PMID: 16646971 PMCID: PMC1564403 DOI: 10.1186/1471-2164-7-98] [Citation(s) in RCA: 103] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2006] [Accepted: 04/28/2006] [Indexed: 11/28/2022]  Open
23
Shigyo M, Hasebe M, Ito M. Molecular evolution of the AP2 subfamily. Gene 2006;366:256-65. [PMID: 16388920 DOI: 10.1016/j.gene.2005.08.009] [Citation(s) in RCA: 129] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2005] [Revised: 07/01/2005] [Accepted: 08/08/2005] [Indexed: 11/24/2022]
24
Kim S, Soltis PS, Wall K, Soltis DE. Phylogeny and domain evolution in the APETALA2-like gene family. Mol Biol Evol 2005;23:107-20. [PMID: 16151182 DOI: 10.1093/molbev/msj014] [Citation(s) in RCA: 154] [Impact Index Per Article: 7.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]  Open
25
Balaji S, Babu MM, Iyer LM, Aravind L. Discovery of the principal specific transcription factors of Apicomplexa and their implication for the evolution of the AP2-integrase DNA binding domains. Nucleic Acids Res 2005;33:3994-4006. [PMID: 16040597 PMCID: PMC1178005 DOI: 10.1093/nar/gki709] [Citation(s) in RCA: 372] [Impact Index Per Article: 18.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]  Open
26
Wessler SR. Homing into the origin of the AP2 DNA binding domain. TRENDS IN PLANT SCIENCE 2005;10:54-6. [PMID: 15708341 DOI: 10.1016/j.tplants.2004.12.007] [Citation(s) in RCA: 90] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
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