Evaluating the functional, sexual and seasonal variation in the chemical constituents from feces of adult Iberian wolves (Canis lupus signatus)

Chemical signals deposited in feces play an important role in intraspecific and interspecific communication of many mammals. We collected fresh feces of adult wolves from wild breeding groups. All samples visually identified as belonging to wolves were subsequently identified to species level by sequencing a small fragment of mtDNA and sexed typing DBX6 and DBY7 sex markers. Using gas chromatography-mass spectrometry (GC-MS), we identified 56 lipophilic compounds in the feces, mainly heterocyclic aromatic organic compounds, such as indole or phenol, but also steroids, such as cholesterol, carboxylic acids and their esters between n-C₄ and n-C₁₈, aldehydes, alcohols and significant quantities of squalene and α-tocopherol, which would increase the chemical stability of feces on humid substrates. There was variability in the number and proportions of compounds between sexes, which could be indicative of their function as chemical signals. We also found variability in different reproductive states, especially in odorous compounds, steroids and α-tocopherol. Feces with a presumed marking function had higher proportions of α-tocopherol and steroids than feces with non-marking function. These compounds could be involved in intragroup and intergroup communication of wolves and their levels in feces could be directly related with the wolf's sex and physiological and reproductive status.

Assessment of the residential Finnish wolf population combines DNA captures, citizen observations and mortality data using a Bayesian state-space model

Assessment of the Finnish wolf population relies on multiple sources of information. This paper describes how Bayesian inference is used to pool the information contained in different data sets (point observations, non-invasive genetics, known mortalities) for the estimation of the number of territories occupied by family packs and pairs. The output of the assessment model is a joint probability distribution, which describes current knowledge about the number of wolves within each territory. The joint distribution can be used to derive probability distributions for the total number of wolves in all territories and for the pack status within each territory. Most of the data set comprises of both voluntary-provided point observations and DNA samples provided by volunteers and research personnel. The new method reduces the role of expert judgement in the assessment process, providing increased transparency and repeatability.

Eyes, ears, or nose? Comparison of three non-invasive methods to survey wolf recolonisation

The development and use of cost-effective and appropriate survey methods to assess species distribution and to monitor range expansion and contraction of wild populations is crucial due to the limited financial resources for conservation. Of particular importance, yet little studied, is the ability to collect information before a wild population is well established, i.e. at the early stages of recolonisation. During 2018 and 2019, we used camera traps, audio recorders, and scat detection dogs simultaneously to investigate composition, detection probability, and territorial extent of a pack of wolves in the Swiss Alps. We compared the efficacy of these survey methods by assessing sampling effort, data obtained, and costs. We show that, under the presented setup, camera traps and scat detection dogs substantially outperformed audio recorders in detecting wolves, representing the packs’ territorial extent, and revealing the number of adult wolves. The detection dogs did not detect pups but, unlike the other methods, allowed the identification of single individuals. The use of four camera traps during 13 weeks, a 24-km-long transect walked with the detection dog, or the use of one audio recorder during 148 weeks were necessary to obtain a comparable wolf detection probability. Our results show that no single method was able to return all information that we hoped to collect. Comprehensive and cost-effective information was best obtained by combining data from camera traps and detection dogs. We suggest both methods to be simultaneously used to successfully investigate wolf recolonisation into historical range.

Scent marking in wolves Canis lupus inhabiting managed lowland forests in Poland

In wolves Canis lupus, scent marking plays an important role in territory defence. In Europe, studies on patterns of scent marking in wolves have mostly been conducted in mountains or primeval forests, but since these areas are characterised by low human activity, the impact of people on this behaviour has been neglected. We conducted a study that combined genetic methods with an analysis of the spatial distribution of wolf territory markings in lowland managed forests with high human activity. We found that scent markings are deposited by all members of wolf family groups. Wolves most intensively marked crossroads and their vicinity, especially on roads only accessible for four-wheel drive cars. Our study provides further evidence that crossroads of forest roads play a crucial role in wolf scent marking. The results of our study may be useful during inventories of wolf populations based on collecting indirect signs of their presence or non-invasive genetic sampling.

Monitoring canid scent marking in space and time using a biologging and machine learning approach

For canid species, scent marking plays a critical role in territoriality, social dynamics, and reproduction. However, due in part to human dependence on vision as our primary sensory modality, research on olfactory communication is hampered by a lack of tractable methods. In this study, we leverage a powerful biologging approach, using accelerometers in concert with GPS loggers to monitor and describe scent-marking events in time and space. We performed a validation experiment with domestic dogs, monitoring them by video concurrently with the novel biologging approach. We attached an accelerometer to the pelvis of 31 dogs (19 males and 12 females), detecting raised-leg and squat posture urinations by monitoring the change in device orientation. We then deployed this technique to describe the scent marking activity of 3 guardian dogs as they defend livestock from coyote depredation in California, providing an example use-case for the technique. During validation, the algorithm correctly classified 92% of accelerometer readings. High performance was partly due to the conspicuous signatures of archetypal raised-leg postures in the accelerometer data. Accuracy did not vary with the weight, age, and sex of the dogs, resulting in a method that is broadly applicable across canid species’ morphologies. We also used models trained on each individual to detect scent marking of others to emulate the use of captive surrogates for model training. We observed no relationship between the similarity in body weight between the dog pairs and the overall accuracy of predictions, although models performed best when trained and tested on the same individual. We discuss how existing methods in the field of movement ecology can be extended to use this exciting new data type. This paper represents an important first step in opening new avenues of research by leveraging the power of modern-technologies and machine-learning to this field.

Scatting behaviour of the pygmy bluetongue lizard

We used video recordings of 29 pygmy bluetongue lizards for ten days of each month during their spring and summer activity season to observe scatting behaviour. This was possible because resident lizards rarely moved from their single entrance burrows. We used these observations to ask questions about social communication that might be relevant to conservation of this endangered species. We found lizards produced more scats in the middle of the day than earlier or later in the day, and more scats in the spring and early summer than later in the summer. Lizards moved an average of 68.54 ± 0.09 cm from their burrow entrance to deposit scats, taking an average of 2.4 min per defecation trip. They tended to use the same path direction for most defecation trips, but used more different directions if there were more close neighbours, strongly supporting a hypothesis that scats mark burrow ownership. The results suggested that conservation managers might reduce stress for relocated lizards by removing scat piles in the early stages of settlement.

The occurrence of taeniids of wolves in Liguria (northern Italy)

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Wolves are considered as definitive hosts for Echinococcus granulosus in Liguria, Italy.

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Scats were examinated and taeniid eggs isolated.

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Molecular species identification was performed through PCR analysis and sequencing.

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Taeniid species diagnosed document domestic, semi-domestic and wildlife cycles.

Canids are definitive hosts of Taenia and Echinococcus species, which infect a variety of mammals as intermediate or accidental hosts including humans. Parasite transmission is based on domestic, semi-domestic and wildlife cycles; however, little is known of the epidemiological significance of wild large definitive hosts such as the wolf. In this study, 179 scats of wolves (Canis lupus italicus) collected throughout the Italian region of Liguria were analyzed for the detection of taeniid infection. Taeniid egg isolation was performed using a sieving/flotation technique, and the species level was identified by PCR (gene target: 12S rRNA and nad 1) followed by sequence analyses. Based on sequence homologies of ≥99%, Taenia hydatigena was identified in 19.6%, Taenia krabbei in 4.5%, Taenia ovis in 2.2%, Taenia crassiceps in 0.6%, Hydatigera taeniaeformis in 0.6% and Echinococcus granulosus in 5.6% of the samples. According to these results, Canis lupus italicus can be considered as involved in the wild (including cervids and rodents) and semi-domestic cycles (including sheep and goats) of taeniids in this area.

Importance of accounting for detection heterogeneity when estimating abundance: the case of French wolves

Assessing conservation strategies requires reliable estimates of abundance. Because detecting all individuals is most often impossible in free-ranging populations, estimation procedures have to account for a <1 detection probability. Capture-recapture methods allow biologists to cope with this issue of detectability. Nevertheless, capture-recapture models for open populations are built on the assumption that all individuals share the same detection probability, although detection heterogeneity among individuals has led to underestimating abundance of closed populations. We developed multievent capture-recapture models for an open population and proposed an associated estimator of population size that both account for individual detection heterogeneity (IDH). We considered a two-class mixture model with weakly and highly detectable individuals to account for IDH. In a noninvasive capture-recapture study of wolves we based on genotypes identified in feces and hairs, we found a large underestimation of population size (27% on average) occurred when IDH was ignored.

The use of scats as social signals in a solitary, endangered scincid lizard, Tiliqua adelaidensis

Context The deliberate accumulation of faeces or scats in one location is a common behaviour used for social signalling. The endangered pygmy bluetongue lizard, Tiliqua adelaidensis, is a solitary-living species that appears to use scats as social signals. Previous studies have found that these lizards approach burrows more cautiously if there is a conspecific scat present and behave differently to scats from male and female conspecifics, indicating that these lizards can recognise scat-based conspecific cues. For endangered species, understanding how an animal uses and responds to chemical cues has the potential to become a powerful tool in conservation management. Aims To investigate whether these solitary lizards might be using scats as social signals by testing whether scats were being deposited in a non-random pattern designed to maximise their exposure to the nearest neighbour conspecifics. Method In the present study, we investigated the spatial pattern of scatting behaviour by pygmy bluetongue lizards in the field. Results Scats were consistently deposited in one direction that was significantly aligned with the nearest occupied burrow of a neighbouring lizard. The same deposition sites were used when previous scats were either destroyed by rain, or experimentally moved to a different location. Male lizards deposited scats significantly closer to their own burrows when neighbours were closer. Key conclusions The results were consistent with the lizards using scats to advertise their presence and status. The scat-deposition patterns observed in the present study suggest that scats are used as an olfactory signal associated with social organisation of pygmy bluetongue lizards. Implications Current plans for the conservation management of this endangered species include translocations. By understanding how these lizards respond to, and use chemical cues, we may be able to use this knowledge to aid in translocation programs, e.g. by pre-establishing territories for individuals before they are introduced into the population.

Relationships between sex and stress hormone levels in feces and marking behavior in a wild population of Iberian wolves (Canis lupus signatus)

Feces deposited by the breeding alpha pair on exposed substrates and/or zones may act as visual and olfactory marks associated with social dominance in wolves. The aim of this study was to determine if there was a correlation between marking behavior, sex hormone levels, and physiological stress in a wild population of Iberian wolves in Northwest Spain. The glucocorticoid and sex hormone levels were measured in feces collected as a function of exposure (conspicuous/inconspicuous), height (above ground level/at ground level), and strategic location in the habitat (at crossroads/off crossroads), as well as the frequency of re-marking. The feces, believed to serve as marking cues, had higher glucocorticoid levels (cortisol) and sex hormones (testosterone, progesterone, and estradiol). The results suggest that in Iberian wolves, the alpha pair is subject to higher social stress than subordinate individuals, and that the reproductive suppression of subordinates is not mediated by chronic glucocorticoid elevation.

Social aggregation by thick-tailed geckos (Nephrurus milii, Gekkonidae): does scat piling play a role?

Communal deposition of faeces into scat piles plays a role in pheromonal communication among group members in many ‘social’ vertebrates, including the scincid lizard Egernia stokesii. How general is this apparent link between scat piling and sociality? Thick-tailed geckos (Nephrurus milii, Gekkonidae) are large nocturnally active lizards that are widely distributed across southern Australia. They spend the daylight hours inactive inside retreat sites, typically rock crevices or burrows. Unusually among geckos, these animals often form groups of several individuals at these times. Our observations of captive N. milii showed that they also form discrete scat piles. However, habitat-selection experiments suggested that adding scats to a crevice did not modify the lizards’ probability of using that crevice. Thus, although Nephrurus milii scat pile (at least in captivity), communal faeces deposits do not appear to serve a social role in this taxon.

The importance of crossroads in faecal marking behaviour of the wolves (Canis lupus)

For wolves (Canis lupus) scats play an important function in territorial marking behaviour. Depositing scats at strategic sites such as crossroads and on conspicuous substrates probably increases their effectiveness as visual and olfactory marks. It is therefore likely that scats will be deposited, and will accumulate, at particular crossroads where the probability of being detected by other wolves is greatest. To check this hypothesis, a wolf population in NW Spain was studied for two consecutive years, from May 1998 to March 2000, and the spatial distribution of 311 scats detected along roads (both at and away from crossroads) was analysed. This study was conducted over an area of 12,000 ha in Montes do Invernadeiro Natural Park. The results confirm that wolves preferably deposit their scats at crossroads (60.1%) and on conspicuous substrates (72.1%). Significantly more scats were found at intersections with numerous, easily passable roads connecting distant territories. Thus, wolves preferably deposit their faeces at crossroads with high accessibility and driveability. The larger the surface area of the crossroads, the more scats were found. Crossroads are therefore highly strategic points that facilitate the detection of scats.

Using faecal DNA sampling and GIS to monitor hybridization between red wolves (Canis rufus) and coyotes (Canis latrans)

The US Fish and Wildlife Service's (USFWS) Red Wolf Recovery Program recognizes hybridization with coyotes as the primary threat to red wolf recovery. Efforts to curb or stop hybridization are hampered in two ways. First, hybrid individuals are difficult to identify based solely on morphology. Second, managers need to effectively search 6000 km(2) for the presence of coyotes and hybrids. We develop a noninvasive method to screen large geographical areas for coyotes and hybrids with maternal coyote ancestry by combining mitochondrial DNA sequence analysis of faeces (scat) and geographic information system (GIS) technology. This method was implemented on the Alligator River National Wildlife Refuge (1000 km(2)) in northeastern North Carolina. A total of 956 scats were collected in the spring of 2000 and 2001 and global positioning system (GPS) coordinates were recorded. Seventy-five percent of the scats were assigned to species and five coyote/hybrid scats were detected. Placement of scat location coordinates on a map of the experimental population area revealed that four of the coyote/hybrid scats were detected within the home ranges of sterilized hybrids. The other coyote/hybrid scat indicated the presence of a previously unknown individual. We suggest this method be expanded to include more of the experimental population area and be optimized for use with nuclear markers to improve detection of hybrid and back-crossed individuals.

Faecal genetic analysis to determine the presence and distribution of elusive carnivores: design and feasibility for the Iberian lynx

Noninvasive methods using genetic markers have been suggested as ways to overcome difficulties associated with documenting the presence of elusive species. We present and assess a novel, reliable and effective molecular genetic technique for the unequivocal genetic identification of faeces from the endangered Iberian lynx (Lynx pardinus). From mitochondrial DNA (mtDNA) cytochrome b and D-loop region sequences, we designed four species-specific primers (for products 130-161 bp long) that were considered to be likely to amplify degraded DNA. We compared two DNA extraction methods, various DNA amplification conditions and the robustness and specificity of the primer pairs with 87 lynx samples from 5 potentially different lynx populations and with 328 samples of other carnivore species. The utility of the identification technique was tested with faeces of different ages, with faeces from controlled field experiments, and with faeces collected from locales with possible lynx populations from throughout the state of Andalusia, Spain (8052 km2). Faecal mtDNA extraction was more efficient using PBS wash of the faeces instead of a faeces homogenate. Our assay increased from 92.6 to 99% efficiency with a second amplification and a reduction in template concentration to overcome polymerase chain reaction (PCR) inhibition. Our assay never produced false positives, and correctly identified all lynx faeces. Of 252 faeces samples of unknown species collected throughout Andalusia, 26.6% (from three different areas) were classified as Iberian lynx, 1.4% showed evidence of PCR inhibition and 1.2% were of uncertain origin. This method has proven to be a reliable technique that can be incorporated into large-scale surveys of Iberian lynx populations and exemplifies an approach that can easily be extended to other species.

Noninvasive molecular tracking of colonizing wolf (Canis lupus) packs in the western Italian Alps

We used noninvasive methods to obtain genetic and demographic data on the wolf packs (Canis lupus), which are now recolonizing the Alps, a century after their eradication. DNA samples, extracted from presumed wolf scats collected in the western Italian Alps (Piemonte), were genotyped to determine species and sex by sequencing parts of the mitochondrial DNA (mtDNA) control-region and ZFX/ZFY genes. Individual genotypes were identified by multilocus microsatellite analyses using a multiple tubes polymerase chain reaction (PCR). The performance of the laboratory protocols was affected by the age of samples. The quality of excremental DNA extracts was higher in samples freshly collected on snow in winter than in samples that were older or collected during summer. Preliminary mtDNA screening of all samples allowed species identification and was a good predictor of further PCR performances. Wolf, and not prey, DNA targets were preferentially amplified. Allelic dropout occurred more frequently than false alleles, but the probability of false homozygote determinations was always < 0.001. A panel of six to nine microsatellites would allow identification of individual wolf genotypes, also whether related, with a probability of identity of < 0.015. Genealogical relationships among individuals could be determined reliably if the number of candidate parents was 6-8, and most of them had been sampled and correctly genotyped. Genetic data indicate that colonizing Alpine wolves originate exclusively from the Italian source population and retain a high proportion of its genetic diversity. Spatial and temporal locations of individual genotypes, and kinship analyses, suggest that two distinct packs of closely related wolves, plus some unrelated individuals, ranged in the study areas. This is in agreement with field observations.