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For: Mehrabi R, Mirzadi Gohari A, Kema GHJ. Karyotype Variability in Plant-Pathogenic Fungi. Annu Rev Phytopathol 2017;55:483-503. [PMID: 28777924 DOI: 10.1146/annurev-phyto-080615-095928] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
Number Cited by Other Article(s)
1
Zaccaron AZ, Stergiopoulos I. The dynamics of fungal genome organization and its impact on host adaptation and antifungal resistance. J Genet Genomics 2025;52:628-640. [PMID: 39522682 DOI: 10.1016/j.jgg.2024.10.010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Revised: 10/15/2024] [Accepted: 10/21/2024] [Indexed: 11/16/2024]
2
Luo J, Bian J, Murillo M, Hau PT, Feng Y, Chau ECT, Yan Y, Ng LC, Parsha ASK, Siu GKH, Chow FWN, Xiong Q. High-quality genome assembly and comparative analysis reveal extensive genomic variation in Talaromyces marneffei. Microb Genom 2025;11:001400. [PMID: 40294122 PMCID: PMC12037069 DOI: 10.1099/mgen.0.001400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/18/2024] [Accepted: 03/21/2025] [Indexed: 04/30/2025]  Open
3
Fagundes WC, Huang YS, Häußler S, Langner T. From Lesions to Lessons: Two Decades of Filamentous Plant Pathogen Genomics. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2025;38:187-205. [PMID: 39813026 DOI: 10.1094/mpmi-09-24-0115-fi] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/16/2025]
4
Dvorak E, Mazet ID, Couture C, Delmotte F, Foulongne-Oriol M. Recombination landscape and karyotypic variations revealed by linkage mapping in the grapevine downy mildew pathogen Plasmopara viticola. G3 (BETHESDA, MD.) 2025;15:jkae259. [PMID: 39613312 PMCID: PMC11979753 DOI: 10.1093/g3journal/jkae259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/08/2024] [Accepted: 10/11/2024] [Indexed: 12/01/2024]
5
Sigova EA, Dvorianinova EM, Rozhmina TA, Kudryavtseva LP, Zhernova DA, Kaplun AM, Pavlova VA, Bodrov YV, Arkhipov AA, Borkhert EV, Pushkova EN, Melnikova NV, Dmitriev AA. Complete Annotated Genome Assembly of Flax Pathogen Colletotrichum lini. J Fungi (Basel) 2024;10:605. [PMID: 39330365 PMCID: PMC11432806 DOI: 10.3390/jof10090605] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2024] [Revised: 08/23/2024] [Accepted: 08/23/2024] [Indexed: 09/28/2024]  Open
6
Dhakal U, Kim HS, Toomajian C. The landscape and predicted roles of structural variants in Fusarium graminearum genomes. G3 (BETHESDA, MD.) 2024;14:jkae065. [PMID: 38546739 DOI: 10.1093/g3journal/jkae065] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Accepted: 02/22/2024] [Indexed: 06/06/2024]
7
Coelho MA, David-Palma M, Shea T, Bowers K, McGinley-Smith S, Mohammad AW, Gnirke A, Yurkov AM, Nowrousian M, Sun S, Cuomo CA, Heitman J. Comparative genomics of the closely related fungal genera Cryptococcus and Kwoniella reveals karyotype dynamics and suggests evolutionary mechanisms of pathogenesis. PLoS Biol 2024;22:e3002682. [PMID: 38843310 PMCID: PMC11185503 DOI: 10.1371/journal.pbio.3002682] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2024] [Revised: 06/18/2024] [Accepted: 05/17/2024] [Indexed: 06/19/2024]  Open
8
Habig M, Grasse AV, Müller J, Stukenbrock EH, Leitner H, Cremer S. Frequent horizontal chromosome transfer between asexual fungal insect pathogens. Proc Natl Acad Sci U S A 2024;121:e2316284121. [PMID: 38442176 PMCID: PMC10945790 DOI: 10.1073/pnas.2316284121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2023] [Accepted: 01/24/2024] [Indexed: 03/07/2024]  Open
9
Narayanan A, Reza MH, Sanyal K. Behind the scenes: Centromere-driven genomic innovations in fungal pathogens. PLoS Pathog 2024;20:e1012080. [PMID: 38547101 PMCID: PMC10977804 DOI: 10.1371/journal.ppat.1012080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/02/2024]  Open
10
Coelho MA, David-Palma M, Shea T, Bowers K, McGinley-Smith S, Mohammad AW, Gnirke A, Yurkov AM, Nowrousian M, Sun S, Cuomo CA, Heitman J. Comparative genomics of Cryptococcus and Kwoniella reveals pathogenesis evolution and contrasting karyotype dynamics via intercentromeric recombination or chromosome fusion. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.12.27.573464. [PMID: 38234769 PMCID: PMC10793447 DOI: 10.1101/2023.12.27.573464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
11
Li C, Qiao L, Lu Y, Xing G, Wang X, Zhang G, Qian H, Shen Y, Zhang Y, Yao W, Cheng K, Ma Z, Liu N, Wang D, Zheng W. Gapless Genome Assembly of Puccinia triticina Provides Insights into Chromosome Evolution in Pucciniales. Microbiol Spectr 2023;11:e0282822. [PMID: 36688678 PMCID: PMC9927501 DOI: 10.1128/spectrum.02828-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 12/02/2022] [Indexed: 01/24/2023]  Open
12
Rajpal VR, Sharma S, Sehgal D, Sharma P, Wadhwa N, Dhakate P, Chandra A, Thakur RK, Deb S, Rama Rao S, Mir BA, Raina SN. Comprehending the dynamism of B chromosomes in their journey towards becoming unselfish. Front Cell Dev Biol 2023;10:1072716. [PMID: 36684438 PMCID: PMC9846793 DOI: 10.3389/fcell.2022.1072716] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2022] [Accepted: 12/13/2022] [Indexed: 01/06/2023]  Open
13
Naranjo-Ortiz MA, Molina M, Fuentes D, Mixão V, Gabaldón T. Karyon: a computational framework for the diagnosis of hybrids, aneuploids, and other nonstandard architectures in genome assemblies. Gigascience 2022;11:giac088. [PMID: 36205401 PMCID: PMC9540331 DOI: 10.1093/gigascience/giac088] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/22/2021] [Revised: 11/23/2021] [Accepted: 08/24/2022] [Indexed: 12/22/2022]  Open
14
Montezano Fernandes F, Vieira de Queiroz M, Lopes da Silva L, Maria Queiroz Azevedo D, Luis Badel J, Couto Alfenas A. Chromosomal polymorphism of the Ceratocystis fimbriata species complex in Brazil. Fungal Genet Biol 2022;162:103728. [PMID: 35932991 DOI: 10.1016/j.fgb.2022.103728] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2021] [Revised: 07/15/2022] [Accepted: 07/23/2022] [Indexed: 11/04/2022]
15
Komluski J, Stukenbrock EH, Habig M. Non-Mendelian transmission of accessory chromosomes in fungi. Chromosome Res 2022;30:241-253. [PMID: 35881207 PMCID: PMC9508043 DOI: 10.1007/s10577-022-09691-8] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2021] [Revised: 03/15/2022] [Accepted: 04/11/2022] [Indexed: 11/27/2022]
16
Noar RD, Thomas E, Daub ME. Genetic Characteristics and Metabolic Interactions between Pseudocercospora fijiensis and Banana: Progress toward Controlling Black Sigatoka. PLANTS (BASEL, SWITZERLAND) 2022;11:948. [PMID: 35406928 PMCID: PMC9002641 DOI: 10.3390/plants11070948] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/25/2022] [Revised: 03/23/2022] [Accepted: 03/25/2022] [Indexed: 05/10/2023]
17
Kema GHJ, Drenth A, Dita M, Jansen K, Vellema S, Stoorvogel JJ. Editorial: Fusarium Wilt of Banana, a Recurring Threat to Global Banana Production. FRONTIERS IN PLANT SCIENCE 2021;11:628888. [PMID: 33505419 PMCID: PMC7829247 DOI: 10.3389/fpls.2020.628888] [Citation(s) in RCA: 20] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/13/2020] [Accepted: 12/11/2020] [Indexed: 05/28/2023]
18
Engel T, Verweij PE, van den Heuvel J, Wangmo D, Zhang J, Debets AJM, Snelders E. Parasexual recombination enables Aspergillus fumigatus to persist in cystic fibrosis. ERJ Open Res 2020;6:00020-2020. [PMID: 33313304 PMCID: PMC7720686 DOI: 10.1183/23120541.00020-2020] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/13/2020] [Accepted: 09/15/2020] [Indexed: 01/13/2023]  Open
19
Dobbs JT, Kim MS, Dudley NS, Klopfenstein NB, Yeh A, Hauff RD, Jones TC, Dumroese RK, Cannon PG, Stewart JE. Whole genome analysis of the koa wilt pathogen (Fusarium oxysporum f. sp. koae) and the development of molecular tools for early detection and monitoring. BMC Genomics 2020;21:764. [PMID: 33148175 PMCID: PMC7640661 DOI: 10.1186/s12864-020-07156-y] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2020] [Accepted: 10/15/2020] [Indexed: 12/20/2022]  Open
20
Naranjo‐Ortiz MA, Gabaldón T. Fungal evolution: cellular, genomic and metabolic complexity. Biol Rev Camb Philos Soc 2020;95:1198-1232. [PMID: 32301582 PMCID: PMC7539958 DOI: 10.1111/brv.12605] [Citation(s) in RCA: 75] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Revised: 03/31/2020] [Accepted: 04/02/2020] [Indexed: 12/13/2022]
21
Mahmoudjanlou Y, Dahlmann TA, Kück U. Molecular analysis of mating type loci from the mycophenolic acid producer Penicillium brevicompactum: Phylogeny and MAT protein characterization suggest a cryptic sexual life cycle. Fungal Biol 2020;124:821-833. [PMID: 32883432 DOI: 10.1016/j.funbio.2020.07.006] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2020] [Revised: 06/25/2020] [Accepted: 07/07/2020] [Indexed: 12/31/2022]
22
Feurtey A, Lorrain C, Croll D, Eschenbrenner C, Freitag M, Habig M, Haueisen J, Möller M, Schotanus K, Stukenbrock EH. Genome compartmentalization predates species divergence in the plant pathogen genus Zymoseptoria. BMC Genomics 2020;21:588. [PMID: 32842972 PMCID: PMC7448473 DOI: 10.1186/s12864-020-06871-w] [Citation(s) in RCA: 22] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/13/2019] [Accepted: 06/26/2020] [Indexed: 11/25/2022]  Open
23
Priest SJ, Yadav V, Heitman J. Advances in understanding the evolution of fungal genome architecture. F1000Res 2020;9:F1000 Faculty Rev-776. [PMID: 32765832 PMCID: PMC7385547 DOI: 10.12688/f1000research.25424.1] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 07/13/2020] [Indexed: 12/15/2022]  Open
24
Covo S. Genomic Instability in Fungal Plant Pathogens. Genes (Basel) 2020;11:E421. [PMID: 32295266 PMCID: PMC7230313 DOI: 10.3390/genes11040421] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2020] [Revised: 03/29/2020] [Accepted: 04/10/2020] [Indexed: 02/07/2023]  Open
25
Demin SY, Berdieva MA, Podlipaeva YI, Goodkov AV. Karyotypic instability of endoprophase and mitotic cells of Amoeba sp. strain Cont from the "proteus-type" group (Amoebozoa, Euamoebida, Amoebidae). Eur J Protistol 2020;74:125691. [PMID: 32200034 DOI: 10.1016/j.ejop.2020.125691] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 02/21/2020] [Accepted: 03/03/2020] [Indexed: 01/01/2023]
26
The architecture of the Plasmodiophora brassicae nuclear and mitochondrial genomes. Sci Rep 2019;9:15753. [PMID: 31673019 PMCID: PMC6823432 DOI: 10.1038/s41598-019-52274-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2019] [Accepted: 10/15/2019] [Indexed: 11/09/2022]  Open
27
Drenth A, McTaggart AR, Wingfield BD. Fungal clones win the battle, but recombination wins the war. IMA Fungus 2019;10:18. [PMID: 32647622 PMCID: PMC7325676 DOI: 10.1186/s43008-019-0020-8] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2019] [Accepted: 09/27/2019] [Indexed: 02/07/2023]  Open
28
Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, Tang H, Farman M, Cook D, White FF, Valent B, Liu S. Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus. PLoS Genet 2019;15:e1008272. [PMID: 31513573 PMCID: PMC6741851 DOI: 10.1371/journal.pgen.1008272] [Citation(s) in RCA: 75] [Impact Index Per Article: 12.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 06/24/2019] [Indexed: 11/28/2022]  Open
29
Peng Z, Oliveira-Garcia E, Lin G, Hu Y, Dalby M, Migeon P, Tang H, Farman M, Cook D, White FF, Valent B, Liu S. Effector gene reshuffling involves dispensable mini-chromosomes in the wheat blast fungus. PLoS Genet 2019;15:e1008272. [PMID: 31513573 DOI: 10.1101/359455] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2019] [Accepted: 06/24/2019] [Indexed: 05/26/2023]  Open
30
Naranjo‐Ortiz MA, Gabaldón T. Fungal evolution: major ecological adaptations and evolutionary transitions. Biol Rev Camb Philos Soc 2019;94:1443-1476. [PMID: 31021528 PMCID: PMC6850671 DOI: 10.1111/brv.12510] [Citation(s) in RCA: 150] [Impact Index Per Article: 25.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2018] [Revised: 03/10/2019] [Accepted: 03/13/2019] [Indexed: 12/13/2022]
31
Zheng H, Zhong Z, Shi M, Zhang L, Lin L, Hong Y, Fang T, Zhu Y, Guo J, Zhang L, Fang J, Lin H, Norvienyeku J, Chen X, Lu G, Hu H, Wang Z. Comparative genomic analysis revealed rapid differentiation in the pathogenicity-related gene repertoires between Pyricularia oryzae and Pyricularia penniseti isolated from a Pennisetum grass. BMC Genomics 2018;19:927. [PMID: 30545292 PMCID: PMC6293661 DOI: 10.1186/s12864-018-5222-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/17/2018] [Accepted: 11/05/2018] [Indexed: 01/06/2023]  Open
32
Waalwijk C, Taga M, Zheng SL, Proctor RH, Vaughan MM, O'Donnell K. Karyotype evolution in Fusarium. IMA Fungus 2018;9:13-26. [PMID: 30018869 PMCID: PMC6048573 DOI: 10.5598/imafungus.2018.09.01.02] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2018] [Accepted: 02/14/2018] [Indexed: 12/18/2022]  Open
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