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Tang HY, Tang XF, Zuo XB, Gao JP, Sheng YJ, Li Y, Zhou FS, Yin XY, Xiao FL, Du WD, Yang S, Sun LD, Zhang XJ. Association analysis of single nucleotide polymorphisms at five loci: comparison between atopic dermatitis and asthma in the Chinese Han population. PLoS One 2012; 7:e35334. [PMID: 22545103 PMCID: PMC3335873 DOI: 10.1371/journal.pone.0035334] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2011] [Accepted: 03/14/2012] [Indexed: 11/18/2022] Open
Abstract
Atopic diseases, such as atopic dermatitis (AD) and asthma, are closely related to clinical phenotypes with hypersensitivity, and often share some similar genetic and pathogenic bases. Our recent GWAS identified three susceptibility gene/loci FLG (rs11204971 and rs3126085), 5q22.1 (rs10067777, rs7701890, rs13360927 and rs13361382) and 20q13.33 (rs6010620) to AD. The effect of these AD associated polymorphisms in asthma is so far unknown. To investigate whether AD relevant genetic variants is identical to asthma and reveal the differences in genetic factors between AD and asthma in Chinese Han population, seven AD associated single nucleotide polymorphisms (SNPs) as well as 3 other SNPs (rs7936562 and rs7124842 at 11q13.5 and rs4982958 at 14q11.2) from our previous AD GWAS were genotyped in 463 asthma patients and 985 controls using Sequenom MassArray system. We found rs4982958 at 14q11.2 was significantly associated with asthma (P = 3.04×10−4, OR = 0.73). We also detected one significant risk haplotype GGGA from the 4 SNPs (rs10067777, rs7701890, rs13360927 and rs13361382) at 5q22.1 in AD cases (Pcorrection = 3.60×10−10, OR = 1.26), and the haplotype was suggestive of risk in asthma cases in this study (P = 0.014, Pcorrection = 0.084, OR = 1.38). These SNPs (rs11204971, rs3126085, rs7936562, rs712484 and rs6010620) at AD susceptibility genes/loci FLG, 11q13.5 and 20q13.33 were not associated with asthma in this study. Our results further comfirmed that 14q11.2 was an important candidate locus for asthma and demonstrated that 5q22.1 might be shared by AD and asthma in Chinese Han population.
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Affiliation(s)
- Hua-Yang Tang
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Xian-Fa Tang
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Xian-Bo Zuo
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Jin-Ping Gao
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Yu-Jun Sheng
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Yang Li
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Fu-Sheng Zhou
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Xian-Yong Yin
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Feng-Li Xiao
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Wei-Dong Du
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Sen Yang
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
| | - Liang-Dan Sun
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
- * E-mail: (LDS); (XJZ)
| | - Xue-Jun Zhang
- Institute of Dermatology and Department of Dermatology, No.1 Hospital, Anhui Medical University, Hefei, Anhui, China
- Key Laboratory of Dermatology, Anhui Medical University, Ministry of Education, China, Hefei, Anhui, China
- State Key Laboratory Incubation Base of Dermatology, Anhui Medical University, Hefei, Anhui, China
- * E-mail: (LDS); (XJZ)
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Sharma S, Rajan UM, Kumar A, Soni A, Ghosh B. A novel (TG)n(GA)m repeat polymorphism 254 bp downstream of the mast cell chymase (CMA1) gene is associated with atopic asthma and total serum IgE levels. J Hum Genet 2005; 50:276-282. [PMID: 15924217 DOI: 10.1007/s10038-005-0252-x] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2005] [Accepted: 03/23/2005] [Indexed: 12/25/2022]
Abstract
The gene for mast cell chymase (CMA1) is an ideal candidate for investigating genetic predisposition to atopic asthma, as it is an important mediator of inflammation and remodeling in the asthmatic lung. Various studies have examined the association between -1903 G/A polymorphism and allergic phenotypes, but inconsistent results have been obtained. We investigated the association of this SNP and a novel (TG)(n)(GA)(m) repeat polymorphism (accession no. BV210164) 254 bp downstream of the gene with asthma and its associated traits in a case-control study in two independent cohorts recruited from the Indian population. A significant association was observed for the (TG)(n)(GA)(m) repeat with asthma (p<0.05) in both the cohorts. Although no association was observed for the -1903 G/A SNP with asthma, a significant association was observed between the genotypes and serum IgE levels (p=0.003 and 0.0004 for cohort A and B). When haplotypes were compared between patients and controls, the haplotype G_43 was found at higher frequency in controls (p=0.05). Also, on comparing major haplotypes (>5%) with respect to log total serum IgE levels, a significant difference was obtained (p=0.018 and p=0.046 for cohorts A and B). These results suggest that the CMA1 gene contributes to asthma susceptibility and may be involved in regulating IgE levels in atopic asthma.
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Affiliation(s)
- Shilpy Sharma
- Molecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India
| | - U Mabali Rajan
- Molecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India
| | - Amrendra Kumar
- Molecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India
| | - Abha Soni
- Molecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India
| | - Balaram Ghosh
- Molecular Immunogenetics laboratory, Institute of Genomics and Integrative Biology, Mall Road, Delhi, 110007, India.
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