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For: Castro CJ, Marine RL, Ramos E, Ng TFF. The effect of variant interference on de novo assembly for viral deep sequencing. BMC Genomics 2020;21:421. [PMID: 32571214 PMCID: PMC7306937 DOI: 10.1186/s12864-020-06801-w] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2020] [Accepted: 06/02/2020] [Indexed: 12/21/2022]  Open
Number Cited by Other Article(s)
1
Álvarez-Narváez S, Harrell TL, Nour I, Mohanty SK, Conrad SJ. Choosing the most suitable NGS technology to combine with a standardized viral enrichment protocol for obtaining complete avian orthoreovirus genomes from metagenomic samples. FRONTIERS IN BIOINFORMATICS 2025;5:1498921. [PMID: 39967836 PMCID: PMC11833334 DOI: 10.3389/fbinf.2025.1498921] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2024] [Accepted: 01/13/2025] [Indexed: 02/20/2025]  Open
2
Ortigas-Vasquez A, Szpara M. Embracing Complexity: What Novel Sequencing Methods Are Teaching Us About Herpesvirus Genomic Diversity. Annu Rev Virol 2024;11:67-87. [PMID: 38848592 DOI: 10.1146/annurev-virology-100422-010336] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/09/2024]
3
Gu X, Yang Y, Mao F, Lee WL, Armas F, You F, Needham DM, Ng C, Chen H, Chandra F, Gin KY. A comparative study of flow cytometry-sorted communities and shotgun viral metagenomics in a Singapore municipal wastewater treatment plant. IMETA 2022;1:e39. [PMID: 38868719 PMCID: PMC10989988 DOI: 10.1002/imt2.39] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/20/2022] [Revised: 04/30/2022] [Accepted: 06/19/2022] [Indexed: 06/14/2024]
4
VPipe: an Automated Bioinformatics Platform for Assembly and Management of Viral Next-Generation Sequencing Data. Microbiol Spectr 2022;10:e0256421. [PMID: 35234489 PMCID: PMC8941893 DOI: 10.1128/spectrum.02564-21] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
5
Pechlivanis N, Togkousidis A, Tsagiopoulou M, Sgardelis S, Kappas I, Psomopoulos F. A Computational Framework for Pattern Detection on Unaligned Sequences: An Application on SARS-CoV-2 Data. Front Genet 2021;12:618170. [PMID: 34122498 PMCID: PMC8194296 DOI: 10.3389/fgene.2021.618170] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 05/04/2021] [Indexed: 11/13/2022]  Open
6
López-Leal G, Reyes-Muñoz A, Santamaria RI, Cevallos MA, Pérez-Monter C, Castillo-Ramírez S. A novel vieuvirus from multidrug-resistant Acinetobacter baumannii. Arch Virol 2021;166:1401-1408. [PMID: 33635432 DOI: 10.1007/s00705-021-05010-4] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/05/2020] [Accepted: 02/16/2021] [Indexed: 11/26/2022]
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