Fragmentation of Chilean Andean rivers: expected effects of hydropower development

Species tree analyses and speciation-based species delimitation support new species in the relict catfish family Diplomystidae and provide insights on recent glacial history in Patagonia

Diplomystidae is an early-diverged family of freshwater catfish endemic to southern South America. We have recently collected five juvenile specimens belonging to this family from the Bueno River Basin, a basin which the only previous record was a single juvenile specimen collected in 1996. This finding confirms the distribution of the family further South in northern Patagonia, but poses new questions about the origin of this population in an area with a strong glacial history. We used phylogenetic analyses to evaluate three different hypotheses that could explain the origin of this population in the basin. First, the population could have originated in Atlantic basins (East of the Andes) and dispersed to the Bueno Basin after the Last Glacial Maximum (LGM) via river reversals, as it has been proposed for other population of Diplomystes as well as for other freshwater species from Patagonia. Second, the population could have originated in the geographically close Valdivia Basin (West of the Andes) and dispersed south to its current location in the Bueno Basin. Third, regardless of its geographic origin (West or East of the Andes), the Bueno Basin population could have a longer history in the basin, surviving in situ through the LGM. In addition, we conducted species delimitation analyses using a recently developed method that uses a protracted model of speciation. Our goal was to test the species status of the Bueno Basin population along with another controversial population in Central Chile (Biobío Basin), which appeared highly divergent in previous studies with mtDNA. The phylogenetic analyses showed that the population from the Bueno Basin is more related to Atlantic than to Pacific lineages, although with a deep divergence that predated the LGM, supporting in situ survival rather than postglacial dispersal. In addition, these analyses also showed that the species D. nahuelbutaensis is polyphyletic, supporting the need for a taxonomic reevaluation. The species delimitation analyses supported two new species which are described using molecular diagnostic characters: Diplomystes arratiae sp. nov. from the Biobío, Carampangue, and Laraquete basins, maintaining D. nahuelbutaensis valid only for the Imperial Basin, and Diplomystes habitae sp. nov. from the Bueno Basin. This study greatly increases the number of species within both the family Diplomystidae and Patagonia, and contributes substantially to the knowledge of the evolution of southern South American freshwater biodiversity during its glacial history. Given the important contribution to the phylogenetic diversity of the family, we recommend a high conservation priority for both new species. Finally, this study highlights an exemplary scenario where species descriptions based only on DNA data are particularly valuable, bringing additional elements to the ongoing debate on DNA-based taxonomy.

Fragmentation Level Drives Local Fish Assemblage Diversity Patterns in Fragmented River Basins

Longitudinal connectivity is the main attribute of river ecosystems and is essential for the maintenance of aquatic biota. When longitudinal connectivity decreases in a river network, abundance of some fish species decreases, and local extinctions may occur. Such abundance decreases and extinctions affect local assemblage structure (alpha diversity) and result in a high degree of dissimilarity among local assemblages (higher beta diversity). Specific ecological mechanisms that are behind these biodiversity changes induced by connectivity loss remain poorly understood. Here, we assessed the effects of fragmentation at the local and basin level, as well as local environmental variables on local fish diversity patterns in eight Andean river basins in central Chile (32–39° S). The results indicated that fish assemblages inhabiting pool habitats in highly fragmented basins were characterized by significantly lower species richness and alpha diversity mainly driven by absence of fish species with high dispersion capacities. Our results highlight the importance of the effects of barrier cascades upstream as drivers of local native fish diversity. Sustainable hydropower development necessitates system scale planning of the placement of future barriers and should consider both local and basin scale biodiversity indicators.

Rivers as a potential dispersing agent of the invasive tree Acacia dealbata

Background

The silver wattle Acacia dealbata is a fast-growing tree from Australia that has become naturalised in different regions of the world, attaining invasive status in most of them. In Chile, A. dealbata reaches large abundances along banks and floodplains of invaded fluvial systems, suggesting that rivers may act as a vector for seed dispersal. As hydrochory has not been documented previously in this species, the aim of this study is to evaluate the potential for water dispersal of seeds of this invasive tree along rivers.

Methods

Seed samples from rivers were collected at three sites along two A. dealbata-invaded rivers within the Cachapoal basin, central Chile. Number of seeds collected was contrasted versus hydraulic and local conditions with RDA. Seed buoyancy and sedimentation velocity were determined and compared between sites with an ANCOVA. Finally, the probability of seed germination after long periods of immersion in water was assessed, simulating transport conditions in the flow. Germination results were tested with a GLM.

Results

Results indicate that increasing abundance of A. dealbata seeds in the flow is related to the level of turbulence of the flow. Seeds display high floatability but their sedimentation velocity is high when they do sink. Finally, silver wattle seeds can germinate after long periods (many weeks) of immersion in water; however, their probability of germination depends to a large extent on whether seeds are scarified or not.

Conclusions

Based on the evidence collected, we suggest that the seeds of A. dealbata have the necessary traits to be dispersed by rivers, this being the first research testing this hypothesis. The success of hydrochory of A. dealbata would depend on river flow turbulence, and whether there are natural mechanisms for scarifying the seeds either before or during transport. The proposed methodology can be used to assess river hydrochory for any tree species.

Effects on Fluvial Geomorphology and Vegetation Cover following Hydroelectric Power Plant Operation: A Case Study in the Maule River (Chile)

The installation of hydroelectric plants has generated multiple environmental impacts on the world’s river systems. In central Chile, the impacts of hydroelectric reservoir operation have been documented in ecological and hydrologic regime terms. This investigation assesses the changes in channel morphology, vegetation distribution, and flows in the middle section of the Maule River during the period following the start-up of a hydroelectric plant. Changes in fluvial morphology (active area) and land cover are quantified using LANDSAT images, contrasted with a vegetation sampling and flow analysis. The results show a 12% decrease in active areas of the river, indicating a loss of geomorphological diversity. Within the active channel, there was a gradual increase in plant-covered surface area, which reached 159% between 1989 and 2018, mainly due to reductions in water (−61%), active bar (−35%), and bare soil surface areas (−29%). The changes were evident ten years after plant operations began and intensified during the period known as the megadrought in central Chile (2008–2018). The flow magnitudes present a decrease for exceedance probabilities (P) below 85% in the period after 1985, with a slight increase recorded for low flows (P > 85%). In the segments with superior stabilization, invasive species such as Acacia dealbata (silver wattle) predominated, which are specialists at taking advantage of disturbances to settle and stabilize active areas, narrowing the possibilities for morphological change.

Taxonomic and Functional Responses of Species-Poor Riverine Fish Assemblages to the Interplay of Human-Induced Stressors

The effects of human-induced stressors on riverine fish assemblages are still poorly understood, especially in species-poor assemblages such as those of temperate South American rivers. In this study we evaluated the effects of human-induced stressors on the taxonomic and functional facets of fish assemblages of two central-southern Chilean rivers: the Biobío River (flow regulated by multiple dams) and the Valdivia River (free-flowing). The study design considered reference condition, urban polluted, and urban-industrial polluted sites. To evaluate the effects of stressors on fish assemblages we assessed: (i) components of beta diversity; (ii) spatial and temporal patterns of fish structure using a multivariate approach; and (iii) functional diversity (specialization, originality, dispersion, and entropy) using linear models. We found a strong association between taxonomic and functional fish assemblage facets with a predominance of natural processes in the Valdivia River reflected in marked temporal dynamics. In contrast, the Biobío River showed a clear loss of association with seasonal pattern, and both taxonomic and functional facets appeared to respond significantly to pollution zones. Implementation of stricter environmental policies and integrated river basin management are instrumental for conserving species-poor fish assemblages in Chilean temperate rivers characterized by low functional traits redundancy.

Interplay of geomorphology and hydrology drives macroinvertebrate assemblage responses to hydropeaking

Hydropeaking leads to major anthropogenic disturbance of river networks worldwide. Flow variations imposed by hydropeaking may significantly affect macroinvertebrate assemblages within the river network. As such, the responses of macroinvertebrate assemblages to hydropeaking are expected to be complex and vary across spatial and temporal scales as well as ecological organization levels. To unpack this complexity, we assessed the interplay of geomorphic and hydrological variables as drivers of the responses of macroinvertebrate assemblages to hydropeaking. Specifically, we studied different levels of ecological organization of macroinvertebrate assemblages in two functional process zones (FPZs; Sub-Andean and Central Valley Gravel Dominated) subjected to different flow management in two Chilean Andean river networks. Hydropeaking caused significant reduction of macroinvertebrate abundances in both FPZs and at all ecological organization levels with the exception of one feeding guild (scrapers). Furthermore, the response of macroinvertebrate assemblage variance was stronger in the Central Valley Gravel Dominated FPZ. Both geomorphic and hydrological variables influenced macroinvertebrate assemblage responses. However, the effects of the principal geomorphic variables operated at valley (meso) spatial scale and the main hydrological variables operated at the sub-daily (micro) temporal scale. Therefore, to minimise the effects of hydropeaking on macroinvertebrate assemblages, flow management should consider reduction of sub-daily variability. Furthermore, placement of new barriers should take into account not only their position within the river network but also their effects downstream that strongly depend on characteristics of river valley.

The longest fragment drives fish beta diversity in fragmented river networks: Implications for river management and conservation

Connectivity plays a crucial role in maintaining the structural and functional attributes of river networks. Therefore, the loss of connectivity (fragmentation) alters the functioning and diversity patterns of the biota at local and regional scales. The global hydropower boom is one of the main drivers of river network fragmentation, with significant effects on the diversity of riverine biota. Analyses of beta diversity of fish assemblages in rivers with different degrees of fragmentation can give new insights into mechanisms that contribute to the responses of these assemblages to fragmentation. Here, fish beta diversity within six river networks of central Chile with different levels of fragmentation was studied to assess the responses of fish assemblages to fragmentation. A hypothesis of a significant effect of fragmentation on the beta diversity of native and non-native fish in riffles and pools was tested. This effect is expected to be modulated by both changes in environmental heterogeneity and direct obstruction of natural dispersal routes. Beta diversity based on variation of assemblage structure and environmental heterogeneity showed significant differences among river networks. Fish beta diversity showed a clear response to fragmentation in recently fragmented rivers. Specifically, the beta diversity of native fishes in pools and non-native fishes in riffles decreased with increase of the ratio between the longest non-fragmented sections of the river network to the total length of the network. These effects of fragmentation on fish assemblages were modulated by the biological features of each species, and open-water species were most severely affected. These results have significant implications for planning of the placement of new barriers in river networks subjected to hydropower boom. Planning of the placement of new barriers should consider the maintenance of long, connected sections within river networks in order to minimise the effects of fragmentation on fish biodiversity.

Hydrological connectivity drives longitudinal movement of endangered endemic Chilean darter Percilia irwini (Eigenmann, 1927)

Movement is a fundamental aspect of fish ecology, and it therefore represents an important trait to monitor for the management and conservation of fish populations. This is especially true for small benthic fish, as they often inhabit part of the catchment where their movement may be restricted by alterations to river connectivity due to human activity. Still, the movement of these small benthic fish remains poorly understood, partly because of their small size and their cryptic nature. This applies to Percilia irwini, an endangered small darter native to the south-central region of Chile. Its habitat has been affected by the presence of large hydroelectric dams and is currently threatened by the construction of several others. In this study, the authors investigated movement patterns of P. irwini from populations inhabiting different parts of the Biobío catchment, with different levels of connectivity due to natural and/or human-induced features. The authors combined chronological clustering with random forest classification to reconstruct lifelong movements from multi-elemental otolith microchemistry transects. The majority of the movements detected occurred in an undisturbed part of the catchment. These were directional upstream movements occurring between capture sites from the lower and the middle reaches of the river, representing a distance of nearly 30 km, a distance much larger than previously thought. Nonetheless, in the part of the catchment where connectivity was affected by human activity, no such movements were identified. This study shows that connectivity alteration could impede naturally occurring movement and further threaten the resilience of populations of P. irwini. Furthermore, the results presented are used to discuss advantages and disadvantages of microchemistry analysis for studying movement of small benthic fish.

Historical and Contemporary Diversity of Galaxiids in South America: Biogeographic and Phylogenetic Perspectives

Galaxiid fishes from South America are represented by three genera (Aplochiton, Brachygalaxias and Galaxias) and eight species. Their genetic patterns have been studied over the last two decades to disentangle how historical and contemporary processes influenced their biogeographic distribution and phylogeographic patterns. Here we review and synthesize this body of work. Phylogeographic approaches reveal the important role played by orogeny and the expansion/melting of glacial ice during the Quaternary. Populations retreated to glacial refugia during glacial times and some systems experienced drainage reversals from the Atlantic to the Pacific following deglaciation. Although most species expanded their populations and increased their genetic diversity during the Holocene, the introduction of salmonids and the construction of dams are likely to lead to a decline in genetic diversity for at least some species. An improvement in our understanding of the processes that influenced historical and contemporary diversity patterns among galaxiid and other native fishes in South America is necessary for addressing the cumulative and synergistic impacts of human activity on this unique freshwater fauna.

Strategic methodology to set priorities for sustainable hydropower development in a biodiversity hotspot

Massive exploitation of freshwater systems for hydropower generation in developing countries is challenging sustainability due to cumulative environmental impacts in regions with high endemism. Habitat fragmentation is recognized as a major impact on river ecosystems. The nature and magnitude of connectivity loss depend on characteristics of the hydropower projects, and of the threatened fish communities. In areas where appropriate mitigation technology is lacking, there is a need to identify the fish species that are most at risk to better concentrate efforts. This paper aimed to set conservation priorities for sustainable hydropower development by analyzing native fish species and project characteristics. The Chilean ichthyogeographic province, an ecoregion with high endemism and massive hydropower projects development, has been considered as a case study. By using overlapping information on the characteristics of 1124 hydropower projects and distribution of native fish species, we identified three project categories of projects based on their need for mitigation. These were projects where mitigation was considered: a) not required (15%), b) required and feasible (35%), and c) required but challenging (50%). Projects where mitigation was not required were located at sites where native fish were absent and/or where water intakes allowed fish to pass. Interestingly, projects where mitigation was feasible were inhabited by a species assemblage that comprised the genus Trichomycterus, Diplomystes and Percilia, and the species Ch. pisciculus and B. maldonadoi. This finding emphasizes the need to develop a multispecific fishway that can accommodate this group. Projects where mitigation would be difficult to achieve were located at sites with a variety of different assemblages, thus making a standard fish pass solution challenging and site-specific. This study advances understanding for the need to develop mitigation strategies and technologies in ecoregions of high endemism threatened by hydropower and to prioritize the construction of planned projects.

Human-induced habitat fragmentation effects on connectivity, diversity, and population persistence of an endemic fish, Percilia irwini, in the Biobío River basin (Chile)

An understanding of how genetic variability is distributed in space is fundamental for the conservation and maintenance of diversity in spatially fragmented and vulnerable populations. While fragmentation can occur from natural barriers, it can also be exacerbated by anthropogenic activities such as hydroelectric power plant development. Whatever the source, fragmentation can have significant ecological effects, including disruptions of migratory processes and gene flow among populations. In Chile, the Biobío River basin exhibits a high degree of habitat fragmentation due to the numerous hydroelectric power plants in operation, the number of which is expected to increase following new renewable energy use strategies. Here, we assessed the effects of different kinds of barriers on the genetic structure of the endemic freshwater fish Percilia irwini, knowledge that is critically needed to inform conservation strategies in light of current and anticipated further fragmentation initiatives in the system. We identified eight genetic units throughout the entire Biobío system with high effective sizes. A reduced effective size estimate was, however, observed in a single population located between two impassable barriers. Both natural waterfalls and human-made dams were important drivers of population differentiation in this system; however, dams affect genetic diversity differentially depending on their mode of operation. Evidence of population extirpation was found in two river stretches limited by upstream and downstream dams. Significant gene flow in both directions was found among populations not separated by natural or anthropogenic barriers. Our results suggest a significant vulnerability of P. irwini populations to future dam development and demonstrate the importance of studying basin-wide data sets with genetic metrics to understand the strength and direction of anthropogenic impacts on fish populations.

A Century after! Rediscovery of the ancient catfish Diplomystes Bleeker 1858 (Siluriformes: Diplomystidae) in coastal river basins of Chile and its implications for conservation

ABSTRACT The ancient catfish family Diplomystidae, with seven species endemic to rivers of southern South America, represents one of the oldest branches of the diverse order Siluriformes. With most species endangered, new reports of these species become extremely valuable for conservation. Currently, it is assumed that Diplomystes species inhabit only Andean (large) basins, and that they are extinct from coastal (small) basins from which their presence have not been recorded since 1919. Here, we document new records of the family Diplomystidae in the Laraquete and Carampangue basins, two coastal basins from the Nahuelbuta Coast Range, Chile, with no previous reports. This finding represents the rediscovery of the genus in coastal basins in more than a Century. Based on analysis of mitochondrial DNA sequences, the collected specimens were found to be closely related to Diplomystes nahuelbutaensis from the Andean Biobío Basin, but sufficiently differentiated to suggest that coastal basin populations are a different management unit. These populations are important because, contrary to previous thoughts, they prove these catfish can survive in small river networks, providing unique opportunities for research and conservation. The conservation category of Critically Endangered (CE) is recommended for the populations from the Laraquete and Carampangue basins.