1
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Takase D, Shirai T, Misawa K, Matsunami H, Yoshikawa K. An odorant receptor for a key odor constituent of ambergris. Commun Biol 2025; 8:792. [PMID: 40410270 PMCID: PMC12102163 DOI: 10.1038/s42003-025-08229-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2025] [Accepted: 05/14/2025] [Indexed: 05/25/2025] Open
Abstract
Ambergris, a substance derived from the digestive system of sperm whales, has been valued for centuries for its unique aromatic properties. However, historical accounts indicate that certain human populations, particularly in East Asia, utilized ambergris without regard for its odor quality. These observations suggest that ambergris offers a model for studying how pleasant olfactory perception and its regional variations are constructed. Despite its historical and cultural significance, the molecular basis of ambergris perception has remained unclear. Here, we identified OR7A17 as an odorant receptor tuned to (-)-Ambroxide, a key odorant in ambergris. Analysis of genetic and functional variations in OR7A17 revealed that non-functional alleles of this receptor are prevalent in human populations, especially in East Asia. Individuals lacking functional OR7A17 alleles could still detect (-)-Ambroxide but found its scent less pleasant compared to those with functional alleles. These findings elucidate a molecular mechanism that influences the perceived pleasantness of ambergris and shed light on its enduring legacy in perfumery.
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Affiliation(s)
- Dan Takase
- Sensory Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga, Tochigi, 321-3497, Japan
| | - Tomohiro Shirai
- Sensory Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga, Tochigi, 321-3497, Japan
| | - Kensuke Misawa
- Biological Material Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga, Tochigi, 321-3497, Japan
| | - Hiroaki Matsunami
- Department of Molecular Genetics and Microbiology, Department of Neurobiology, Duke Institute for Brain Sciences, Duke University, Durham, NC, 27710, USA
| | - Keiichi Yoshikawa
- Sensory Science Research, Kao Corporation, 2606 Akabane, Ichikai-machi, Haga, Tochigi, 321-3497, Japan.
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2
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Matějková T, Dodoková A, Kreisinger J, Stopka P, Stopková R. Microbial, proteomic, and metabolomic profiling of the estrous cycle in wild house mice. Microbiol Spectr 2024; 12:e0203723. [PMID: 38171017 PMCID: PMC10846187 DOI: 10.1128/spectrum.02037-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2023] [Accepted: 11/20/2023] [Indexed: 01/05/2024] Open
Abstract
Symbiotic microbial communities affect the host immune system and produce molecules contributing to the odor of an individual. In many mammalian species, saliva and vaginal fluids are important sources of chemical signals that originate from bacterial metabolism and may act as honest signals of health and reproductive status. In this study, we aimed to define oral and vaginal microbiomes and their dynamics throughout the estrous cycle in wild house mice. In addition, we analyzed a subset of vaginal proteomes and metabolomes to detect potential interactions with microbiomes. 16S rRNA sequencing revealed that both saliva and vagina are dominated by Firmicutes and Proteobacteria but differ at the genus level. The oral microbiome is more stable during the estrous cycle and most abundant bacteria belong to the genera Gemella and Streptococcus, while the vaginal microbiome shows higher bacterial diversity and dynamics during the reproductive cycle and is characterized by the dominance of Muribacter and Rodentibacter. These two genera cover around 50% of the bacterial community during estrus. Proteomic profiling of vaginal fluids revealed specific protein patterns associated with different estrous phases. Highly expressed proteins in estrus involve the keratinization process thus providing estrus markers (e.g., Hrnr) while some proteins are downregulated such as immune-related proteins that limit bacterial growth (Camp, Clu, Elane, Lyz2, and Ngp). The vaginal metabolome contains volatile compounds potentially involved in chemical communication, for example, ketones, aldehydes, and esters of carboxylic acids. Data integration of all three OMICs data sets revealed high correlations, thus providing evidence that microbiomes, host proteomes, and metabolomes may interact.IMPORTANCEOur data revealed dynamic changes in vaginal, but not salivary, microbiome composition during the reproductive cycle of wild mice. With multiple OMICs platforms, we provide evidence that changes in microbiota in the vaginal environment are accompanied by changes in the proteomic and metabolomics profiles of the host. This study describes the natural microbiota of wild mice and may contribute to a better understanding of microbiome-host immune system interactions during the hormonal and cellular changes in the female reproductive tract. Moreover, analysis of volatiles in the vaginal fluid shows particular substances that can be involved in chemical communication and reproductive behavior.
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Affiliation(s)
- Tereza Matějková
- Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec, Czechia
| | - Alica Dodoková
- Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec, Czechia
| | - Jakub Kreisinger
- Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec, Czechia
| | - Pavel Stopka
- Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec, Czechia
| | - Romana Stopková
- Department of Zoology, Faculty of Science, Charles University, BIOCEV, Vestec, Czechia
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3
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Liu MT, Na M, Li Y, Biscoe MR, Ryan K. Conformational Sensing by a Mammalian Olfactory Receptor. Chemistry 2020; 26:11462-11469. [PMID: 32691933 DOI: 10.1002/chem.202001390] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2020] [Revised: 05/22/2020] [Indexed: 01/08/2023]
Abstract
To identify odors, the mammalian nose deploys hundreds of olfactory receptors (ORs) from the rhodopsin-like class of the G protein-coupled receptor superfamily. Odorants having multiple rotatable bonds present a problem for the stereochemical shape-based matching process assumed to govern the sense of smell through OR-odorant recognition. We conformationally restricted the carbon chain of the odorant octanal to ask whether an OR can respond differently to different odorant conformations. By using calcium imaging to monitor signal transduction in sensory neurons expressing the mouse aldehyde OR, Olfr2, we found that the spatial position of the C7 and C8 carbon atoms of octanal, in relation to its -CHO group, determines whether an aliphatic aldehyde functions as an agonist, partial agonist or antagonist. Our experiments provide evidence that an odorant can manipulate an OR through its intrinsic conformational repertoire, in unexpected analogy to the photon-controlled aldehyde manipulation observed in rhodopsin.
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Affiliation(s)
- Min Ting Liu
- Department of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA.,Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA
| | - Mihwa Na
- Department of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA.,Ph.D. Program in Biochemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA
| | - Yadi Li
- Department of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA.,Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA
| | - Mark R Biscoe
- Department of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA.,Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA
| | - Kevin Ryan
- Department of Chemistry and Biochemistry, The City College of New York, New York, NY, 10031, USA.,Ph.D. Program in Chemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA.,Ph.D. Program in Biochemistry, The Graduate Center of the City University of New York, New York, NY, 10016, USA
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4
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Poivet E, Peterlin Z, Tahirova N, Xu L, Altomare C, Paria A, Zou DJ, Firestein S. Applying medicinal chemistry strategies to understand odorant discrimination. Nat Commun 2016; 7:11157. [PMID: 27040654 PMCID: PMC4822015 DOI: 10.1038/ncomms11157] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2015] [Accepted: 02/25/2016] [Indexed: 11/09/2022] Open
Abstract
Associating an odorant's chemical structure with its percept is a long-standing challenge. One hindrance may come from the adoption of the organic chemistry scheme of molecular description and classification. Chemists classify molecules according to characteristics that are useful in synthesis or isolation, but which may be of little importance to a biological sensory system. Accordingly, we look to medicinal chemistry, which emphasizes biological function over chemical form, in an attempt to discern which among the many molecular features are most important for odour discrimination. Here we use medicinal chemistry concepts to assemble a panel of molecules to test how heteroaromatic ring substitution of the benzene ring will change the odour percept of acetophenone. This work allows us to describe an extensive rule in odorant detection by mammalian olfactory receptors. Whereas organic chemistry would have predicted the ring size and composition to be key features, our work reveals that the topological polar surface area is the key feature for the discrimination of these odorants. Understanding the basis of odour perception and discrimination is a challenging task, due to the inherent complexity of the olfactory system. Here, the authors use a medicinal chemistry approach to derive biologically relevant rules for odorant classification.
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Affiliation(s)
- Erwan Poivet
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
| | - Zita Peterlin
- Corporate Research and Development, Firmenich Incorporated, Plainsboro, New Jersey 08536, USA
| | - Narmin Tahirova
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
| | - Lu Xu
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
| | - Clara Altomare
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
| | - Anne Paria
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
| | - Dong-Jing Zou
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
| | - Stuart Firestein
- Department of Biological Sciences, Columbia University, New York, New York 10027, USA
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5
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Ito K, Akahoshi Y, Ito M, Kaneko S. Sedative effects of inhaled essential oil components of traditional fragrance Pogostemon cablin leaves and their structure-activity relationships. J Tradit Complement Med 2015; 6:140-5. [PMID: 27114936 PMCID: PMC4833466 DOI: 10.1016/j.jtcme.2015.01.004] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2014] [Revised: 01/08/2015] [Accepted: 01/09/2015] [Indexed: 01/18/2023] Open
Abstract
Plants rich in essential oils, such as Pogostemon cablin (P. cablin; guǎng huò xiāng), have been used for aromas and as herbal medicines since ancient times because of their sedative effects. We investigated the sedative effects of hexane extract from P. cablin using locomotor activity in mice. Inhalation of P. cablin hexane extract exhibited significant sedative activity in a dose-dependent manner. In order to isolate the active constituents, the extract was fractionated and diacetone alcohol was identified as an active compound. Inhalation of diacetone alcohol significantly reduced murine locomotor activity in a dose-dependent manner, and this effect was not observed in olfaction-impaired mice. We examined the structure-activity relationship of diacetone alcohol and similar compounds. The ketone group at the two-position and number of carbons may play important roles in the sedative activity of diacetone alcohol.
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Affiliation(s)
- Ken Ito
- Department of Pharmacognosy, Graduate School of Pharmaceutical Science, Kyoto University, Sakyo-ku, Kyoto, Japan; Division of Medicinal Chemical Sciences, Pharmacognosy, Kyoto Pharmaceutical University, Yamashinaku, Kyoto, Japan; The Museum of Osaka University, Osaka University, Toyonaka, Japan
| | - Yasuko Akahoshi
- Department of Pharmacognosy, Graduate School of Pharmaceutical Science, Kyoto University, Sakyo-ku, Kyoto, Japan
| | - Michiho Ito
- Department of Pharmacognosy, Graduate School of Pharmaceutical Science, Kyoto University, Sakyo-ku, Kyoto, Japan
| | - Shuji Kaneko
- Department of Molecular Pharmacology, Graduate School of Pharmaceutical Sciences, Kyoto University, Sakyo-ku, Kyoto, Japan
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6
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Li Y, Peterlin Z, Ho J, Yarnitzky T, Liu MT, Fichman M, Niv MY, Matsunami H, Firestein S, Ryan K. Aldehyde recognition and discrimination by mammalian odorant receptors via functional group-specific hydration chemistry. ACS Chem Biol 2014; 9:2563-71. [PMID: 25181321 PMCID: PMC4245160 DOI: 10.1021/cb400290u] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
![]()
The mammalian odorant
receptors (ORs) form a chemical-detecting
interface between the atmosphere and the nervous system. This large
gene family is composed of hundreds of membrane proteins predicted
to form as many unique small molecule binding niches within their
G-protein coupled receptor (GPCR) framework, but very little is known
about the molecular recognition strategies they use to bind and discriminate
between small molecule odorants. Using rationally designed synthetic
analogs of a typical aliphatic aldehyde, we report evidence that among
the ORs showing specificity for the aldehyde functional group, a significant
percentage detect the aldehyde through its ability to react with water
to form a 1,1-geminal (gem)-diol.
Evidence is presented indicating that the rat OR-I7, an often-studied
and modeled OR known to require the aldehyde function of octanal for
activation, is likely one of the gem-diol activated
receptors. A homology model based on an activated GPCR X-ray structure
provides a structural hypothesis for activation of OR-I7 by the gem-diol of octanal.
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Affiliation(s)
- Yadi Li
- Department
of Chemistry, The City College of New York, and Biochemistry Program, The City University of New York Graduate Center, New York, New York 10031, United States
| | - Zita Peterlin
- Department
of Biological Sciences, Columbia University, New York, New York 10027, United States
| | - Jianghai Ho
- Department
of Molecular Genetics and Microbiology, and Neurobiology, Duke University Medical Center, Durham, North Carolina 27710 United States
| | - Tali Yarnitzky
- Institute
of Biochemistry, Food Science, and Nutrition, The Robert H. Smith
Faculty of Agriculture, Food and Environment, The Hebrew University, Rehovot 76100, Israel
| | - Min Ting Liu
- Department
of Chemistry, The City College of New York, and Biochemistry Program, The City University of New York Graduate Center, New York, New York 10031, United States
| | - Merav Fichman
- Institute
of Biochemistry, Food Science, and Nutrition, The Robert H. Smith
Faculty of Agriculture, Food and Environment, The Hebrew University, Rehovot 76100, Israel
| | - Masha Y. Niv
- Institute
of Biochemistry, Food Science, and Nutrition, The Robert H. Smith
Faculty of Agriculture, Food and Environment, The Hebrew University, Rehovot 76100, Israel
| | - Hiroaki Matsunami
- Department
of Molecular Genetics and Microbiology, and Neurobiology, Duke University Medical Center, Durham, North Carolina 27710 United States
| | - Stuart Firestein
- Department
of Biological Sciences, Columbia University, New York, New York 10027, United States
| | - Kevin Ryan
- Department
of Chemistry, The City College of New York, and Biochemistry Program, The City University of New York Graduate Center, New York, New York 10031, United States
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7
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Peterlin Z, Firestein S, Rogers ME. The state of the art of odorant receptor deorphanization: a report from the orphanage. ACTA ACUST UNITED AC 2014; 143:527-42. [PMID: 24733839 PMCID: PMC4003190 DOI: 10.1085/jgp.201311151] [Citation(s) in RCA: 67] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
The odorant receptors (ORs) provide our main gateway to sensing the world of volatile chemicals. This involves a complex encoding process in which multiple ORs, each of which detects its own set of odorants, work as an ensemble to produce a distributed activation code that is presumably unique to each odorant. One marked challenge to decoding the olfactory code is OR deorphanization, the identification of a set of activating odorants for a particular receptor. Here, we survey various methods used to try to express defined ORs of interest. We also suggest strategies for selecting odorants for test panels to evaluate the functional expression of an OR. Integrating these tools, while retaining awareness of their idiosyncratic limitations, can provide a multi-tiered approach to OR deorphanization, spanning the initial discovery of a ligand to vetting that ligand in a physiologically relevant setting.
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Affiliation(s)
- Zita Peterlin
- Corporate Research and Development, Firmenich Incorporated, Plainsboro, NJ 08536
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8
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Overath P, Sturm T, Rammensee HG. Of volatiles and peptides: in search for MHC-dependent olfactory signals in social communication. Cell Mol Life Sci 2014; 71:2429-42. [PMID: 24496643 PMCID: PMC4055862 DOI: 10.1007/s00018-014-1559-6] [Citation(s) in RCA: 26] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/17/2013] [Accepted: 01/06/2014] [Indexed: 01/11/2023]
Abstract
Genes of the major histocompatibility complex (MHC), which play a critical role in immune recognition, are considered to influence social behaviors in mice, fish, humans, and other vertebrates via olfactory cues. As studied most extensively in mice, the polymorphism of MHC class I genes is considered to bring about a specific scent signature, which is decoded by the olfactory system resulting in an individual-specific reaction such as mating. On the assumption that this signature resides in volatiles, extensive attempts to identify these MHC-specific components in urine failed. Alternatively, it has been suggested that peptide ligands of MHC class I molecules are released into urine and can elicit an MHC-haplotype-specific behavioral response after uptake into the nose by sniffing. Analysis of the urinary peptide composition of mice shows that MHC-derived peptides are present, albeit in extremely low concentrations. In contrast, urine contains abundant peptides which differ between mouse strains due to genomic variations such as single-nucleotide variations or complex polymorphisms in multigene families as well as in their concentration. Thus, urinary peptides represent a real-time sampling of the expressed genome available for sensory evaluation. It is suggested that peptide variation caused by genomic differences contains sufficient information for individual recognition beyond or instead of an influence of the MHC in mice and other vertebrates.
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Affiliation(s)
- Peter Overath
- Interfakultäres Institut für Zellbiologie, Abteilung Immunologie, Universität Tübingen, Auf der Morgenstelle 15, 72076, Tübingen, Germany,
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9
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Ukhanov K, Corey EA, Ache BW. Phosphoinositide 3-kinase dependent inhibition as a broad basis for opponent coding in Mammalian olfactory receptor neurons. PLoS One 2013; 8:e61553. [PMID: 23585911 PMCID: PMC3621990 DOI: 10.1371/journal.pone.0061553] [Citation(s) in RCA: 18] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2013] [Accepted: 03/11/2013] [Indexed: 11/18/2022] Open
Abstract
Phosphoinositide 3-kinase (PI3K) signaling has been implicated in mediating inhibitory odorant input to mammalian olfactory receptor neurons (ORNs). To better understand the breadth of such inhibition in odor coding, we screened a panel of odorants representing different chemical classes, as well as odorants known to occur in a natural odor object (tomato), for their ability to rapidly activate PI3K-dependent inhibitory signaling. Odorants were screened on dissociated native rat ORNs before and after pre-incubation with the PI3K-isoform specific blockers AS252424 and TGX221. Many different odorants increased their excitatory strength for particular ORNs following PI3K blockade in a manner consistent with activating PI3K-dependent inhibitory signaling in those cells. The PI3K-dependent inhibitory odorants overlapped with conventional excitatory odorants, but did not share the same bias, indicating partial partitioning of the odor space. Finding that PI3K-dependent inhibition can be activated by a wide range of otherwise conventional excitatory odorants strongly implies PI3K-dependent inhibition provides a broad basis for opponent coding in mammalian ORNs.
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Affiliation(s)
- Kirill Ukhanov
- Whitney Laboratory, Center for Smell and Taste, McKnight Brain Institute; University of Florida, Gainesville, Florida, United States of America.
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10
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Abstract
Mammalian species have evolved a large and diverse number of odorant receptors (ORs). These proteins comprise the largest family of G-protein-coupled receptors (GPCRs) known, amounting to ~1,000-different receptors in the rodent. From the perspective of olfactory coding, the availability of such a vast number of chemosensory receptors poses several fascinating questions; in addition, such a large repertoire provides an attractive biological model to study ligand-receptor interactions. The limited functional expression of these receptors in heterologous systems, however, has greatly hampered attempts to deorphanize them. We have employed a successful approach that combines electrophysiological and imaging techniques to analyze the response profiles of single sensory neurons. Our approach has enabled us to characterize the "odor space" of a population of native aldehyde receptors and the molecular range of a genetically engineered receptor, OR-I7.
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Affiliation(s)
- Richard S Smith
- Department of Biology, University of Maryland, College Park, MD, USA
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11
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Anselmi C, Buonocore A, Centini M, Facino RM, Hatt H. The human olfactory receptor 17-40: requisites for fitting into the binding pocket. Comput Biol Chem 2011; 35:159-68. [PMID: 21704262 DOI: 10.1016/j.compbiolchem.2011.04.011] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2011] [Accepted: 04/26/2011] [Indexed: 10/18/2022]
Abstract
To gain structural insight on the interactions between odorants and the human olfactory receptor, we did homology modelling of the receptor structure, followed by molecular docking simulation with ligands. Molecular dynamics simulation on the structures resulting from docking served to estimate the binding free energy of the various odorant families. A correlation with the odorous properties of the ligands is proposed. We also investigated which residues were involved in the binding of a set of properly synthesised ligands and which were required for fitting inside the binding pocket. Olfactive stimulation of the olfactory receptor with odorous molecules was also investigated, using calcium imaging or electrophysiological recordings.
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Affiliation(s)
- Cecilia Anselmi
- Dipartimento Farmaco Chimico Tecnologico - Centro Interdipartimentale di Scienza e Tecnologia Cosmetiche, University of Siena, Via della Diana 2, 53100 Siena, Italy.
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12
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Soh Z, Tsuji T, Takiguchi N, Ohtake H. An Artificial Neural Network Approach for Glomerular Activity Pattern Prediction Using the Graph Kernel Method and the Gaussian Mixture Functions. Chem Senses 2011; 36:413-24. [DOI: 10.1093/chemse/bjq147] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
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13
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Peterlin Z, Li Y, Sun G, Shah R, Firestein S, Ryan K. The importance of odorant conformation to the binding and activation of a representative olfactory receptor. CHEMISTRY & BIOLOGY 2008; 15:1317-27. [PMID: 19101476 PMCID: PMC2628580 DOI: 10.1016/j.chembiol.2008.10.014] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 08/19/2008] [Revised: 10/19/2008] [Accepted: 10/27/2008] [Indexed: 11/28/2022]
Abstract
Olfactory receptors (ORs) form a large family of G protein-coupled receptor proteins (GPCRs) responsible for sensing the ambient chemical environment. The molecular recognition strategies used by ORs to detect and distinguish odorant molecules are unclear. Here, we investigated the variable of odorant carbon chain conformation for an established odorant-OR pair: n-octanal and rat OR-I7. A series of conformationally restricted octanal mimics were tested on live olfactory sensory neurons (OSNs). Our results support a model in which unactivated OR-I7 binds aliphatic aldehydes indiscriminately, and then applies conformational and length filters to distinguish agonists from antagonists. Specific conformers are proposed to activate OR-I7 by steric buttressing of an OR activation pocket. Probing endogenously expressed rat OSNs with octanal and constrained mimics furnished evidence that odorant conformation contributes to an odorant's unique olfactory code signature.
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Affiliation(s)
- Zita Peterlin
- Department of Biological Sciences, Columbia University, New York, NY 10027, USA
| | - Yadi Li
- Department of Chemistry and Biochemistry, City College of New York, and Graduate School, City University of New York, New York, NY 10032, USA
| | - Guangxing Sun
- Department of Chemistry and Biochemistry, City College of New York, and Graduate School, City University of New York, New York, NY 10032, USA
| | - Rohan Shah
- Department of Chemistry and Biochemistry, City College of New York, and Graduate School, City University of New York, New York, NY 10032, USA
| | - Stuart Firestein
- Department of Biological Sciences, Columbia University, New York, NY 10027, USA
| | - Kevin Ryan
- Department of Chemistry and Biochemistry, City College of New York, and Graduate School, City University of New York, New York, NY 10032, USA
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14
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Haddad R, Khan R, Takahashi YK, Mori K, Harel D, Sobel N. A metric for odorant comparison. Nat Methods 2008; 5:425-9. [DOI: 10.1038/nmeth.1197] [Citation(s) in RCA: 169] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/03/2007] [Accepted: 03/13/2008] [Indexed: 11/09/2022]
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15
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Barbour J, Neuhaus EM, Piechura H, Stoepel N, Mashukova A, Brunert D, Sitek B, Stühler K, Meyer HE, Hatt H, Warscheid B. New insight into stimulus-induced plasticity of the olfactory epithelium in Mus musculus by quantitative proteomics. J Proteome Res 2008; 7:1594-605. [PMID: 18336002 DOI: 10.1021/pr7005796] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]
Abstract
The olfactory system is exposed to a plethora of chemical compounds throughout an organism's lifespan. Anticipation of stimuli and construction of appropriate neural filters present a significant challenge. This may be addressed via modulation of the protein composition of the sensory epithelium in response to environmental conditions. To reveal the mechanisms governing these changes, we employed a comprehensive quantitative proteomics strategy. Two groups of juvenile mice were treated with either pulsed or continuous application of octanal. After 20 days of treatment, we performed a behavioral study and conducted electrophysiological recordings from the olfactory epithelium (OE). Both treated groups demonstrated peripheral desensitization to octanal; however, only the 'continuous' group exhibited habituation. To obtain novel insight into the molecular mechanisms underpinning the peripheral desensitization to octanal, the OE proteomes of octanal-treated mice versus control were quantitatively analyzed using two-dimensional difference gel electrophoresis. We identified several significantly regulated proteins that were functionally classified as calcium-binding proteins, cytoskeletal proteins, and lipocalins. The calcium-binding proteins and cytoskeletal proteins were up-regulated in the 'pulsed' group, whereas in the 'continuous' group, four lipocalins were significantly down-regulated. Uniquely, the lipocalin odorant-binding protein Ia was drastically down-regulated in both groups. The identified proteins reflect changes throughout the entire OE, corresponding to changes in neuronal, non-neuronal, and pericellular processes. We report the regulation of several promising candidates for the investigation of odorant-induced changes of the OE. Among these proteins are different lipocalins, which seem to play a crucial role in the regulation of the sensitivity of the olfactory system.
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Affiliation(s)
- Jon Barbour
- Medizinisches Proteom-Center, Ruhr-University Bochum, Universitätsstrasse 150, 44780 Bochum, Germany
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16
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Liang HC, Shi DZ. The difference of urine between Brandt’s voleLasiopodomys brandtii in the breeding and non-breeding condition. ACTA ACUST UNITED AC 2007. [DOI: 10.1007/bf03194223] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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17
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Röck F, Mueller S, Weimar U, Rammensee HG, Overath P. Comparative analysis of volatile constituents from mice and their urine. J Chem Ecol 2006; 32:1333-46. [PMID: 16770722 DOI: 10.1007/s10886-006-9091-2] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2005] [Revised: 03/03/2006] [Accepted: 03/09/2006] [Indexed: 10/24/2022]
Abstract
We report the volatile composition of the body scent of male C57BL/6J mice in comparison to the volatile composition of their urine. From a total of 67 components, nitromethane, propanoic acid, dimethyldisulfide, 1-octene, 1-hexanol, hexanoic acid, indole, alpha- and beta-farnesene, and one unidentified component were observed only in the volatiles from the body of mice. On the other hand, 3-penten-2-one, 3-methyl-2-buten-1-ol, 3-methyl-cyclopentanone, p-xylene, 3-hepten-2-one, 2,3-dehydro-exo-brevicomin, benzylmethylketone, and 13 unidentified components were only found in urine volatiles. All other substances were present in the volatiles of both mice and their urine. Aliphatic aldehydes from pentanal to decanal were prominent mouse odor components. Because receptors for these aldehydes have been extensively characterized in the main olfactory organ, these components may be important for mice in recognizing their conspecifics.
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Affiliation(s)
- Frank Röck
- Institut für Physikalische Chemie, Interfakultäres Institut für Zellbiologie, Universität Tübingen, Germany
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18
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Laska M, Rivas Bautista RM, Hernandez Salazar LT. Olfactory sensitivity for aliphatic alcohols and aldehydes in spider monkeys (Ateles geoffroyi). AMERICAN JOURNAL OF PHYSICAL ANTHROPOLOGY 2005; 129:112-20. [PMID: 16245343 DOI: 10.1002/ajpa.20252] [Citation(s) in RCA: 41] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
Using a conditioning paradigm, the olfactory sensitivity of five spider monkeys for homologous series of aliphatic 1-alcohols (1-propanol to 1-octanol) and n-aldehydes (n-butanal to n-nonanal) was investigated. With the exception of 1-propanol, the animals significantly discriminated concentrations below 1 ppm from the odorless solvent, and in several cases, individual monkeys even demonstrated detection thresholds below 10 ppb. The results showed 1) spider monkeys to have a well-developed olfactory sensitivity for both substance classes, which for the majority of alcohols tested matches or even is better than that of the rat, and 2) a significant negative correlation between perceptibility in terms of olfactory detection thresholds and carbon chain length of the alcohols, but not of the aldehydes tested. These findings lend further support to the growing body of evidence suggesting that between-species comparisons of the number of functional olfactory receptor genes or of neuroanatomical features are poor predictors of olfactory performance, and that general labels such as "microsmat" or "macrosmat" (which are usually based on allometric comparisons of olfactory brain structures) are inadequate to describe a species' olfactory capabilities.
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Affiliation(s)
- Matthias Laska
- Department of Medical Psychology, University of Munich Medical School, Germany.
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19
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Johnson BA, Farahbod H, Xu Z, Saber S, Leon M. Local and global chemotopic organization: General features of the glomerular representations of aliphatic odorants differing in carbon number. J Comp Neurol 2004; 480:234-49. [PMID: 15514935 DOI: 10.1002/cne.20335] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Abstract
To determine whether there is a general strategy used by the olfactory system to represent odorants differing in carbon chain length, rats were exposed to homologous series of straight-chained, saturated aliphatic aldehydes, ethyl esters, acetates, ketones, primary alcohols, and secondary alcohols (32 odorants total). Neural activity across the entire glomerular layer of the olfactory bulb was mapped quantitatively by measuring uptake of [14C]2-deoxyglucose evoked by each odorant. Uptake was observed both in dorsal glomerular modules previously associated with the particular odorant functional groups and in more ventral and posterior modules. Aldehyde-evoked activity patterns were dominated by ventral modules that included the area receiving projections from octanal-responsive sensory neurons expressing the I7 odorant receptor. The dorsal area that has been the focus of optical imaging studies of aldehyde responses contained only minor activity. For all functional groups except for ketones, uptake within functional group-sensitive modules displayed local chemotopy, with longer odorants stimulating more ventral and rostral glomeruli. In more posterior regions, chemotopy was observed for all functional groups, again with uptake shifting ventrally and rostrally with increasing chain length. In addition to these local shifts in activity, correlations analysis of entire activity patterns revealed a global chemotopic organization for all odorant series, with each odorant evoking a pattern most similar to odorants possessing the same functional group but differing by only one carbon in length. Thus, global chemotopy and local modular chemotopy appear to be fundamental principles underlying the representation of odorants differing in carbon chain length.
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Affiliation(s)
- Brett A Johnson
- Department of Neurobiology and Behavior, University of California, Irvine, Irvine, California 92697-4550, USA.
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20
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Laska M, Miethe V, Rieck C, Weindl K. Olfactory sensitivity for aliphatic ketones in squirrel monkeys and pigtail macaques. Exp Brain Res 2004; 160:302-11. [PMID: 15300348 DOI: 10.1007/s00221-004-2012-0] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2004] [Accepted: 06/14/2004] [Indexed: 10/26/2022]
Abstract
Using a conditioning paradigm, the olfactory sensitivity of three squirrel monkeys and three pigtail macaques for homologous series of aliphatic 2-ketones (2-butanone to 2-nonanone), symmetrical ketones (3-pentanone to 6-undecanone), and C7-ketones (2-heptanone to 4-heptanone) was assessed. In the majority of cases, the animals of both species significantly discriminated concentrations below 1 ppm from the odorless solvent, and with 2-nonanone and 5-nonanone the monkeys even demonstrated thresholds below 1 ppb. The results showed both primate species have a well-developed olfactory sensitivity for aliphatic ketones, and pigtail macaques generally perform better than squirrel monkeys in detecting members of this class of odorants. Further, in both species tested, we found a significant negative correlation between perceptibility in terms of olfactory detection thresholds and carbon-chain length of both the 2-ketones and the symmetrical ketones, but not between detection thresholds and position of the functional group with the C7-ketones. These findings lend further support to the growing body of evidence suggesting that between-species comparisons of the number of functional olfactory receptor genes or of neuroanatomical features are poor predictors of olfactory performance.
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Affiliation(s)
- Matthias Laska
- Department of Medical Psychology, University of Munich Medical School, Goethestr. 31, 80336 Munich, Germany.
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21
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Araneda RC, Peterlin Z, Zhang X, Chesler A, Firestein S. A pharmacological profile of the aldehyde receptor repertoire in rat olfactory epithelium. J Physiol 2004; 555:743-56. [PMID: 14724183 PMCID: PMC1664868 DOI: 10.1113/jphysiol.2003.058040] [Citation(s) in RCA: 108] [Impact Index Per Article: 5.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022] Open
Abstract
Several lines of evidence suggest that odorants are recognized through a combinatorial process in the olfactory system; a single odorant is recognized by multiple receptors and multiple odorants are recognized by the same receptor. However few details of how this might actually function for any particular odour set or receptor family are available. Approaching the problem from the ligands rather than the receptors, we used the response to a common odorant, octanal, as the basis for defining multiple receptor profiles. Octanal and other aldehydes induce large EOG responses in the rodent olfactory epithelium, suggesting that these compounds activate a large number of odour receptors (ORs). Here, we have determined and compared the pharmacological profile of different octanal receptors using Ca(2+) imaging in isolated olfactory sensory neurones (OSNs). It is believed that each OSN expresses only one receptor, thus the response profile of each cell corresponds to the pharmacological profile of one particular receptor. We stimulated the cells with a panel of nine odorants, which included octanal, octanoic acid, octanol and cinnamaldehyde among others (all at 30microM). Cluster analysis revealed several distinct pharmacological profiles for cells that were all sensitive to octanal. Some receptors had a broad molecular range, while others were activated only by octanal. Comparison of the profiles with that of the one identified octanal receptor, OR-I7, indicated several differences. While OR-I7 is activated by low concentrations of octanal and blocked by citral, other receptors were less sensitive to octanal and not blocked by citral. A lower estimate for the maximal number of octanal receptors is between 33 and 55. This large number of receptors for octanal suggests that, although the peripheral olfactory system is endowed with high sensitivity, discrimination among different compounds probably requires further central processing.
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Affiliation(s)
- Ricardo C Araneda
- Department of Biological Sciences, Columbia University, New York, NY 10027, USA.
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Wilson DA, Stevenson RJ. Olfactory perceptual learning: the critical role of memory in odor discrimination. Neurosci Biobehav Rev 2003; 27:307-28. [PMID: 12946684 DOI: 10.1016/s0149-7634(03)00050-2] [Citation(s) in RCA: 136] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/27/2022]
Abstract
The major problem in olfactory neuroscience is to determine how the brain discriminates one odorant from another. The traditional approach involves identifying how particular features of a chemical stimulus are represented in the olfactory system. However, this perspective is at odds with a growing body of evidence, from both neurobiology and psychology, which places primary emphasis on synthetic processing and experiential factors--perceptual learning--rather than on the structural features of the stimulus as critical for odor discrimination. In the present review of both psychological and sensory physiological data, we argue that the initial odorant feature extraction/analytical processing is not behaviorally/consciously accessible, but rather is a first necessary stage for subsequent cortical synthetic processing which in turn drives olfactory behavior. Cortical synthetic coding reflects an experience-dependent process that allows synthesis of novel co-occurring features, similar to processes used for visual object coding. Thus, we propose that experience and cortical plasticity are not only important for traditional associative olfactory memory (e.g. fear conditioning, maze learning, and delayed-match-to-sample paradigms), but also play a critical, defining role in odor discrimination.
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Affiliation(s)
- Donald A Wilson
- Department of Zoology, University of Oklahoma, Norman, OK 73019, USA.
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Levasseur G, Persuy MA, Grebert D, Remy JJ, Salesse R, Pajot-Augy E. Ligand-specific dose-response of heterologously expressed olfactory receptors. EUROPEAN JOURNAL OF BIOCHEMISTRY 2003; 270:2905-12. [PMID: 12823561 DOI: 10.1046/j.1432-1033.2003.03672.x] [Citation(s) in RCA: 51] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
Abstract
Primary olfactory neuronal cultures exposed to odorant stimulation have previously exhibited concentration-related effects in terms of intracellular cAMP levels and adenylate cyclase activity [Ronnett, G.V., Parfitt, D.J., Hester, L.D. & Snyder, S.H. (1991) PNAS88, 2366-2369]. Maximal stimulation occurred for intermediate concentrations, whereas AC activity declined for both low and high odorant concentrations. We suspected that this behavior might be ascribed to the intrinsic response of the first molecular species concerned by odorant detection, i.e. the olfactory receptor itself. In order to check this hypothesis, we developed an heterologous expression system in mammalian cells to characterize the functional response of receptors to odorants. Two mammalian olfactory receptors were used to initiate the study, the rat I7 olfactory receptor and the human OR17-40 olfactory receptor. The cellular response of transfected cells to an odorant stimulation was tested by a spectrofluorimetric intracellular calcium assay, and proved in all cases to be dose-dependent for the known ligands of these receptors, with an optimal response for intermediate concentrations. Further experiments were carried out with the rat I7 olfactory receptor, for which the sensitivity to an odorant, indicated by the concentration yielding the optimal calcium response, depended on the carbon chain length of the aldehydic odorant. The response is thus both ligand-specific and dose-dependent. We thus demonstrate that a differential dose-response originates from the olfactory receptor itself, which is thus capable of efficient discrimination between closely related agonists.
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Affiliation(s)
- Grégoire Levasseur
- INRA-Biotechnologies, Neurobiologie de l'Olfaction et de la Prise Alimentaire, Récepteurs et Communication Chimique, Jouy-en-Josas, France
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24
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Hernandez Salazar LT, Laska M, Rodriguez Luna E. Olfactory Sensitivity for Aliphatic Esters in Spider Monkeys (Ateles geoffroyi). Behav Neurosci 2003; 117:1142-9. [PMID: 14674835 DOI: 10.1037/0735-7044.117.6.1142] [Citation(s) in RCA: 50] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
Using a conditioning paradigm, the authors investigated the olfactory sensitivity of 3 spider monkeys (Ateles geoffroyi) for a homologous series of aliphatic esters (ethyl acetate to n-octyl acetate) and isomeric forms of some of these substances. With all odorants, the monkeys significantly discriminated concentrations below 1 ppm from the odorless solvent, and in several cases, individual monkeys even demonstrated thresholds below 1 ppb. The results showed spider monkeys to have a high olfactory sensitivity for aliphatic esters, which for the majority of substances matches or even is better than that of species such as the rat, the mouse, or the dog. These findings support the assumption that between-species comparisons of neuroanatomical features are poor predictors of olfactory performance.
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Abstract
Carbon chain length in several classes of straight-chain aliphatic odorants has been proposed as a model axis of similarity for olfactory research, on the basis of successes of studies in insect and vertebrate species. To assess the influence of task on measured perceptual similarities among odorants and to demonstrate that the systematic similarities observed within homologous odorant series are not task specific, the authors compare 3 different behavioral paradigms for rats (olfactory habituation, generalization, and discrimination). Although overall patterns of odorant similarity are consistent across all 3 of these paradigms, both quantitative measurements of perceptual similarity and comparability with 2-deoxyglucose imaging data from the olfactory bulb are dependent on the specific behavioral tasks used. Thus, behavioral indices of perceptual similarity are affected by task parameters such as learning and reward associations.
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Affiliation(s)
- Thomas A Cleland
- Department of Neurobiology and Behavior, Cornell University, Ithaca, New York 14853, USA
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26
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Wilson DA. Comparison of odor receptive field plasticity in the rat olfactory bulb and anterior piriform cortex. J Neurophysiol 2000; 84:3036-42. [PMID: 11110830 DOI: 10.1152/jn.2000.84.6.3036] [Citation(s) in RCA: 82] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022] Open
Abstract
Recent work in the anterior piriform cortex (aPCX) has demonstrated that cortical odor receptive fields are highly dynamic, showing rapid changes of both firing rate and temporal patterning within relatively few inhalations of an odor, despite relatively maintained, patterned input from olfactory bulb mitral/tufted cells. The present experiment examined the precision (odor-specificity) of this receptive field plasticity and compared it with the primary cortical afferent, olfactory bulb mitral/tufted cells. Adult Long-Evans hooded rats, urethan anesthetized and freely breathing, were used for single-unit recording from mitral/tufted and aPCX layer II/III neurons. Partial mapping of receptive fields to alkane odors (pentane, heptane, and nonane) was performed before and immediately after habituation (50-s exposure) to one of the alkanes. The results demonstrated that odor habituation of aPCX responses was odor specific, with minimal cross-habituation between alkanes differing by as few as two carbons. Mitral/tufted cells, however, showed strong cross-habituation within the odor set with the most profound cross effects to carbon chains shorter than the habituating stimulus. The results suggest that although mitral/tufted cells and aPCX neurons have roughly similar odor receptive fields, aPCX neurons have significantly better odor discrimination within their receptive field. The results have important implications for understanding the underlying bases of receptive fields in olfactory system neurons and the mechanisms of odor discrimination and memory.
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Affiliation(s)
- D A Wilson
- Department of Zoology, University of Oklahoma, Norman, Oklahoma 73019, USA.
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