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Number Cited by Other Article(s)
1
Yang S, Mahmood M, Baral R, Wu H, Almloff M, Stanton LE, Min D, Smiley BK, Iiams JC, Yu J, Im J. Forage conservation is a neglected nitrous oxide source. PNAS NEXUS 2024;3:pgae373. [PMID: 39351542 PMCID: PMC11440176 DOI: 10.1093/pnasnexus/pgae373] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 08/10/2024] [Indexed: 10/04/2024]
2
Roca-Couso R, Flores-Félix JD, Deb S, Giagnoni L, Tondello A, Stevanato P, Squartini A, García-Fraile P, Rivas R. Metataxonomic analysis of endophytic bacteria of blackberry (Rubus ulmifolius Schott) across tissues and environmental conditions. Sci Rep 2024;14:13388. [PMID: 38862607 PMCID: PMC11166949 DOI: 10.1038/s41598-024-64248-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2024] [Accepted: 06/06/2024] [Indexed: 06/13/2024]  Open
3
Yang S, Lee J, Mahmood M, Min D, Im J. Evaluation and optimization of lysis method for microbial DNA extraction from epiphytic phyllosphere samples. J Microbiol Methods 2023;206:106677. [PMID: 36716930 DOI: 10.1016/j.mimet.2023.106677] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/20/2023] [Accepted: 01/20/2023] [Indexed: 01/29/2023]
4
Farooq B, Nazir A, Anjum S, Farooq M, Farooq MU. Diversity of various symbiotic associations between microbes and host plants. RHIZOBIOME 2023:1-18. [DOI: 10.1016/b978-0-443-16030-1.00006-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/03/2025]
5
Ali M, Ali Q, Sohail MA, Ashraf MF, Saleem MH, Hussain S, Zhou L. Diversity and Taxonomic Distribution of Endophytic Bacterial Community in the Rice Plant and Its Prospective. Int J Mol Sci 2021;22:ijms221810165. [PMID: 34576331 PMCID: PMC8465699 DOI: 10.3390/ijms221810165] [Citation(s) in RCA: 25] [Impact Index Per Article: 6.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Revised: 09/06/2021] [Accepted: 09/16/2021] [Indexed: 11/16/2022]  Open
6
Plant beneficial endophytic bacteria: Mechanisms, diversity, host range and genetic determinants. Microbiol Res 2019;221:36-49. [DOI: 10.1016/j.micres.2019.02.001] [Citation(s) in RCA: 366] [Impact Index Per Article: 61.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/20/2018] [Revised: 12/11/2018] [Accepted: 02/01/2019] [Indexed: 12/13/2022]
7
Hayatsu M. A novel function of controlled-release nitrogen fertilizers. Microbes Environ 2017;29:121-2. [PMID: 25047661 PMCID: PMC4103517 DOI: 10.1264/jsme2.me2902rh] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
8
Kanno M, Constant P, Tamaki H, Kamagata Y. Detection and isolation of plant-associated bacteria scavenging atmospheric molecular hydrogen. Environ Microbiol 2016;18:2495-506. [PMID: 26636257 DOI: 10.1111/1462-2920.13162] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2015] [Revised: 11/21/2015] [Accepted: 11/27/2015] [Indexed: 11/28/2022]
9
Müller T, Ruppel S. Progress in cultivation-independent phyllosphere microbiology. FEMS Microbiol Ecol 2013;87:2-17. [PMID: 24003903 PMCID: PMC3906827 DOI: 10.1111/1574-6941.12198] [Citation(s) in RCA: 81] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2013] [Revised: 08/29/2013] [Accepted: 08/30/2013] [Indexed: 11/28/2022]  Open
10
Sasaki K, Ikeda S, Ohkubo T, Kisara C, Sato T, Minamisawa K. Effects of plant genotype and nitrogen level on bacterial communities in rice shoots and roots. Microbes Environ 2013;28:391-5. [PMID: 23979487 PMCID: PMC4070954 DOI: 10.1264/jsme2.me12212] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
11
Plant symbionts: keys to the phytosphere. Symbiosis 2012. [DOI: 10.1007/s13199-012-0190-2] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
12
Okabe S, Nakamura Y, Satoh H. Community structure and in situ activity of nitrifying bacteria in Phragmites root-associated biofilms. Microbes Environ 2012;27:242-9. [PMID: 22446303 PMCID: PMC4036055 DOI: 10.1264/jsme2.me11314] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
13
Dudeja SS, Giri R, Saini R, Suneja-Madan P, Kothe E. Interaction of endophytic microbes with legumes. J Basic Microbiol 2011;52:248-60. [DOI: 10.1002/jobm.201100063] [Citation(s) in RCA: 119] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/04/2011] [Accepted: 04/27/2011] [Indexed: 11/11/2022]
14
Sato A, Watanabe T, Unno Y, Purnomo E, Osaki M, Shinano T. Analysis of diversity of diazotrophic bacteria associated with the rhizosphere of a tropical Arbor, Melastoma malabathricum L. Microbes Environ 2011;24:81-7. [PMID: 21566359 DOI: 10.1264/jsme2.me08565] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
15
Okabe S, Oshiki M, Kamagata Y, Yamaguchi N, Toyofuku M, Yawata Y, Tashiro Y, Nomura N, Ohta H, Ohkuma M, Hiraishi A, Minamisawa K. A great leap forward in microbial ecology. Microbes Environ 2011;25:230-40. [PMID: 21576878 DOI: 10.1264/jsme2.me10178] [Citation(s) in RCA: 42] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
16
Isawa T, Yasuda M, Awazaki H, Minamisawa K, Shinozaki S, Nakashita H. Azospirillum sp. strain B510 enhances rice growth and yield. Microbes Environ 2011;25:58-61. [PMID: 21576855 DOI: 10.1264/jsme2.me09174] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
17
Inaba S, Tanabe K, Eda S, Ikeda S, Higashitani A, Mitsui H, Minamisawa K. Nitrous oxide emission and microbial community in the rhizosphere of nodulated soybeans during the late growth period. Microbes Environ 2011;24:64-7. [PMID: 21566356 DOI: 10.1264/jsme2.me08544] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
18
The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions. Appl Environ Microbiol 2011;77:4399-405. [PMID: 21551283 DOI: 10.1128/aem.00315-11] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
19
Anda M, Ikeda S, Eda S, Okubo T, Sato S, Tabata S, Mitsui H, Minamisawa K. Isolation and genetic characterization of Aurantimonas and Methylobacterium strains from stems of hypernodulated soybeans. Microbes Environ 2011;26:172-80. [PMID: 21512309 DOI: 10.1264/jsme2.me10203] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
20
Ikeda S, Anda M, Inaba S, Eda S, Sato S, Sasaki K, Tabata S, Mitsui H, Sato T, Shinano T, Minamisawa K. Autoregulation of nodulation interferes with impacts of nitrogen fertilization levels on the leaf-associated bacterial community in soybeans. Appl Environ Microbiol 2011;77:1973-80. [PMID: 21239540 PMCID: PMC3067336 DOI: 10.1128/aem.02567-10] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2010] [Accepted: 01/07/2011] [Indexed: 11/20/2022]  Open
21
Ikeda S, Okubo T, Anda M, Nakashita H, Yasuda M, Sato S, Kaneko T, Tabata S, Eda S, Momiyama A, Terasawa K, Mitsui H, Minamisawa K. Community- and genome-based views of plant-associated bacteria: plant-bacterial interactions in soybean and rice. PLANT & CELL PHYSIOLOGY 2010;51:1398-410. [PMID: 20685969 DOI: 10.1093/pcp/pcq119] [Citation(s) in RCA: 69] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
22
Kawaguchi M, Minamisawa K. Plant-microbe communications for symbiosis. PLANT & CELL PHYSIOLOGY 2010;51:1377-80. [PMID: 20841337 DOI: 10.1093/pcp/pcq125] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
23
Ikeda S, Okubo T, Kaneko T, Inaba S, Maekawa T, Eda S, Sato S, Tabata S, Mitsui H, Minamisawa K. Community shifts of soybean stem-associated bacteria responding to different nodulation phenotypes and N levels. THE ISME JOURNAL 2010;4:315-26. [PMID: 19924157 DOI: 10.1038/ismej.2009.119] [Citation(s) in RCA: 55] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
24
Kaneko T, Minamisawa K, Isawa T, Nakatsukasa H, Mitsui H, Kawaharada Y, Nakamura Y, Watanabe A, Kawashima K, Ono A, Shimizu Y, Takahashi C, Minami C, Fujishiro T, Kohara M, Katoh M, Nakazaki N, Nakayama S, Yamada M, Tabata S, Sato S. Complete genomic structure of the cultivated rice endophyte Azospirillum sp. B510. DNA Res 2010;17:37-50. [PMID: 20047946 PMCID: PMC2818188 DOI: 10.1093/dnares/dsp026] [Citation(s) in RCA: 72] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Ikeda S, Kaneko T, Okubo T, Rallos LEE, Eda S, Mitsui H, Sato S, Nakamura Y, Tabata S, Minamisawa K. Development of a bacterial cell enrichment method and its application to the community analysis in soybean stems. MICROBIAL ECOLOGY 2009;58:703-14. [PMID: 19662454 DOI: 10.1007/s00248-009-9566-0] [Citation(s) in RCA: 74] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2009] [Accepted: 07/06/2009] [Indexed: 05/06/2023]
26
Sudtachat N, Ito N, Itakura M, Masuda S, Eda S, Mitsui H, Kawaharada Y, Minamisawa K. Aerobic vanillate degradation and C1 compound metabolism in Bradyrhizobium japonicum. Appl Environ Microbiol 2009;75:5012-7. [PMID: 19502448 PMCID: PMC2725485 DOI: 10.1128/aem.00755-09] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2009] [Accepted: 05/27/2009] [Indexed: 11/20/2022]  Open
27
Ishii S, Kadota K, Senoo K. Application of a clustering-based peak alignment algorithm to analyze various DNA fingerprinting data. J Microbiol Methods 2009;78:344-50. [PMID: 19616587 DOI: 10.1016/j.mimet.2009.07.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2009] [Revised: 07/08/2009] [Accepted: 07/08/2009] [Indexed: 11/29/2022]
28
Kaga H, Mano H, Tanaka F, Watanabe A, Kaneko S, Morisaki H. Rice Seeds as Sources of Endophytic Bacteria. Microbes Environ 2009;24:154-62. [DOI: 10.1264/jsme2.me09113] [Citation(s) in RCA: 122] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
29
Okubo T, Ikeda S, Kaneko T, Eda S, Mitsui H, Sato S, Tabata S, Minamisawa K. Nodulation-Dependent Communities of Culturable Bacterial Endophytes from Stems of Field-Grown Soybeans. Microbes Environ 2009;24:253-8. [DOI: 10.1264/jsme2.me09125] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
30
Ikeda S, Rallos LEE, Okubo T, Eda S, Inaba S, Mitsui H, Minamisawa K. Microbial community analysis of field-grown soybeans with different nodulation phenotypes. Appl Environ Microbiol 2008;74:5704-9. [PMID: 18658280 PMCID: PMC2547038 DOI: 10.1128/aem.00833-08] [Citation(s) in RCA: 25] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2008] [Accepted: 07/14/2008] [Indexed: 11/20/2022]  Open
31
Saito A, Kawahara M, Ikeda S, Ishimine M, Akao S, Minamisawa K. Broad Distribution and Phylogeny of Anaerobic Endophytes of Cluster XIVa Clostridia in Plant Species Including Crops. Microbes Environ 2008;23:73-80. [DOI: 10.1264/jsme2.23.73] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
32
Huong NL, Itoh K, Suyama K. 2,4-Dichlorophenoxyacetic Acid (2,4-D)- and 2,4,5-Trichlorophenoxyacetic Acid (2,4,5-T)-Degrading Bacterial Community in Soil-Water Suspension during the Enrichment Process. Microbes Environ 2008;23:142-8. [DOI: 10.1264/jsme2.23.142] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
33
Suda W, Oto M, Amachi S, Shinoyama H, Shishido M. A Direct Method to Isolate DNA from Phyllosphere Microbial Communities without Disrupting Leaf Tissues. Microbes Environ 2008;23:248-52. [DOI: 10.1264/jsme2.23.248] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
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