Relative impacts of adult movement, larval dispersal and harvester movement on the effectiveness of reserve networks

Evidence to inform spatiotemporal management of a western Pacific Ocean tuna purse seine fishery

Fisheries can profoundly impact co-occurring species exposed to incidental capture. Spatiotemporal fisheries management holds substantial potential to balance socioeconomic benefits with ecological costs to threatened bycatch species. This study estimated the effect of the spatial and temporal distribution of effort by a western Pacific Ocean tuna purse seine fishery on catch rates of target and at-risk species by fitting spatially explicit generalized additive multilevel regression models within a Bayesian inference framework to observer data. Mean field prediction surfaces defined catch rate hotspots for tunas, silky sharks, rays, and whale sharks, informing the design of candidate area-based management strategies. Due to limited sample sizes, odontocete and marine turtle catch rate geospatial patterns were summarized using simple 2D hexagonal binning. Effort could be focused in two areas within core fishing grounds to reduce overlap with hotspots for silky sharks, rays, and whale sharks without affecting target catch. Effort could be shifted outside of core fishing areas to zones with higher target tuna catch rates to reduce overlap with hotspots for at-risk species. Sparse and small marine turtle and whale shark hotspots occurred across the fishing grounds. Results did not identify opportunities for temporally dynamic spatial management to balance target and at-risk catch rates. Research on the economic and operational viability of alternative spatial management strategies is a priority. A small subset of sets had disproportionately large odontocete captures. Real-time fleet communication, move-on rules, and avoiding sets on dolphin schools might reduce odontocete catch rates. Managing set association type and mesh size present additional opportunities to balance catch rates of at-risk and target species. Employing output controls that effectively constrain the fishery would alter the spatial management strategy to focus fishing within zones with the lowest ratio of at-risk bycatch to target tuna catch. Findings inform the design of alternative spatial management strategies to avoid catch rate hotspots of at-risk species without compromising the catch of principal market species.

Reading the biomineralized book of life: expanding otolith biogeochemical research and applications for fisheries and ecosystem-based management

Chemical analysis of calcified structures continues to flourish, as analytical and technological advances enable researchers to tap into trace elements and isotopes taken up in otoliths and other archival tissues at ever greater resolution. Increasingly, these tracers are applied to refine age estimation and interpretation, and to chronicle responses to environmental stressors, linking these to ecological, physiological, and life-history processes. Here, we review emerging approaches and innovative research directions in otolith chemistry, as well as in the chemistry of other archival tissues, outlining their value for fisheries and ecosystem-based management, turning the spotlight on areas where such biomarkers can support decision making. We summarise recent milestones and the challenges that lie ahead to using otoliths and archival tissues as biomarkers, grouped into seven, rapidly expanding and application-oriented research areas that apply chemical analysis in a variety of contexts, namely: (1) supporting fish age estimation; (2) evaluating environmental stress, ecophysiology and individual performance; (3) confirming seafood provenance; (4) resolving connectivity and movement pathways; (5) characterising food webs and trophic interactions; (6) reconstructing reproductive life histories; and (7) tracing stock enhancement efforts. Emerging research directions that apply hard part chemistry to combat seafood fraud, quantify past food webs, as well as to reconcile growth, movement, thermal, metabolic, stress and reproductive life-histories provide opportunities to examine how harvesting and global change impact fish health and fisheries productivity. Ultimately, improved appreciation of the many practical benefits of archival tissue chemistry to fisheries and ecosystem-based management will support their increased implementation into routine monitoring.

Graphical abstract

Seasonal distribution of fish larvae in mangrove-seagrass seascapes of Zanzibar (Tanzania)

Fish larvae supply in nearshore vegetated habitats, such as seagrass meadows and mangroves, contributes significantly to sustainable fish stocks. Yet, little information is available on distribution patterns of fish larvae in mangrove and seagrass habitats of the western Indian Ocean. The present study investigated the abundance, diversity and assemblage composition of fish larvae in mangrove creeks, inshore seagrass meadows (located adjacent to mangroves) and nearshore seagrass meadows (located in-between mangroves and coral reefs) in two coastal seascapes of Zanzibar (Tanzania) across seasons for 1 year. The highest mean abundances of fish larvae were recorded in mangrove creeks, while nearshore- and inshore seagrass meadows showed similar mean abundance levels. Generally, fish larvae representing 42 families were identified, with the fourteen most abundant families comprising 83% of all specimens. Fish larvae communities were dominated by specimens of the postflexion growth stage in all habitats, except in mangrove creeks in one of the two seascapes (i.e. Chwaka Bay) from April through June when abundances of the preflexion and very small-sized individuals were exceptionally high. Slightly higher fish larvae abundances were observed in mangroves during the southeast monsoon compared to the northeast monsoon, and there were also differences across months within monsoon periods for all three habitats studied. Assemblage composition of larvae did, however, not vary significantly in time or space. Our findings suggest that mangroves and seagrass meadows are highly linked shallow-water habitats with high retention of fish larvae contributing to similarity in assemblage compositions across shallow coastal seascapes. Conservation and management efforts should prioritize connected shallow-water seascapes for protection of fish larvae and to uphold sustainable coastal fisheries.

Ecological responses to blue water MPAs

Marine protected areas (MPAs) can contribute to protecting biodiversity and managing ocean activities, including fishing. There is, however, limited evidence of ecological responses to blue water MPAs. We conducted the first comprehensive evaluation of impacts on fisheries production and ecological responses to pelagic MPAs of the Pacific Remote Islands Marine National Monument. A Bayesian time series-based counterfactual modelling approach using fishery-dependent data was used to compare the temporal response in the MPAs to three reference regions for standardized catch rates, lengths, trophic level of the catch and species diversity. Catch rates of bigeye tuna, the main target species (Kingman/Palmyra MPA, causal effect probability >99% of an 84% reduction; 95% credible interval: -143%, -25%), and blue shark (Johnston MPAs, causal effect probability >95%) were significantly lower and longnose lancetfish significantly higher (Johnston MPAs, causal effect probability >95%) than predicted had the MPAs not been established, possibly from closing areas near shallow features, which aggregate pelagic predators, and from ‘fishing-the-line’. There were no apparent causal impacts of the MPAs on species diversity, lengths and trophic level of the catch, perhaps because the MPAs were young, were too small, did not contain critical habitat for specific life-history stages, had been lightly exploited or experienced fishing-the-line. We also assessed model-standardized catch rates for species of conservation concern and mean trophic level of the catch within and outside of MPAs. Displaced effort produced multi-species conflicts: MPAs protect bycatch hotspots and hotspots of bycatch-to-target catch ratios for some at-risk species, but coldspots for others. Mean trophic level of the catch was significantly higher around MPAs, likely due to the aggregating effect of the shallow features and there having been light fishing pressure within MPAs. These findings demonstrate how exploring a wide range of ecological responses supports evidence-based evaluations of blue water MPAs.

An approach to incorporating inferred connectivity of adult movement into marine protected area design with limited data

Marine protected areas (MPAs) are important conservation tools that can support the resilience of marine ecosystems. Many countries, including Canada, have committed to protecting at least 10% of their marine areas under the Convention on Biological Diversity's Aichi Target 11, which includes connectivity as a key aspect. Connectivity, the movement of individuals among habitats, can enhance population stability and resilience within and among MPAs. However, little is known about regional spatial patterns of marine ecological connectivity, particularly adult movement. We developed a method to assess and design MPA networks that maximize inferred connectivity within habitat types for adult movement when ecological data are limited. We used the Northern Shelf Bioregion in British Columbia, Canada, to explore two different approaches: (1) evaluating sites important for inferred regional connectivity (termed hotspots) and (2) assessing MPA network configurations based on their overlap with connectivity hotspots and interconnectedness between MPAs. To assess inferred connectivity via adult movement, we used two different threshold distances (15 and 50 km) to capture moderate home ranges, which are most appropriate to consider in MPA design. We applied graph theory to assess inferred connectivity within 16 habitat and depth categories (proxies for distinct ecological communities), and used novel multiplex network methodologies to perform an aggregated assessment of inferred connectivity. We evaluated inferred regional connectivity hotspots based on betweenness and eigenvector centrality metrics, finding that the existing MPA network overlapped a moderate proportion of these regional hotspots and identified key areas to be considered as candidate MPAs. Network density among existing MPAs was low within the individual habitat networks, as well as the multiplex. This work informs an ongoing MPA planning process, and approaches for incorporating connectivity into MPA design when data are limited, with lessons for other contexts.

Patterns of Fish Connectivity between a Marine Protected Area and Surrounding Fished Areas

Patterns of connectivity and self-recruitment are recognized as key factors shaping the dynamics of marine populations. Connectivity is also essential for maintaining and restoring natural ecological processes with genetic diversity contributing to the adaptation and persistence of any species in the face of global disturbances. Estimates of connectivity are crucial to inform the design of both marine protected areas (MPAs) and MPA networks. Among several approaches, genetic structure is frequently used as a proxy for patterns of connectivity. Using 8 microsatellite loci, we investigated genetic structure of the two-banded sea bream Diplodus vulgaris, a coastal fish that is both commercially and ecologically important. Adults were sampled in 7 locations (stretches of coastline approximately 8 km long) and juveniles in 14 sites (~100 to 200 m of coastline) along 200 km of the Apulian Adriatic coast (SW Adriatic Sea), within and outside an MPA (Torre Guaceto MPA, Italy). Our study found similar genetic diversity indices for both the MPA and the surrounding fished areas. An overall lack of genetic structure among samples suggests high gene flow (i.e. connectivity) across a scale of at least 200 km. However, some local genetic divergences found in two locations demonstrate some heterogeneity in processes renewing the population along the Apulian Adriatic coast. Furthermore, two sites appeared genetically divergent, reinforcing our observations within the genetic makeup of adults and confirming heterogeneity in early stage genetics that can come from either different supply populations or from chaotic genetic patchiness occurring under temporal variation in recruitment and in the reproductive success. While the specific role of the MPA is not entirely known in this case, these results confirm the presence of regional processes and the key role of connectivity in maintaining the local population supply.

The good, the bad and the ugly of marine reserves for fishery yields

Marine reserves (MRs) are used worldwide as a means of conserving biodiversity and protecting depleted populations. Despite major investments in MRs, their environmental and social benefits have proven difficult to demonstrate and are still debated. Clear expectations of the possible outcomes of MR establishment are needed to guide and strengthen empirical assessments. Previous models show that reserve establishment in overcapitalized, quota-based fisheries can reduce both catch and population abundance, thereby negating fisheries and even conservation benefits. By using a stage-structured, spatially explicit stochastic model, we show that catches under quota-based fisheries that include a network of MRs can exceed maximum sustainable yield (MSY) under conventional quota management if reserves provide protection to old, large spawners that disproportionally contribute to recruitment outside the reserves. Modelling results predict that the net fishery benefit of MRs is lost when gains in fecundity of old, large individuals are small, is highest in the case of sedentary adults with high larval dispersal, and decreases with adult mobility. We also show that environmental variability may mask fishery benefits of reserve implementation and that MRs may buffer against collapse when sustainable catch quotas are exceeded owing to stock overestimation or systematic overfishing.

Fishery consequences of marine reserves: short-term pain for longer-term gain

Marine reserves are often established in areas that support fisheries. Larval export from reserves is argued to help compensate for the loss of fishable habitat; however, previous modeling studies have focused on long-term equilibrium outcomes. We examined the transient consequences of reserve establishment for fished metapopulations, considering both a well-mixed larval pool and a spatially explicit model based on a coral trout (Plectropomus spp.) metapopulation. When fishing pressure was reallocated relative to the area protected, yields decreased initially, then recovered, and ultimately exceeded pre-reserve levels. However, recovery time was on the order of several years to decades. If fishing pressure intensified to maintain pre-reserve yields, reserves were sometimes unable to support the increased mortality and the metapopulation collapsed. This was more likely when reserves were small, or located peripherally within the metapopulation. Overall, reserves can achieve positive conservation and fishery benefits, but fisheries management complementary to reserve implementation is essential.

Fish attraction to artificial reefs not always harmful: a simulation study

The debate on whether artificial reefs produce new fish or simply attract existing fish biomass continues due to the difficulty in distinguishing these processes, and there remains considerable doubt as to whether artificial reefs are a harmful form of habitat modification. The harm typically associated with attraction is that fish will be easier to harvest due to the existing biomass aggregating at a newly deployed reef. This outcome of fish attraction has not progressed past an anecdotal form, however, and is always perceived as a harmful process. We present a numerical model that simulates the effect that a redistributed fish biomass, due to an artificial reef, has on fishing catch per unit effort (CPUE). This model can be used to identify the scenarios (in terms of reef, fish, and harvest characteristics) that pose the most risk of exploitation due to fish attraction. The properties of this model were compared to the long-standing predictions by Bohnsack (1989) on the factors that increase the risk or the harm of attraction. Simulations revealed that attraction is not always harmful because it does not always increase maximum fish density. Rather, attraction sometimes disperses existing fish biomass making them harder to catch. Some attraction can be ideal, with CPUE lowest when attraction leads to an equal distribution of biomass between natural and artificial reefs. Simulations also showed that the outcomes from attraction depend on the characteristics of the target fish species, such that transient or pelagic species are often at more risk of harmful attraction than resident species. Our findings generally agree with Bohnsack's predictions, although we recommend distinguishing "mobility" and "fidelity" when identifying species most at risk from attraction, as these traits had great influence on patterns of harvest of attracted fish biomass.

Beyond connectivity: how empirical methods can quantify population persistence to improve marine protected-area design

Demographic connectivity is a fundamental process influencing the dynamics and persistence of spatially structured populations. Consequently, quantifying connectivity is essential for properly designing networks of protected areas so that they achieve their core ecological objective of maintaining population persistence. Recently, many empirical studies in marine systems have provided essential, and historically challenging to obtain, data on patterns of larval dispersal and export from marine protected areas (MPAs). Here, we review the empirical studies that have directly quantified the origins and destinations of individual larvae and assess those studies' relevance to the theory of population persistence and MPA design objectives. We found that empirical studies often do not measure or present quantities that are relevant to assessing population persistence, even though most studies were motivated or contextualized by MPA applications. Persistence of spatial populations, like nonspatial populations, depends on replacement, whether individuals reproduce enough in their lifetime to replace themselves. In spatial populations, one needs to account for the effect of larval dispersal on future recruitment back to the local population through local retention and other connectivity pathways. The most commonly reported descriptor of larval dispersal was the fraction of recruitment from local origin (self-recruitment). Self-recruitment does not inform persistence-based MPA design because it is a fraction of those arriving, not a fraction of those leaving (local retention), so contains no information on replacement. Some studies presented connectivity matrices, which can inform assessments of persistence with additional knowledge of survival and fecundity after recruitment. Some studies collected data in addition to larval dispersal that could inform assessments of population persistence but which were not presented in that way. We describe how three pieces of empirical information are needed to fully describe population persistence in a network of MPAs: (1) lifetime fecundity, (2) the proportion of larvae that are locally retained (or the full connectivity matrix), and (3) survival rate after recruitment. We conclude by linking theory and data to provide detailed guidance to empiricists and practitioners on field sampling design and data presentation that better informs the MPA objective of population persistence.

SMART: a spatially explicit bio-economic model for assessing and managing demersal fisheries, with an application to italian trawlers in the strait of sicily

Management of catches, effort and exploitation pattern are considered the most effective measures to control fishing mortality and ultimately ensure productivity and sustainability of fisheries. Despite the growing concerns about the spatial dimension of fisheries, the distribution of resources and fishing effort in space is seldom considered in assessment and management processes. Here we propose SMART (Spatial MAnagement of demersal Resources for Trawl fisheries), a tool for assessing bio-economic feedback in different management scenarios. SMART combines information from different tasks gathered within the European Data Collection Framework on fisheries and is composed of: 1) spatial models of fishing effort, environmental characteristics and distribution of demersal resources; 2) an Artificial Neural Network which captures the relationships among these aspects in a spatially explicit way and uses them to predict resources abundances; 3) a deterministic module which analyzes the size structure of catches and the associated revenues, according to different spatially-based management scenarios. SMART is applied to demersal fishery in the Strait of Sicily, one of the most productive fisheries of the Mediterranean Sea. Three of the main target species are used as proxies for the whole range exploited by trawlers. After training, SMART is used to evaluate different management scenarios, including spatial closures, using a simulation approach that mimics the recent exploitation patterns. Results evidence good model performance, with a noteworthy coherence and reliability of outputs for the different components. Among others, the main finding is that a partial improvement in resource conditions can be achieved by means of nursery closures, even if the overall fishing effort in the area remains stable. Accordingly, a series of strategically designed areas of trawling closures could significantly improve the resource conditions of demersal fisheries in the Strait of Sicily, also supporting sustainable economic returns for fishermen if not applied simultaneously for different species.

Discordant patterns of genetic connectivity between two sympatric species, Mullus barbatus (Linnaeus, 1758) and Mullus surmuletus (Linnaeus, 1758), in south-western Mediterranean Sea

Population connectivity scales are important tools to achieve a mechanistic understanding of the factors regulating the abundance and distribution of marine populations and therefore support conservation actions to manage fisheries and stocks. We used 10 microsatellites markers on mullets' samples across the Spanish coast to determine the spatial scale of gene flow as well as the origin of post-larvae caught inside two MPAs. Population structure varied from complete homogeneity for Mullus barbatus, to high spatial variability in Mullus surmuletus samples. Differential habitat utilization by species, geomorphological features and oceanographic patterns are discussed as potential causes of patterns observed. Although we were unable to verify the origin of most post-larvae caught inside MPAs we suggest that they may act as genetic reservoirs due to high heterozigosity levels found in adult specimens inside (M. surmuletus) and nearby (both) them. Our results indicate that early life history traits (i.e. larvae) may not be the only determinant on species dispersal capability, suggesting that other mechanisms such as fine scale adult or juvenile movement may have been underestimated as promoting population connectivity.

Low connectivity between Mediterranean marine protected areas: a biophysical modeling approach for the dusky grouper Epinephelus marginatus

Marine protected areas (MPAs) are major tools to protect biodiversity and sustain fisheries. For species with a sedentary adult phase and a dispersive larval phase, the effectiveness of MPA networks for population persistence depends on connectivity through larval dispersal. However, connectivity patterns between MPAs remain largely unknown at large spatial scales. Here, we used a biophysical model to evaluate connectivity between MPAs in the Mediterranean Sea, a region of extremely rich biodiversity that is currently protected by a system of approximately a hundred MPAs. The model was parameterized according to the dispersal capacity of the dusky grouper Epinephelus marginatus, an archetypal conservation-dependent species, with high economic importance and emblematic in the Mediterranean. Using various connectivity metrics and graph theory, we showed that Mediterranean MPAs are far from constituting a true, well-connected network. On average, each MPA was directly connected to four others and MPAs were clustered into several groups. Two MPAs (one in the Balearic Islands and one in Sardinia) emerged as crucial nodes for ensuring multi-generational connectivity. The high heterogeneity of MPA distribution, with low density in the South-Eastern Mediterranean, coupled with a mean dispersal distance of 120 km, leaves about 20% of the continental shelf without any larval supply. This low connectivity, here demonstrated for a major Mediterranean species, poses new challenges for the creation of a future Mediterranean network of well-connected MPAs providing recruitment to the whole continental shelf. This issue is even more critical given that the expected reduction of pelagic larval duration following sea temperature rise will likely decrease connectivity even more.