Satellite tracking of sympatric marine megafauna can inform the biological basis for species co-management

Challenges in small cetacean telemetry: an attempt at developing a remotely deployed attachment device for single-pin dorsal fin satellite transmitters

Satellite telemetry is critical for collecting fine-scale temporal and spatial data on individual animals that has broad-scale applicability at population and species levels. There have been significant advances in the remote deployment of satellite telemetry devices on large cetacean species. However, the development of comparable remote attachment methodologies for small cetaceans is still limited. Currently, satellite tag attachment for small cetaceans requires manual capture that increases the risk to the target animal, can be logistically challenging, and cost prohibitive. The goal of this project was to develop a novel tool to remotely attach single-pin satellite telemetry devices to the dorsal fin of individual small cetaceans. Three different spring-loaded designs and one pneumatic version of the remote attachment device were built in an iterative process to identify a successful deployment methodology. Ultimately, as a result of logistical challenges associated with a Category 5 hurricane, the COVID-19 pandemic, and engineering complexities related to dorsal fin morphology and small cetacean behavior, the objective of this project was not met. However, lessons learned from these attempts to develop this new sampling tool have applicability for future researchers in the successful completion of a safe and effective methodology for remote attachment of satellite tags to small cetacean dorsal fins.

Ecoregional and temporal dynamics of dugong habitat use in a complex coral reef lagoon ecosystem

Mobile marine species display complex and nonstationary habitat use patterns that require understanding to design effective management measures. In this study, the spatio-temporal habitat use dynamics of the vulnerable dugong (Dugong dugon) were modelled from 16 satellite-tagged individuals in the coral reef lagoonal ecosystems of New Caledonia, South Pacific. Dugong residence time was calculated along the interpolated tracks (9371 hourly positions) to estimate intensity of use in three contrasting ecoregions, previously identified through hierarchical clustering of lagoon topographic characteristics. Across ecoregions, differences were identified in dugong spatial intensity of use of shallow waters, deeper lagoon waters and the fore-reef shelf outside the barrier reef. Maps of dugong intensity of use were predicted from these ecological relationships and validated with spatial density estimates derived from aerial surveys conducted for population assessment. While high correlation was found between the two datasets, our study extended the spatial patterns of dugong distribution obtained from aerial surveys across the diel cycle, especially in shallow waters preferentially used by dugongs at night/dusk during high tide. This study has important implications for dugong conservation and illustrates the potential benefits of satellite tracking and dynamic habitat use modelling to inform spatial management of elusive and mobile marine mammals.

Habitat selection by vulnerable golden bandicoots in the arid zone

In 2010, vulnerable golden bandicoots (Isoodon auratus) were translocated from Barrow Island, Western Australia, to a mainland predator-free enclosure on the Matuwa Indigenous Protected Area. Golden bandicoots were once widespread throughout a variety of arid and semiarid habitats of central and northern Australia. Like many small-to-medium-sized marsupials, the species has severely declined since colonization and has been reduced to only four remnant natural populations. Between 2010 and 2020, the reintroduced population of golden bandicoots on Matuwa was monitored via capture-mark-recapture data collection, which was used in spatially explicit capture-recapture analysis to monitor their abundance over time. In 2014, we used VHF transmitters to examine the home range and habitat selection of 20 golden bandicoots in the enclosure over a six-week period. We used compositional analysis to compare the use of four habitat types. Golden bandicoot abundance in the enclosure slowly increased between 2010 and 2014 and has since plateaued at approximately one quarter of the density observed in the founding population on Barrow Island. The population may have plateaued because some bandicoots escape through the fence. Golden bandicoots used habitats dominated by scattered shrubland with spinifex grass more than expected given the habitat's availability. Nocturnal foraging range was influenced by sex and trapping location, whereas diurnal refuge habitat, which was typically under a spinifex hummock with minimal overstory vegetation, was consistent across sex and trapping location. Our work suggests that diurnal refuge habitat may be an important factor for the success of proposed translocations of golden bandicoots.

Epibionts Reflect Spatial and Foraging Ecology of Gulf of Mexico Loggerhead Turtles (Caretta caretta)

Sea turtles are exposed to numerous threats during migrations to their foraging grounds and at those locations. Therefore, information on sea turtle foraging and spatial ecology can guide conservation initiatives, yet it is difficult to directly observe migrating or foraging turtles. To gain insights into the foraging and spatial ecology of turtles, studies have increasingly analyzed epibionts of nesting turtles, as epibionts must overlap spatially and ecologically with their hosts to colonize successfully. Epibiont analysis may be integrated with stable isotope information to identify taxa that can serve as indicators of sea turtle foraging and spatial ecology, but few studies have pursued this. To determine if epibionts can serve as indicators of foraging and spatial ecology of loggerhead turtles nesting in the northern Gulf of Mexico we combined turtle stable isotope and taxonomic epibiont analysis. We sampled 22 individual turtles and identified over 120,000 epibiont individuals, belonging to 34 macrofauna taxa (>1 mm) and 22 meiofauna taxa (63 μm–1 mm), including 111 nematode genera. We quantified epidermis δ13C and δ15N, and used these to assign loggerhead turtles to broad foraging regions. The abundance and presence of macrofauna and nematodes did not differ between inferred foraging regions, but the presence of select meiofauna taxa differentiated between three inferred foraging regions. Further, dissimilarities in macrofauna, meiofauna, and nematode assemblages corresponded to dissimilarities in individual stable isotope values within inferred foraging regions. This suggests that certain epibiont taxa may be indicative of foraging regions used by loggerhead turtles in the Gulf of Mexico, and of individual turtle foraging and habitat use specialization within foraging regions. Continued sampling of epibionts at nesting beaches and foraging grounds in the Gulf of Mexico and globally, coupled with satellite telemetry and/or dietary studies, can expand upon our findings to develop epibionts as efficient indicators of sea turtle foraging and spatial ecology.

Dugong (Dugong dugon) movements and habitat use in a coral reef lagoonal ecosystem

Little is known about how the Vulnerable dugong Dugong dugon uses coral reef lagoons despite the importance of these habitats throughout much of its vast range. We used GPS satellite tracking systems to explore the space use of 12 dugongs at 3 locations in the coral reef lagoons of the main island of New Caledonia in the southwest Pacific: Cap Goulvain, Ouano and Nouméa. The movements of the tracked dugongs varied among individuals and all except one animal undertook large-scale movements (>15 km; mean [±SE] 37.7 ± 5.2 km) from their capture location (maximum waterway distance range: 13.8 to 72.9 km). The straight-line distances between the furthest GPS locations during each animal’s tracking period ranged from 21.3 to 74.5 km. We identified areas used intensively by dugongs in all 3 study areas, some of which were areas where seagrass presence has not been verified, or where dugongs have not been observed during past aerial surveys. Dugongs spent most of their tracking time within the lagoons, with 99.4% of GPS locations found inside the barrier reef. Nonetheless, where the lagoon was narrow and confined, 3 tracked dugongs used the fore reef shelf outside the barrier reef in the open ocean to commute between bays. Our findings can inform conservation and management initiatives in New Caledonia as well as other countries within the dugong’s range which have similar habitat geomorphology but where dugongs occur in numbers too low to be tracked and are considered Critically Endangered.

Effects of a power plant closure on home ranges of green turtles in an urban foraging area

A natural experiment was conducted to determine effects of a fossil-fueled power plant on home ranges of east Pacific green turtles Chelonia mydas in an urban foraging ground. The power plant, located in south San Diego Bay, California, USA, co-existed with a resident foraging aggregation of ~60 green turtles for ~50 yr. It was decommissioned during a long-term green turtle monitoring study, thus providing a rare opportunity to evaluate how the cessation of warm-water effluent affected turtle movements and habitat use in the area. During pre- and post-decommissioning of the power plant, 7 and 23 green turtles, respectively, were equipped with GPS-enabled satellite transmitters. Useful data were obtained from 17 turtles (4 for pre- and 13 for post-decommissioning). Core use areas (50% utilization distribution [UD]) increased from 0.71 to 1.37 km2 after the power plant decommissioning. Increase in post-power plant 50% UD was greater during nighttime (0.52 to 1.44 km2) than daytime (1.32 to 1.43 km2). Furthermore, UDs moved from the effluent channel to an area closer to seagrass pastures, a presumed foraging habitat of the turtles. The observed expansion of green turtle home ranges may increase turtle-human interactions, such as boat strikes, within the foraging ground; this underscores how seemingly innocuous human actions contribute to inadvertent consequences to wildlife. Possible management and conservation actions include increasing awareness of the public regarding turtle presence in the area through signage and education as well as legislating for a reduction in boat speeds in select areas of the bay.

Seasonal metabolic analysis of marine sediments collected from Moreton Bay in South East Queensland, Australia, using a multi-omics-based approach

Anthropogenic effects of urban density have altered natural ecosystems. Such changes include eutrophication of freshwater and adjoining coastal habitats, and increased levels of inorganic nutrients and pollutants into waterways. In Australia, these changes are intensified by large-scale ocean-atmospheric events, leading to considerable abiotic stress on the natural flora and fauna. Bacterial communities in marine sediments from Moreton Bay (South East Queensland, Australia) were examined in order to assess the impact of rainfall changes, chemical pollution, and subsequent abiotic stress on living organisms within a marine ecosystem. Sediments were collected during the wet and dry seasons and analyzed using bacterial metagenomics and community metabolomics techniques. Physicochemical data were also analyzed to account for biological variance that may be due to non-rainfall-based abiotic stresses. Wet-dry seasonality was the dominant control on bacterial community structure and metabolic function. Changes in the availability of nutrients, organic matter and light appeared to be the major seasonal stressors. In contrast, urban and industrial pollutants appeared to be minor stressors at the sites sampled. During the wet season, the bacterial community composition reflected organisms that utilize biogeochemical pathways with fast kinetics, such as aerobic metabolism, direct assimilation of inorganic compounds, and primary production. The transition to the dry season saw the bacterial community composition shift towards organisms that utilize more complex organic energy sources, such as carbohydrates and fatty acids, and anaerobic redox processes.

Inter-nesting movements and habitat-use of adult female Kemp's ridley turtles in the Gulf of Mexico

Species vulnerability is increased when individuals congregate in restricted areas for breeding; yet, breeding habitats are not well defined for many marine species. Identification and quantification of these breeding habitats are essential to effective conservation. Satellite telemetry and switching state-space modeling (SSM) were used to define inter-nesting habitat of endangered Kemp’s ridley turtles (Lepidochelys kempii) in the Gulf of Mexico. Turtles were outfitted with satellite transmitters after nesting at Padre Island National Seashore, Texas, USA, from 1998 through 2013 (n = 60); Rancho Nuevo, Tamaulipas, Mexico, during 2010 and 2011 (n = 11); and Tecolutla, Veracruz, Mexico, during 2012 and 2013 (n = 11). These sites span the range of nearly all nesting by this species. Inter-nesting habitat lies in a narrow band of nearshore western Gulf of Mexico waters in the USA and Mexico, with mean water depth of 14 to 19 m within a mean distance to shore of 6 to 11 km as estimated by 50% kernel density estimate, α-Hull, and minimum convex polygon methodologies. Turtles tracked during the inter-nesting period moved, on average, 17.5 km/day and a mean total distance of 398 km. Mean home ranges occupied were 725 to 2948 km². Our results indicate that these nearshore western Gulf waters represent critical inter-nesting habitat for this species, where threats such as shrimp trawling and oil and gas platforms also occur. Up to half of all adult female Kemp’s ridleys occupy this habitat for weeks to months during each nesting season. Because inter-nesting habitat for this species is concentrated in nearshore waters of the western Gulf of Mexico in both Mexico and the USA, international collaboration is needed to protect this essential habitat and the turtles occurring within it.

Occurrence and use of an estuarine habitat by giant manta ray Manta birostris

Based on the knowledge of local artisanal fishermen and on direct observations, this study presents evidence that the giant manta ray Manta birostris uses the Paranaguá estuarine complex in south Brazil, south-western Atlantic Ocean, in a predictable seasonal pattern. Behavioural observations suggest that the estuary can act as a nursery ground for M. birostris during the summer.