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For: Pironti A, Pfeifer N, Walter H, Jensen BEO, Zazzi M, Gomes P, Kaiser R, Lengauer T. Using drug exposure for predicting drug resistance - A data-driven genotypic interpretation tool. PLoS One 2017;12:e0174992. [PMID: 28394945 PMCID: PMC5386274 DOI: 10.1371/journal.pone.0174992] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2016] [Accepted: 03/17/2017] [Indexed: 01/31/2023]  Open
Number Cited by Other Article(s)
1
Arslan N, Eggeling R, Reuter B, Van Leathem K, Pingarilho M, Gomes P, Sönnerborg A, Kaiser R, Zazzi M, Pfeifer N. HIV multidrug class resistance prediction with a time sliding anchor approach. BIOINFORMATICS ADVANCES 2025;5:vbaf099. [PMID: 40421422 PMCID: PMC12104520 DOI: 10.1093/bioadv/vbaf099] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/31/2025] [Revised: 04/16/2025] [Accepted: 04/25/2025] [Indexed: 05/28/2025]
2
Di Teodoro G, Siciliano F, Guarrasi V, Vandamme AM, Ghisetti V, Sönnerborg A, Zazzi M, Silvestri F, Palagi L. A graph neural network-based model with out-of-distribution robustness for enhancing antiretroviral therapy outcome prediction for HIV-1. Comput Med Imaging Graph 2025;120:102484. [PMID: 39808870 DOI: 10.1016/j.compmedimag.2024.102484] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2024] [Revised: 11/16/2024] [Accepted: 12/23/2024] [Indexed: 01/16/2025]
3
Mercadal-Orfila G, Serrano López de las Hazas J, Riera-Jaume M, Herrera-Perez S. Developing a Prototype Machine Learning Model to Predict Quality of Life Measures in People Living With HIV. INTEGRATED PHARMACY RESEARCH AND PRACTICE 2025;14:1-16. [PMID: 39872224 PMCID: PMC11766232 DOI: 10.2147/iprp.s492422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2024] [Accepted: 01/14/2025] [Indexed: 01/30/2025]  Open
4
Di Teodoro G, Pirkl M, Incardona F, Vicenti I, Sönnerborg A, Kaiser R, Palagi L, Zazzi M, Lengauer T. Incorporating temporal dynamics of mutations to enhance the prediction capability of antiretroviral therapy's outcome for HIV-1. Bioinformatics 2024;40:btae327. [PMID: 38775719 PMCID: PMC11153833 DOI: 10.1093/bioinformatics/btae327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2023] [Revised: 05/10/2024] [Accepted: 05/20/2024] [Indexed: 06/07/2024]  Open
5
Paremskaia AI, Rudik AV, Filimonov DA, Lagunin AA, Poroikov VV, Tarasova OA. Web Service for HIV Drug Resistance Prediction Based on Analysis of Amino Acid Substitutions in Main Drug Targets. Viruses 2023;15:2245. [PMID: 38005921 PMCID: PMC10674809 DOI: 10.3390/v15112245] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2023] [Revised: 10/30/2023] [Accepted: 11/06/2023] [Indexed: 11/26/2023]  Open
6
Tarasova O, Rudik A, Kireev D, Poroikov V. RHIVDB: A Freely Accessible Database of HIV Amino Acid Sequences and Clinical Data of Infected Patients. Front Genet 2021;12:679029. [PMID: 34178036 PMCID: PMC8222909 DOI: 10.3389/fgene.2021.679029] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/10/2021] [Accepted: 05/14/2021] [Indexed: 11/13/2022]  Open
7
Tarasova O, Poroikov V. Machine Learning in Discovery of New Antivirals and Optimization of Viral Infections Therapy. Curr Med Chem 2021;28:7840-7861. [PMID: 33949929 DOI: 10.2174/0929867328666210504114351] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2020] [Revised: 02/13/2021] [Accepted: 02/24/2021] [Indexed: 11/22/2022]
8
Tarasova O, Biziukova N, Kireev D, Lagunin A, Ivanov S, Filimonov D, Poroikov V. A Computational Approach for the Prediction of Treatment History and the Effectiveness or Failure of Antiretroviral Therapy. Int J Mol Sci 2020;21:ijms21030748. [PMID: 31979356 PMCID: PMC7037494 DOI: 10.3390/ijms21030748] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2019] [Revised: 01/20/2020] [Accepted: 01/21/2020] [Indexed: 02/01/2023]  Open
9
Capetti A, Rizzardini G. Choosing appropriate pharmacotherapy for drug-resistant HIV. Expert Opin Pharmacother 2019;20:667-678. [DOI: 10.1080/14656566.2019.1570131] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
10
Döring M, Büch J, Friedrich G, Pironti A, Kalaghatgi P, Knops E, Heger E, Obermeier M, Däumer M, Thielen A, Kaiser R, Lengauer T, Pfeifer N. geno2pheno[ngs-freq]: a genotypic interpretation system for identifying viral drug resistance using next-generation sequencing data. Nucleic Acids Res 2018;46:W271-W277. [PMID: 29718426 PMCID: PMC6031006 DOI: 10.1093/nar/gky349] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2018] [Revised: 04/13/2018] [Accepted: 04/24/2018] [Indexed: 01/29/2023]  Open
11
Herbert S, Chung E. Clinical round-up. Sex Transm Infect 2017. [DOI: 10.1136/sextrans-2017-053404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]  Open
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