Generalizing soil properties in geographic space: Approaches used and ways forward

Construction and characterisation of a structured, tuneable, and transparent 3D culture platform for soil bacteria

We have developed a tuneable workflow for the study of soil microbes in an imitative 3D soil environment that is compatible with routine and advanced optical imaging, is chemically customisable, and is reliably refractive index matched based on the carbon catabolism of the study organism. We demonstrate our transparent soil pipeline with two representative soil organisms, Bacillus subtilis and Streptomyces coelicolor, and visualise their colonisation behaviours using fluorescence microscopy and mesoscopy. This spatially structured, 3D approach to microbial culture has the potential to further study the behaviour of bacteria in conditions matching their native environment and could be expanded to study microbial interactions, such as competition and warfare.

Predicting spatial patterns of soil bacteria under current and future environmental conditions

Soil bacteria are largely missing from future biodiversity assessments hindering comprehensive forecasts of ecosystem changes. Soil bacterial communities are expected to be more strongly driven by pH and less by other edaphic and climatic factors. Thus, alkalinisation or acidification along with climate change may influence soil bacteria, with subsequent influences for example on nutrient cycling and vegetation. Future forecasts of soil bacteria are therefore needed. We applied species distribution modelling (SDM) to quantify the roles of environmental factors in governing spatial abundance distribution of soil bacterial OTUs and to predict how future changes in these factors may change bacterial communities in a temperate mountain area. Models indicated that factors related to soil (especially pH), climate and/or topography explain and predict part of the abundance distribution of most OTUs. This supports the expectations that microorganisms have specific environmental requirements (i.e., niches/envelopes) and that they should accordingly respond to environmental changes. Our predictions indicate a stronger role of pH over other predictors (e.g. climate) in governing distributions of bacteria, yet the predicted future changes in bacteria communities are smaller than their current variation across space. The extent of bacterial community change predictions varies as a function of elevation, but in general, deviations from neutral soil pH are expected to decrease abundances and diversity of bacteria. Our findings highlight the need to account for edaphic changes, along with climate changes, in future forecasts of soil bacteria.

Mapping lead concentrations in urban topsoil using proximal and remote sensing data and hybrid statistical approaches

Due to rapid urbanization in China, lead (Pb) continues to accumulate in urban topsoil, resulting in soil degradation and increased public exposure. Mapping Pb concentrations in urban topsoil is therefore vital for the evaluation and control of this exposure risk. This study developed spatial models to map Pb concentrations in urban topsoil using proximal and remote sensing data. Proximal sensing reflectance spectra (350-2500 nm) of soils were pre-processed and used to calculate the principal components as landscape factors to represent the soil properties. Other landscape factors, including vegetation and land-use factors, were extracted from time-sequential Landsat images. Two hybrid statistical approaches, regression kriging (RK) and geographically weighted regression (GWR), were adopted to establish prediction models using the landscape factors. The results indicated that the use of landscape factors derived from combined remote and proximal sensing data improved the prediction of Pb concentrations compared with useing these data individually. GWR obtained better results than RK for predicting soil Pb concentration. Thus, joint proximal and remote sensing provides timely, easily accessible, and suitable data for extracting landscape factors.

Terrain Effects on the Spatial Variability of Soil Physical and Chemical Properties

Understanding topography effects on soil properties is vital to modelling landscape hydrology and establishing sustainable on-field management practices. This research focuses on an arable area (117 km2) in Southwestern Ethiopia where agricultural fields and bush cover are the dominant land uses. We postulate that adapting either of the soil data resources, coarse resolution FAO-UNESCO (Food and Agriculture Organization of the United Nations Educational, Scientific and Cultural Organization) soil data or pedo-transfer functions (PTFs) is not reliable to indicate future watershed management directions. The FAO-UNESCO data does not account for scale issues and assigns the same soil property at different landscape gradients. The PTFs, on the other hand, do not account for environmental effects and fail to provide all the required data. In this regard, mapping soil property spatial dynamics can help understand landscape physicochemical processes and corresponding land use changes. For this purpose, soil samples were collected across the watershed following a gridded sampling scheme. In areas with heterogeneous topography, soil is spatially variable as influenced by land use and slope. To understand the spatial variation, this research develops indicators, such as topographic index, soil topographic wetness index, elevation, aspect, and slope. Pearson correlation (r), among others, was used to investigate terrain effects on selected soil properties: organic matter (OM), available water content (AWC), sand content (%), clay content (%), silt content (%), electrical conductivity (EC), moist bulk density (MBD), and saturated hydraulic conductivity (Ksat). The results show that there were statistically significant correlations between elevation-based variables and soil physical properties. Among the variables considered, the ‘r’ value between topographic index and soil attributes (i.e., OM, EC, AWC, sand, clay, silt, and Ksat) were 0.66, 0.5, 0.7, 0.55, 0.62, 0.4, and 0.66, respectively. In conclusion, while understanding topography effects on soil properties is vital, implementing either FAO-UNESCO or PTFs soil data do not provide appropriate information pertaining to scale issues.