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Zhigailov AV, Perfilyeva YV, Ostapchuk YO, Kan SA, Lushova AV, Kuligin AV, Ivanova KR, Kuatbekova SA, Abdolla N, Naizabayeva DA, Maltseva ER, Berdygulova ZA, Mashzhan AS, Zima YA, Nizkorodova AS, Skiba YA, Mamadaliyev SM. Molecular and serological survey of bovine viral diarrhea virus infection in cattle in Kazakhstan. Res Vet Sci 2023; 162:104965. [PMID: 37516041 DOI: 10.1016/j.rvsc.2023.104965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2023] [Revised: 07/20/2023] [Accepted: 07/23/2023] [Indexed: 07/31/2023]
Abstract
The aim of this study was to estimate the occurrence of bovine viral diarrhea virus (BVDV) infection and to assess the population immunity in cattle vaccinated against BVDV in different regions of Kazakhstan. Cattle samples were collected in 12 oblasts (43 districts) of Kazakhstan. A total of 2477 cattle from 114 herds and 21 Bukhara deer (Cervus elaphus bactrianus) were examined by ELISA and conventional RT-PCR. Univariate and multivariate logistic regression analysis was performed to identify risk factors associated with BVDV infection in the country. In total, antibodies against BVDV were found in 79.3% (1965/2477) of all the animals and 92.1% (105/114) of all the herds examined. Seroprevalence in unvaccinated and vaccinated animals was 48.6% (447/920) and 98.7% (1391/1410), respectively. Seroprevalence in deer was 19.1% (4/21). The BVDV RNA was detected in six unvaccinated cattle (0.2%). Sequence analysis of the 5'-untranslated region demonstrated that four of the detected strains belonged to BVDV-1 and two strains to BVDV-2. Regression analysis revealed that age, production type, housing method, farm size, and geographic location were risk factors for BVDV infection in cattle in Kazakhstan. The present data confirm circulation of BVDV-1 and BVDV-2 in Kazakhstan and highlight the need to improve strategies for prevention and control of BVDV infection in the country.
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Affiliation(s)
- Andrey V Zhigailov
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Yuliya V Perfilyeva
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan.
| | - Yekaterina O Ostapchuk
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Sofiya A Kan
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Anzhelika V Lushova
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Artyom V Kuligin
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Karina R Ivanova
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan
| | | | - Nurshat Abdolla
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Dinara A Naizabayeva
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Elina R Maltseva
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan; Tethys Scientific Society, Almaty 050063, Kazakhstan
| | - Zhanna A Berdygulova
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan
| | - Akzhigit S Mashzhan
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; Al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | | | - Anna S Nizkorodova
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan
| | - Yuriy A Skiba
- Almaty Branch of the National Center for Biotechnology, Almaty 050054, Kazakhstan; M.A. Aitkhozhin Institute of Molecular Biology and Biochemistry, Almaty 050012, Kazakhstan; Tethys Scientific Society, Almaty 050063, Kazakhstan
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Smith MD, Leemaqz SY, Jankovic-Karasoulos T, McAninch D, McCullough D, Breen J, Roberts CT, Pillman KA. Haemolysis Detection in MicroRNA-Seq from Clinical Plasma Samples. Genes (Basel) 2022; 13:1288. [PMID: 35886071 PMCID: PMC9317737 DOI: 10.3390/genes13071288] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 06/23/2022] [Accepted: 07/01/2022] [Indexed: 11/22/2022] Open
Abstract
The abundance of cell-free microRNA (miRNA) has been measured in blood plasma and proposed as a source of novel, minimally invasive biomarkers for several diseases. Despite improvements in quantification methods, there is no consensus regarding how haemolysis affects plasma miRNA content. We propose a method for haemolysis detection in miRNA high-throughput sequencing (HTS) data from libraries prepared using human plasma. To establish a miRNA haemolysis signature we tested differential miRNA abundance between plasma samples with known haemolysis status. Using these miRNAs with statistically significant higher abundance in our haemolysed group, we further refined the set to reveal high-confidence haemolysis association. Given our specific context, i.e., women of reproductive age, we also tested for significant differences between pregnant and non-pregnant groups. We report a novel 20-miRNA signature used to identify the presence of haemolysis in silico in HTS miRNA-sequencing data. Further, we validated the signature set using firstly an all-male cohort (prostate cancer) and secondly a mixed male and female cohort (radiographic knee osteoarthritis). Conclusion: Given the potential for haemolysis contamination, we recommend that assays for haemolysis detection become standard pre-analytical practice and provide here a simple method for haemolysis detection.
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Affiliation(s)
- Melanie D. Smith
- Flinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia; (S.Y.L.); (T.J.-K.); (D.M.); (C.T.R.)
- Adelaide Medical School, University of Adelaide, Adelaide, SA 5000, Australia;
| | - Shalem Y. Leemaqz
- Flinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia; (S.Y.L.); (T.J.-K.); (D.M.); (C.T.R.)
| | - Tanja Jankovic-Karasoulos
- Flinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia; (S.Y.L.); (T.J.-K.); (D.M.); (C.T.R.)
| | - Dale McAninch
- Adelaide Medical School, University of Adelaide, Adelaide, SA 5000, Australia;
| | - Dylan McCullough
- Flinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia; (S.Y.L.); (T.J.-K.); (D.M.); (C.T.R.)
| | - James Breen
- Indigenous Genomics, Telethon Kids Institute, Adelaide, SA 5000, Australia;
- College of Health & Medicine, Australian National University, Canberra, ACT 2601, Australia
| | - Claire T. Roberts
- Flinders Health and Medical Research Institute, Flinders University, Bedford Park, SA 5042, Australia; (S.Y.L.); (T.J.-K.); (D.M.); (C.T.R.)
- Adelaide Medical School, University of Adelaide, Adelaide, SA 5000, Australia;
| | - Katherine A. Pillman
- Centre for Cancer Biology, University of South Australia/SA Pathology, Adelaide, SA 5000, Australia
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Zhirnov VV, Iakovenko IN. The osmotic resistance, and zeta potential responses of human erythrocytes to transmembrane modification of Ca2+ fluxes in the presence of the imposed low rate radiation field of 90Sr. Int J Radiat Biol 2014; 91:117-26. [PMID: 25084838 DOI: 10.3109/09553002.2014.950716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]
Abstract
PURPOSE To investigate the effects of the imposed low dose rate ionizing field on membrane stability of human erythrocytes under modulation of transmembrane exchange of Ca(2+). MATERIALS AND METHODS Osmotic resistance of human erythrocytes was determined by a measure of haemoglobin released from erythrocytes when placed in a medium containing serial dilutions of Krebs isotonic buffer. The zeta potential as indicator of surface membrane potential was calculated from value of the cellular electrophoretic mobility. The irradiation of erythrocyte suspensions carried out by applying suitable aliquots of (90)Sr in incubation media. RESULTS Irradiation of human erythrocytes by (90)Sr (1.5-15.0 μGy·h(-1)) induced a reversible increase of hyposmotic hemolysis and negative charge value on the outer membrane surface as well as changed responses these parameters to modification of Ca(2+) fluxes with calcimycin and nitrendipine. CONCLUSIONS Findings indicate that the low dose rate radionuclides ((90)Sr) field modifies both Ca(2+)-mediated, and Ca(2+)-independent cellular signalling regulating mechanical stability of erythrocyte membrane. A direction of that modification presumably depends on the initial structure of membranes, and it is determined by the quality and quantitative parameters of changes in membrane structure caused by concrete operable factors.
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Affiliation(s)
- Victor V Zhirnov
- Department of Cell Signal Systems, Institute of Bioorganic and Petroleum Chemistry, National Academy of Sciences of Ukraine , Kyiv , Ukraine
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Rojas C, Figueroa JV, Alvarado A, Mejia P, Mosqueda JJ, Falcon A, Vega CA, Alvarez A. Bovine Babesiosis Live Vaccine Production. Ann N Y Acad Sci 2006; 1081:405-16. [PMID: 17135544 DOI: 10.1196/annals.1373.059] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
Abstract
Gamma irradiation on bovine serum and red blood cells (RBC) allows proliferation and growth of in vitro-cultured Babesia sp., and has potential application to inactivate contaminating viruses and bacteria from the substrate. Gamma irradiation with 25 kGy in a source of (60)Co was able to inactivate infectious bovine rinotracheitis (IBR) and bovine viral diarrhea (BVD) viruses in artificially contaminated serum; besides, bacteria were also eliminated. In vitro culture of Babesia bovis (B. bovis) in modified substrate, by adding irradiated serum with (60)Co at 25 kGy was propagated from 24-well culture plates to 225 cm(2) tissue culture flasks, and percentages of parasitized erythrocytes (PPE) from 2.4% to 8.8% were obtained. Infected RBC adapted to Irrad S were transferred to the irradiated substrate in vitro culture system, by using serum irradiated at 25 kGy and RBC from 10 to 70 Gy. The PPE ranged from 3.1 to 11. Culture of Babesia bigemina (B. bigemina) was established with Irrad S (25 kGy); its propagation was achieved in tissue culture flasks reaching PPE from 0.5 to 4.3 with no statistical difference (P > 0.05) when compared to the nonirradiated control culture (1.2-4.8). B. bigemina-infected RBCs were transferred to the modified culture system by adding irradiated serum and RBC (25 kGy and 70 Gy, respectively). PPE obtained in culture flasks were from 0.8 to 4.2. The results indicate that gamma irradiation is a suitable method to inactivate potential viral contamination and eliminate bacteria from bovine serum, to produce a live attenuated vaccine through the in vitro culture.
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Affiliation(s)
- Carmen Rojas
- CENID Parasitología Veterinaria, INIFAP, Morelos, C.P. 62500, Mexico
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Jeong YM, Choi YG, Kim DS, Park SH, Yoon JA, Kwon SB, Park ES, Park KC. Cytoprotective effect of green tea extract and quercetin against hydrogen peroxide-induced oxidative stress. Arch Pharm Res 2005; 28:1251-6. [PMID: 16350851 DOI: 10.1007/bf02978208] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Abstract
In this study, we evaluated the cytoprotective effects of antioxidative substances in hydrogen peroxide (H2O2) treated Mel-Ab melanocytes. Tested substances include selenium, quercetin, green tea (GT) extract, and several vitamins (ascorbic acid, Trolox, and folic acid). Of these, both quercetin and GT extract were found to have strong cytoprotective effects on H2O2-induced cell death. We also examined additive effects, but no combination of two of any of the above substances was found to act synergistically against oxidative damage in Mel-Ab cells. Nevertheless, a multi-combination of GT extract, quercetin, and folic acid appeared to prevent cellular damage in a synergistic manner, which suggests that combinations of antioxidants may be of importance, and that co-treatment with antioxidants offers a possible means of treating vitiligo, which is known to be related to melanocyte oxidative stress.
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Affiliation(s)
- Yun-Mi Jeong
- Department of Dermatology, Seoul National University College of Medicine, Korea
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