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For: Suárez ASG, Stefan A, Lemma S, Conte E, Hochkoeppler A. Continuous enzyme-coupled assay of phosphate- or pyrophosphate-releasing enzymes. Biotechniques 2012;53:99-103. [DOI: 10.2144/000113905] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2012] [Accepted: 06/28/2012] [Indexed: 11/23/2022]  Open
Number Cited by Other Article(s)
1
Kinateder T, Mayer C, Nazet J, Sterner R. Improving enzyme functional annotation by integrating in vitro and in silico approaches: The example of histidinol phosphate phosphatases. Protein Sci 2024;33:e4899. [PMID: 38284491 PMCID: PMC10804674 DOI: 10.1002/pro.4899] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2023] [Revised: 12/13/2023] [Accepted: 01/01/2024] [Indexed: 01/30/2024]
2
Daley SR, Gallanosa PM, Sparling R. Kinetic characterization of annotated glycolytic enzymes present in cellulose-fermenting Clostridium thermocellum suggests different metabolic roles. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2023;16:112. [PMID: 37438781 DOI: 10.1186/s13068-023-02362-8] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2023] [Accepted: 06/27/2023] [Indexed: 07/14/2023]
3
Kinateder T, Drexler L, Straub K, Merkl R, Sterner R. Experimental and computational analysis of the ancestry of an evolutionary young enzyme from histidine biosynthesis. Protein Sci 2023;32:e4536. [PMID: 36502290 PMCID: PMC9798254 DOI: 10.1002/pro.4536] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2022] [Revised: 12/01/2022] [Accepted: 12/03/2022] [Indexed: 12/14/2022]
4
Discovery and Biotechnological Exploitation of Glycoside-Phosphorylases. Int J Mol Sci 2022;23:ijms23063043. [PMID: 35328479 PMCID: PMC8950772 DOI: 10.3390/ijms23063043] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Revised: 03/01/2022] [Accepted: 03/03/2022] [Indexed: 02/04/2023]  Open
5
Kropp C, Bruckmann A, Babinger P. Controlling Enzymatic Activity by Modulating the Oligomerization State via Chemical Rescue and Optical Control. Chembiochem 2021;23:e202100490. [PMID: 34633135 PMCID: PMC9298306 DOI: 10.1002/cbic.202100490] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2021] [Revised: 10/08/2021] [Indexed: 12/22/2022]
6
ASFV DNA polymerase extends recessed DNAs with catalytic efficiencies outperforming those exerted on gapped DNA substrates. Biochem Biophys Res Commun 2020;534:526-532. [PMID: 33223051 DOI: 10.1016/j.bbrc.2020.11.049] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2020] [Accepted: 11/12/2020] [Indexed: 01/17/2023]
7
Hoffmann KM, Goncuian ES, Karimi KL, Amendola CR, Mojab Y, Wood KM, Prussia GA, Nix J, Yamamoto M, Lathan K, Orion IW. Cofactor Complexes of DesD, a Model Enzyme in the Virulence-related NIS Synthetase Family. Biochemistry 2020;59:3427-3437. [PMID: 32885650 DOI: 10.1021/acs.biochem.9b00899] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
8
Engineering of Bifunctional Enzymes with Uricase and Peroxidase Activities for Simple and Rapid Quantification of Uric Acid in Biological Samples. Catalysts 2020. [DOI: 10.3390/catal10040428] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]  Open
9
Rice K, Batul K, Whiteside J, Kelso J, Papinski M, Schmidt E, Pratasouskaya A, Wang D, Sullivan R, Bartlett C, Weadge JT, Van der Kamp MW, Moreno-Hagelsieb G, Suits MD, Horsman GP. The predominance of nucleotidyl activation in bacterial phosphonate biosynthesis. Nat Commun 2019;10:3698. [PMID: 31420548 PMCID: PMC6697681 DOI: 10.1038/s41467-019-11627-6] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2018] [Accepted: 07/25/2019] [Indexed: 12/22/2022]  Open
10
Tee KL, Xu JH, Wong TS. Protein engineering for bioreduction of carboxylic acids. J Biotechnol 2019;303:53-64. [PMID: 31325477 DOI: 10.1016/j.jbiotec.2019.07.001] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 07/01/2019] [Accepted: 07/01/2019] [Indexed: 02/07/2023]
11
Kovermann M, Stefan A, Castaldo A, Caramia S, Hochkoeppler A. Structural and catalytic insights into HoLaMa, a derivative of Klenow DNA polymerase lacking the proofreading domain. PLoS One 2019;14:e0215411. [PMID: 30970012 PMCID: PMC6457538 DOI: 10.1371/journal.pone.0215411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 04/01/2019] [Indexed: 11/18/2022]  Open
12
Linde M, Heyn K, Merkl R, Sterner R, Babinger P. Hexamerization of Geranylgeranylglyceryl Phosphate Synthase Ensures Structural Integrity and Catalytic Activity at High Temperatures. Biochemistry 2018;57:2335-2348. [DOI: 10.1021/acs.biochem.7b01284] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
13
Grube CD, Roy H. A continuous assay for monitoring the synthetic and proofreading activities of multiple aminoacyl-tRNA synthetases for high-throughput drug discovery. RNA Biol 2017;15:659-666. [PMID: 29168435 PMCID: PMC6103669 DOI: 10.1080/15476286.2017.1397262] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
14
The thumb domain is not essential for the catalytic action of HoLaMa DNA polymerase. Protein J 2017;36:453-460. [DOI: 10.1007/s10930-017-9740-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/18/2022]
15
The DnaE polymerase from Deinococcus radiodurans features RecA-dependent DNA polymerase activity. Biosci Rep 2016;36:BSR20160364. [PMID: 27789781 PMCID: PMC5137535 DOI: 10.1042/bsr20160364] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2016] [Revised: 10/25/2016] [Accepted: 10/27/2016] [Indexed: 12/25/2022]  Open
16
Lapenta F, Montón Silva A, Brandimarti R, Lanzi M, Gratani FL, Vellosillo Gonzalez P, Perticarari S, Hochkoeppler A. Escherichia coli DnaE Polymerase Couples Pyrophosphatase Activity to DNA Replication. PLoS One 2016;11:e0152915. [PMID: 27050298 PMCID: PMC4822814 DOI: 10.1371/journal.pone.0152915] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/29/2016] [Accepted: 03/21/2016] [Indexed: 11/19/2022]  Open
17
Singh D, Schaaper RM, Hochkoeppler A. A continuous spectrophotometric enzyme-coupled assay for deoxynucleoside triphosphate triphosphohydrolases. Anal Biochem 2015;496:43-9. [PMID: 26723493 DOI: 10.1016/j.ab.2015.11.027] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2015] [Revised: 11/19/2015] [Accepted: 11/24/2015] [Indexed: 02/03/2023]
18
Forget SM, Jee A, Smithen DA, Jagdhane R, Anjum S, Beaton SA, Palmer DRJ, Syvitski RT, Jakeman DL. Kinetic evaluation of glucose 1-phosphate analogues with a thymidylyltransferase using a continuous coupled enzyme assay. Org Biomol Chem 2015;13:866-75. [PMID: 25408103 DOI: 10.1039/c4ob02057j] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
19
Montón Silva A, Lapenta F, Stefan A, Dal Piaz F, Ceccarelli A, Perrone A, Hochkoeppler A. Simultaneous ternary extension of DNA catalyzed by a trimeric replicase assembled in vivo. Biochem Biophys Res Commun 2015;462:14-20. [PMID: 25918025 DOI: 10.1016/j.bbrc.2015.04.067] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2015] [Accepted: 04/12/2015] [Indexed: 10/23/2022]
20
Martina CE, Lapenta F, Montón Silva A, Hochkoeppler A. HoLaMa: A Klenow sub-fragment lacking the 3'-5' exonuclease domain. Arch Biochem Biophys 2015;575:46-53. [PMID: 25906742 DOI: 10.1016/j.abb.2015.04.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/02/2015] [Accepted: 04/14/2015] [Indexed: 11/30/2022]
21
Stefan A, Ceccarelli A, Conte E, Montón Silva A, Hochkoeppler A. The multifaceted benefits of protein co-expression in Escherichia coli. J Vis Exp 2015. [PMID: 25742393 DOI: 10.3791/52431] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/31/2022]  Open
22
Montgomery JL, Wittwer CT. Influence of PCR reagents on DNA polymerase extension rates measured on real-time PCR instruments. Clin Chem 2013;60:334-40. [PMID: 24081987 DOI: 10.1373/clinchem.2013.212829] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
23
Montgomery JL, Rejali N, Wittwer CT. Stopped-flow DNA polymerase assay by continuous monitoring of dNTP incorporation by fluorescence. Anal Biochem 2013;441:133-9. [PMID: 23872003 DOI: 10.1016/j.ab.2013.07.008] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/17/2013] [Revised: 07/03/2013] [Accepted: 07/06/2013] [Indexed: 11/29/2022]
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