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For: Crossley RM, Johnson S, Tsingos E, Bell Z, Berardi M, Botticelli M, Braat QJS, Metzcar J, Ruscone M, Yin Y, Shuttleworth R. Modeling the extracellular matrix in cell migration and morphogenesis: a guide for the curious biologist. Front Cell Dev Biol 2024;12:1354132. [PMID: 38495620 PMCID: PMC10940354 DOI: 10.3389/fcell.2024.1354132] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2023] [Accepted: 02/12/2024] [Indexed: 03/19/2024]  Open
Number Cited by Other Article(s)
1
Flowerday E, Evans EJ, Grant C, Dallon JC. Viscoelastic cell model of sorting in the dictyostelium discoideum slug. PLoS One 2025;20:e0325141. [PMID: 40435357 PMCID: PMC12118998 DOI: 10.1371/journal.pone.0325141] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2025] [Accepted: 05/06/2025] [Indexed: 06/01/2025]  Open
2
Ghosh A, Bera AK, Adhikari J, Ghosh S, Singh V, Basu S, Pati F. Bioprinting of transparent and adhesive corneal patches: Integrating photo-crosslinkable dopamine-conjugated silk fibroin and decellularized cornea matrix for sutureless tissue integration and regeneration. Int J Biol Macromol 2025;306:141761. [PMID: 40049492 DOI: 10.1016/j.ijbiomac.2025.141761] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2024] [Revised: 02/22/2025] [Accepted: 03/03/2025] [Indexed: 05/11/2025]
3
Cai J, Zhou H, Luo W, Chen W, Li J, Liang J, Yang J, Sun X, Lin Z. Modeling and Optimization of Nonlinear Viscoelastic Behavior for Tissue-Engineered Blood Vessels. Tissue Eng Part C Methods 2025;31:191-202. [PMID: 40331879 DOI: 10.1089/ten.tec.2025.0039] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/08/2025]  Open
4
Botticelli M, Metzcar J, Phillips T, Cox S, Keshavanarayana P, Spill F. A hybrid computational model of cancer spheroid growth with ribose-induced collagen stiffening. Front Bioeng Biotechnol 2025;13:1515962. [PMID: 40271351 PMCID: PMC12014586 DOI: 10.3389/fbioe.2025.1515962] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/23/2024] [Accepted: 03/26/2025] [Indexed: 04/25/2025]  Open
5
Metzcar J, Duggan BS, Fischer B, Murphy M, Heiland R, Macklin P. A Simple Framework for Agent-Based Modeling with Extracellular Matrix. Bull Math Biol 2025;87:43. [PMID: 39937344 PMCID: PMC11821717 DOI: 10.1007/s11538-024-01408-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Accepted: 12/21/2024] [Indexed: 02/13/2025]
6
Kim J, Jeong H, Falcó C, Hruska AM, Martinson WD, Marzoratti A, Araiza M, Yang H, Franck C, Carrillo JA, Guo M, Wong IY. Collective Transitions from Orbiting to Matrix Invasion in 3D Multicellular Spheroids. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.02.10.636936. [PMID: 39990484 PMCID: PMC11844419 DOI: 10.1101/2025.02.10.636936] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 02/25/2025]
7
Agrawal A, Javanmardi Y, Watson SA, Serwinski B, Djordjevic B, Li W, Aref AR, Jenkins RW, Moeendarbary E. Mechanical signatures in cancer metastasis. NPJ BIOLOGICAL PHYSICS AND MECHANICS 2025;2:3. [PMID: 39917412 PMCID: PMC11794153 DOI: 10.1038/s44341-024-00007-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Accepted: 10/20/2024] [Indexed: 02/09/2025]
8
Keijzer KAE, Tsingos E, Merks RMH. How cells align to structured collagen fibrils: a hybrid cellular Potts and molecular dynamics model with dynamic mechanosensitive focal adhesions. Front Cell Dev Biol 2025;12:1462277. [PMID: 39834385 PMCID: PMC11743931 DOI: 10.3389/fcell.2024.1462277] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2024] [Accepted: 12/04/2024] [Indexed: 01/22/2025]  Open
9
Fujiwara H. Dynamic duo: Cell-extracellular matrix interactions in hair follicle development and regeneration. Dev Biol 2024;516:20-34. [PMID: 39059679 DOI: 10.1016/j.ydbio.2024.07.012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2024] [Revised: 06/20/2024] [Accepted: 07/23/2024] [Indexed: 07/28/2024]
10
Lappala A. The next revolution in computational simulations: Harnessing AI and quantum computing in molecular dynamics. Curr Opin Struct Biol 2024;89:102919. [PMID: 39306949 DOI: 10.1016/j.sbi.2024.102919] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/01/2024] [Revised: 08/20/2024] [Accepted: 08/27/2024] [Indexed: 11/29/2024]
11
Nemati H, de Graaf J. The cellular Potts model on disordered lattices. SOFT MATTER 2024;20:8337-8352. [PMID: 39283268 PMCID: PMC11404401 DOI: 10.1039/d4sm00445k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/15/2024] [Accepted: 08/28/2024] [Indexed: 09/20/2024]
12
Noël V, Ruscone M, Shuttleworth R, Macnamara CK. PhysiMeSS - a new physiCell addon for extracellular matrix modelling. GIGABYTE 2024;2024:gigabyte136. [PMID: 39449986 PMCID: PMC11500100 DOI: 10.46471/gigabyte.136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2024] [Accepted: 09/25/2024] [Indexed: 10/26/2024]  Open
13
Marzban S, Srivastava S, Kartika S, Bravo R, Safriel R, Zarski A, Anderson ARA, Chung CH, Amelio AL, West J. Spatial interactions modulate tumor growth and immune infiltration. NPJ Syst Biol Appl 2024;10:106. [PMID: 39349537 PMCID: PMC11442770 DOI: 10.1038/s41540-024-00438-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Accepted: 09/10/2024] [Indexed: 10/02/2024]  Open
14
Stoian A, Adil A, Biniazan F, Haykal S. Two Decades of Advances and Limitations in Organ Recellularization. Curr Issues Mol Biol 2024;46:9179-9214. [PMID: 39194760 DOI: 10.3390/cimb46080543] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Revised: 08/14/2024] [Accepted: 08/19/2024] [Indexed: 08/29/2024]  Open
15
Ramos M, Martín-García R, Curto MÁ, Gómez-Delgado L, Moreno MB, Sato M, Portales E, Osumi M, Rincón SA, Pérez P, Ribas JC, Cortés JC. Fission yeast Bgs1 glucan synthase participates in the control of growth polarity and membrane traffic. iScience 2024;27:110477. [PMID: 39156640 PMCID: PMC11326927 DOI: 10.1016/j.isci.2024.110477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Revised: 02/14/2024] [Accepted: 07/05/2024] [Indexed: 08/20/2024]  Open
16
Zhang K, Zhang P, Shi G, Wang L, Sun C, Xiang W. Tendon extracellular-matrix-derived tissue engineering micro-tissue for Achilles tendon injury regeneration in rats. J Orthop Surg Res 2024;19:377. [PMID: 38926735 PMCID: PMC11210118 DOI: 10.1186/s13018-024-04863-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Accepted: 06/19/2024] [Indexed: 06/28/2024]  Open
17
Ali M, Benfante V, Di Raimondo D, Laudicella R, Tuttolomondo A, Comelli A. A Review of Advances in Molecular Imaging of Rheumatoid Arthritis: From In Vitro to Clinic Applications Using Radiolabeled Targeting Vectors with Technetium-99m. Life (Basel) 2024;14:751. [PMID: 38929734 PMCID: PMC11204982 DOI: 10.3390/life14060751] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 05/24/2024] [Accepted: 06/07/2024] [Indexed: 06/28/2024]  Open
18
Li X, Tao M, Quan L, Zhang H, Xin Y, Wu X, Fang X, Fan J, Tian X, Wang X, Wen L, Yu T, Ao Q. Preparation and evaluation of decellularized epineurium as an anti-adhesive biofilm in peripheral nerve repair. Regen Biomater 2024;11:rbae054. [PMID: 38845852 PMCID: PMC11153341 DOI: 10.1093/rb/rbae054] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2024] [Revised: 05/07/2024] [Accepted: 05/10/2024] [Indexed: 06/09/2024]  Open
19
Tomescu LC, Sas I, Sarb S, Cimpean AM. Evaluation of Vasculogenic Factors in the Developing Embryo at Weeks Five and Seven With a Special Focus on CD133 and TIE2 Markers. Cureus 2024;16:e60353. [PMID: 38756714 PMCID: PMC11096276 DOI: 10.7759/cureus.60353] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 05/15/2024] [Indexed: 05/18/2024]  Open
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