Geobiology of Andean Microbial Ecosystems Discovered in Salar de Atacama, Chile

Lake morphology and meteorological conditions impact stratification of saline lakes in the Atacama Desert

Saline lakes exist in various morphologies within salar environments, occurring as ephemeral to persistent bodies of water despite evaporative conditions. Salar environments are often characterized by strong diurnal fluctuations in temperature, UV irradiation, and wind speed, however, the extent to which these meteorological conditions impact saline lakes with different morphological characteristics has yet to be investigated. Here, we evaluate the impacts of diurnal changes in wind speed and wind direction on lake water temperature, electrical conductivity, alkalinity, and stable isotope ratios of hydrogen (δ2H), oxygen (δ18O), and sulfur (δ34SSO4) in two Na-Cl saline lakes in the Salar de Llamara (Atacama Desert, Northern Chile) with different morphologies. Results indicate that water masses in the relatively deeper (~ 0.6 m) steep-sided lake with crystalline lake bottom remained stratified despite the nearly order of magnitude increase in diurnal wind speed, while waters in the relatively shallow (< 0.2 m), gently-sloping lake colonized by microbial mats were well-mixed. Conditions in the shallow, gently-sloping lake were heterogeneous, with diurnal variations approximating 15.6% and 23.9% of known seasonal ranges in temperature and electrical conductivity, respectively. Consequently, the chemistry of shallow, gently-sloping saline lake environments is dynamic on diurnal time scales, indicating that resident microbial communities tolerate a greater range in environmental conditions than previously appreciated. Results suggest that the impacts of diurnal changes in meteorological conditions on saline lake stratification depend on lake morphology, an observation with implications for patterns of mineral deposition in salar environments.

An astrobiological perspective on microbial biofilms: their importance for habitability and production of detectable and lasting biosignatures

The search for life elsewhere in the universe has remained one of the main goals of astrobiological exploration. In this quest, extreme environments on Earth have served as analogs to study the potential habitability of Mars and icy moons, which include but are not limited to hydrothermal vent systems, acid lakes, deserts, and polar ice, among others. Within the various forms that life manifests, biofilms constitute one of the most widespread phenotypes and are ubiquitous in extreme environments. Biofilms are structured communities of microorganisms enclosed in a matrix of extracellular polymeric substances (EPS) that protect against unfavorable and dynamic conditions. These concentrated structures and their associated chemistry may serve as unique and persistent signatures of life processes that may aid in their detection. Here we propose biofilms as a model system to understand the habitability of extraterrestrial systems and as sources of recognizable and persistent biosignatures for life detection. By testing these ideas in extreme analog environments on Earth, this approach could be used to guide and focus future exploration of samples encompassing the geologic record of early Earth as well as other planets and moons of our solar system.

Untangling the Primary Biotic and Abiotic Controls on Oxygen, Inorganic and Organic Carbon Isotope Signals in Modern Microbialites

Microbialites are organo-sedimentary structures formed throughout most of the Earth history, over a wide range of geological contexts, and under a multitude of environmental conditions affecting their composition. The carbon and oxygen isotope records of carbonates, which are most often their main constituents, have been used as a widespread tool for paleoenvironmental reconstructions. However, the multiplicity of factors that influence microbialites formation is not always properly distinguished in their isotopic record, in both ancient and modern settings. It is therefore crucial to refine our understanding of the processes controlling microbialites isotopic signal. Here, we analyzed the carbon and oxygen isotope compositions from bulk and micro-drilled carbonates as well as bulk organic carbon isotope compositions in microbialites from four Mexican volcanic crater lakes of increasing alkalinity. The survey of four lakes allows comparing microbialite formation processes and their geochemical record within distinct physico-chemical contexts. The geochemical analyses were performed in parallel to petrographic and mineralogical characterization and interpreted in light of the known microbial community composition for microbialites of the same lakes. Combining these data, we show that the potential for isotopic biosignature preservation primarily depends on physico-chemical conditions. Carbon isotope biosignatures pointing out to an autotrophic influence on carbonate precipitation are preserved in the lowest alkalinity lakes. By contrast, higher alkalinity lakes, where microbialites are more massive, favor carbonate precipitation in isotopic equilibrium with the lake water, with secondary influence of heterotrophic organic carbon degradation. From these results, we suggest that microbialite carbonate C isotope records can be interpreted as the balance between the microbialite net primary productivity and the amount of precipitation that relates to physico-chemical forcing. The signals of microbialite oxygen isotope compositions highlight a lack of understanding in the oxygen isotope records of relatively rare carbonate phases such as hydromagnesite. Nonetheless, we show that these signals are primarily influenced by the basins' hydrology, though biological effects may also play a (minor) role. Overall, both carbon and oxygen isotopic signals may record a mixture of different local/global and biotic/abiotic phenomena, making microbialites intricate archives of their growth environment, which should thus be interpreted with cautions and in the light of their surrounding sediments.

New Report of Cyanobacteria and Cyanotoxins in El Pañe Reservoir: A Threat for Water Quality in High-Andean Sources from PERU

Cyanobacteria are cosmopolitan organisms; nonetheless, climate change and eutrophication are increasing the occurrence of cyanobacteria blooms (cyanoblooms), thereby raising the risk of cyanotoxins in water sources used for drinking, agriculture, and livestock. This study aimed to determine the presence of cyanobacteria, including toxigenic cyanobacteria and the occurrence of cyanotoxins in the El Pañe reservoir located in the high-Andean region, Arequipa, Peru, to support water quality management. The study included morphological observation of cyanobacteria, molecular determination of cyanobacteria (16S rRNA analysis), and analysis of cyanotoxins encoding genes (mcyA for microcystins, cyrJ for cylindrospermopsins, sxtl for saxitoxins, and AnaC for anatoxins). In parallel, chemical analysis using Liquid Chromatography coupled with Mass Spectrometry (LC-MS/MS) was performed to detect the presence of cyanotoxins (microcystins, cylindrospermopsin, saxitoxin, and anatoxin, among others) and quantification of Microcystin-LR. Morphological data show the presence of Dolichospermum sp., which was confirmed by molecular analysis. Microcystis sp. was also detected through 16S rRNA analysis and the presence of mcyA gene related to microcystin production was found in both cyanobacteria. Furthermore, microcystin-LR and demethylated microcystin-LR were identified by chemical analysis. The highest concentrations of microcystin-LR were 40.60 and 25.18 µg/L, in May and November 2022, respectively. Microcystins were detected in cyanobacteria biomass. In contrast, toxins in water (dissolved) were not detected. Microcystin concentrations exceeded many times the values established in Peruvian regulation and the World Health Organization (WHO) in water intended for human consumption (1 µg/L). This first comprehensive report integrates morphological, molecular, and chemical data and confirms the presence of two toxigenic cyanobacteria and the presence of microcystins in El Pañe reservoir. This work points out the need to implement continuous monitoring of cyanobacteria and cyanotoxins in the reservoir and effective water management measures to protect the human population from exposure to these contaminants.

Bacterial carbonic anhydrase-induced carbonates mitigate soil erosion in biological soil crusts

Soil erosion is a significant environmental issue worldwide, particularly in island regions where land resources are exceedingly scarce. Biological soil crusts play a crucial role in mitigating soil erosion, yet the precise effect and mechanism of biological soil crusts against erosion remain ambiguous. In this study, biological soil crusts at various developmental stages from a tropical coral island in the South China Sea were chosen to investigate the role of carbonic anhydrase in mitigating erosion. A cohesive strength meter, real-time quantitative PCR, and 16S rRNA gene high-throughput sequencing were employed to assess variations in soil antiscouribility as well as bacterial abundance and composition during the formation and development of biological soil crusts. Scanning electron microscopy was utilized to detect carbonates induced by bacterial carbonic anhydrase and elucidate their role in the solidification of sand particles. The findings indicate that the formation and development of biological soil crusts significantly enhance anti-scouribility. Comparison to those of bare coral sand, the shear stress increased from 0.35 to 1.11 N/m2 in the dark biocrusts. Moreover, significantly elevated carbonic anhydrase activity was observed in biological soil crusts, demonstrating a positive correlation with antiscouribility. In addition, there was a significant increase in bacterial abundance within the biological soil crusts. The enrichment of Cyanobacteriales and Chloroflexales potentially contributed to the increased carbonic anhydrase activity and antiscouribility. Furthermore, three cyanobacterial strains with carbonic anhydrase activity were isolated from biological soil crusts and subsequently confirmed to enhance sand solidification through microbial carbonate precipitation. This study presents initial evidence for the role of microbial carbonic anhydrase in enhancing the antiscouribility of biological soil crusts during their formation and development. These findings offer novel insights into the functional and mechanistic dimensions underlying the mitigation of soil erosion facilitated by biological soil crusts, which are valuable for implementing sustainable biorestoration and environmental management technologies to prevent soil erosion.

Exploring Soil Bacterial Diversity in Relation to Edaphic Physicochemical Properties of High-altitude Wetlands from Argentine Puna

High Andean wetlands, particularly those known as vegas or bofedales, are essential conservation ecosystems due to their significant contribution to ecosystem services. The soil microbial communities in these ecosystems play a crucial role in fundamental processes such as decomposition and nutrient cycling, sustaining life in the region. However, at present, these microbial communities are poorly understood. In order to contribute to this knowledge, we aimed to characterize and compare the microbial communities from soils of seven Argentine Puna vegas and to analyze their association with soil physicochemical characteristics. Proteobacteria (Gamma and Alphaproteobacteria) was the dominant phylum across all vegas, followed in abundance by Actinobacteriota, Desulfobacterota, and Chloroflexi. Furthermore, the abundance of specific bacterial families and genera varied significantly between the vegas; some of them can be associated with plant growth-promoting bacteria such as Rhodomicrobium in La Quebradita and Quebrada del Diablo, Bacillus in Antofalla and Las Quinuas. Laguna Negra showed no shared ASVs with abundance in genera such as Sphingomonas and Pseudonocardia. The studied vegas also differed in their soil physicochemical properties; however, associations between the composition of microbial communities with the edaphic parameters measured were not found. These results suggest that other environmental factors (e.g., geographic, climatic, and plant communities' characteristics) could determine soil microbial diversity patterns. Further investigations are needed to be focused on understanding the composition and function of microorganisms in the soil associated with specific vegetation types in these high-altitude wetlands, which will provide valuable insights into the ecological dynamics of these ecosystems for conservation strategies.

Physical, chemical, and microbial feedbacks controlling brine geochemistry and lake morphology in polyextreme salar environments

Despite the harsh environmental conditions in the world's oldest and driest desert, some salt flat or 'salar' environments in the Atacama Desert host standing bodies of water known as saline lakes. Evaporite minerals deposited within saline lakes result from the equilibrium of environmental, sedimentological, and biogeochemical processes that occur in the salar; consequently, these minerals are sensitive records of human activities and ecological, evolutionary, and geological changes. The objective of this study was to evaluate feedbacks between physical, chemical, and microbial processes that culminate in distinct trends in brine chemistry, saline lake morphology, and associated evaporite sediments. Using samples from the Puquios of the Salar de Llamara, Atacama Desert, northern Chile, an analysis of spatial gradients and vertical stratification of lake elemental chemistry and mineral saturation indices were integrated with a comprehensive analysis of lake morphology, including depth, slope gradient, substrate type, and mineralogy. Lake waters ranged from saline to hypersaline, and exhibited normal, well mixed and inverse stratification patterns, and results suggest a correlation with lake morphology in the Salar de Llamara. Saline to hypersaline lakes (>150 mS/cm) with stratified brines tended to have crystalline substrate and deep (>35 cm) and steep-sided lake morphologies, while unstratified lakes with lower electrical conductivity (<90 mS/cm and microbial substrates had gentle slopes and characteristically shallow depths (<30 cm). Differences in minor element chemistry (Mn and Sr) between saline lakes were observed on scales of meters to kilometers, and result in different accessory mineral assemblages. Quantification of the physical, chemical, and microbial feedbacks that produce the observed heterogeneity in these ecosystems provides key insight into the geochemical composition and lake morphology of saline lakes in extreme environments around the world.

Ecological variability based on lipid biomarkers in astrobiologically interesting wetlands from the Argentinian central Andes

Andean wetlands hold extremophilic communities adapted to live in harsh conditions. Here, we investigated the microbial ecology of three high-altitude hypersaline ponds from La Puna region (Argentina) showing an increasing extent of desiccation by analyzing their lipid sedimentary record. We recreated the microbial community structure and the carbon metabolisms in each lacustrine system based on the molecular distribution of lipid biomarkers and their compound-specific carbon and hydrogen isotopic signatures. We detected lipid compounds considered to be biomarkers of cyanobacteria, sulfate-reducing bacteria, purple sulfur bacteria, and archaea in the three Andean ponds, as well as diatoms in the intermediate salinity system. The relative abundance of purple sulfur and sulfate-reducing bacteria decreased with salinity, whereas cyanobacteria and archaea decreased their relative abundance in the mid-saline pond to increase it again and became both prevailing at the highest salinity. Carbon fixation in the three ponds was driven by a combination of the reductive tricarboxylic acid cycle, the reductive pentose phosphate cycle, and the reductive acetyl-CoA pathway. This work is the first to describe molecular and isotopic lipid fingerprints in wetlands from the central Andean Puna, and serves as a basis for further biogeochemical studies in the area.