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Peng Y, Jiang L, Wu J, Yang J, Guo Z, Miao M, Peng Z, Chang M, Miao B, Liu H, Liang Y, Yin H, He Q, Liu X. Red Mud Potentially Alleviates Ammonia Nitrogen Inhibition in Swine Manure Anaerobic Digestion by Enhancing Phage-Mediated Ammonia Assimilation. Microorganisms 2025; 13:690. [PMID: 40142582 PMCID: PMC11944383 DOI: 10.3390/microorganisms13030690] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2025] [Revised: 03/13/2025] [Accepted: 03/17/2025] [Indexed: 03/28/2025] Open
Abstract
Red mud has been demonstrated to improve the methane production performance of anaerobic digestion (AD). However, the influence of red mud on ammonia nitrogen inhibition during AD through the mediating role of bacteria-phages interactions in this process remains poorly understood. Thus, this study investigated the impact of red mud on nitrogen metabolism in AD and characterized the phage and prokaryotic communities through a metagenomic analysis. The results showed that red mud significantly increased methane production by 23.1% and promoted the conversion of ammonia nitrogen into organic nitrogen, resulting in a 4.8% increase in total nitrogen. Simultaneously, it enriched the key microbial genera Methanothrix, Proteinophilum, and Petrimonas by 0.5%, 0.8%, and 2.7%, respectively, suggesting an enhancement in syntrophic acetate oxidation with greater ammonia tolerance. A viral metagenomic analysis identified seven nitrogen-metabolism-related auxiliary metabolic genes (AMGs), with glnA (encoding glutamine synthetase) being the most abundant. Compared to the control treatments, the red mud treatments led to a higher abundance of temperate phages and an increased number of AMGs. Furthermore, two new hosts carrying glnA (Mycolicibacteria smegmatis and Kitasatopola aureofaciens) were predicted, indicating that red mud expanded the host range of phages and promoted the spread of AMGs. Overall, our findings highlight the importance of phages in alleviating ammonia nitrogen inhibition and provide a novel understanding of the role of red mud in the AD of swine manure.
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Affiliation(s)
- Yulong Peng
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Luhua Jiang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Junzhao Wu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Jiejie Yang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Ziwen Guo
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Manjun Miao
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Zhiyuan Peng
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Meng Chang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
| | - Bo Miao
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Hongwei Liu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Yili Liang
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Huaqun Yin
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
| | - Qiang He
- Department of Civil and Environmental Engineering, University of Tennessee, Knoxville, TN 37996, USA;
| | - Xueduan Liu
- School of Minerals Processing and Bioengineering, Central South University, Changsha 410083, China; (Y.P.); (J.W.); (J.Y.); (Z.G.); (M.M.); (Z.P.); (M.C.); (B.M.); (H.L.); (Y.L.); (H.Y.); (X.L.)
- Key Laboratory of Biometallurgy of Ministry of Education, Central South University, Changsha 410083, China
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Zeng Y, Zhong X, Chen Y, Gou M, Yu K, Tang YQ. Characteristics of Phages and Their Interactions With Hosts in Anaerobic Reactors. Environ Microbiol 2025; 27:e70040. [PMID: 39868667 DOI: 10.1111/1462-2920.70040] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Revised: 12/18/2024] [Accepted: 01/03/2025] [Indexed: 01/28/2025]
Abstract
Anaerobic digestion (AD) of organic wastes relies on the interaction and cooperation of various microorganisms. Phages are crucial components of the microbial community in AD systems, but their diversity and interactions with the prokaryotic populations are still inadequately comprehended. In this study, 2121 viral operational taxonomic units (vOTUs) were recovered from 12 anaerobic fatty acid-fed reactors. Notably, 63.1% of these vOTUs could not be assigned to any known family, revealing a substantial presence of uncharted phages specifically associated with AD environments. Over half of the vOTUs associated with hosts had the capability to infect multiple hosts, ranging from 2 to 49, with a prevalent tendency to infect 2-5 hosts. In silico predictions of phage-host linkages uncovered that only a small fraction of vOTUs were shared across different functional groups, including fermentative bacteria, syntrophic fatty acid-oxidising bacteria (SFOB) and methanogens. Phages linked to hosts in all three groups primarily consisted of generalists and temperate species, especially those linked to SFOB. Additionally, metabolic reconstruction identified auxiliary metabolic genes participating in fatty acid degradation, methanogenesis and energy conservation. The present study provides insights into phage characteristics and their in situ interactions with prokaryotic hosts, highlighting their ecological role in AD systems.
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Affiliation(s)
- Yan Zeng
- Institute of New Energy and Low-Carbon Technology, Sichuan University, Chengdu, China
- Sichuan Environmental Protection Key Laboratory of Organic Wastes Valorization, Chengdu, China
| | - Xiaozhong Zhong
- College of Life Sciences, Sichuan Agricultural University, Yaan, China
| | - Yating Chen
- Sichuan Environmental Protection Key Laboratory of Organic Wastes Valorization, Chengdu, China
- Institute for Disaster Management and Reconstruction, Sichuan University, Chengdu, China
| | - Min Gou
- Sichuan Environmental Protection Key Laboratory of Organic Wastes Valorization, Chengdu, China
- College of Architecture and Environment, Sichuan University, Chengdu, China
| | - Ke Yu
- Eco-Environment and Resource Efficiency Research Laboratory, School of Environment and Energy, Shenzhen Graduate School, Peking University, Shenzhen, China
| | - Yue-Qin Tang
- Institute of New Energy and Low-Carbon Technology, Sichuan University, Chengdu, China
- Sichuan Environmental Protection Key Laboratory of Organic Wastes Valorization, Chengdu, China
- College of Architecture and Environment, Sichuan University, Chengdu, China
- Engineering Research Centre of Alternative Energy Materials and Devices, Ministry of Education, Chengdu, China
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Adams M. Ammonia-stressed anaerobic digestion: Sensitivity dynamics of key syntrophic interactions and methanogenic pathways-A review. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 371:123183. [PMID: 39492135 DOI: 10.1016/j.jenvman.2024.123183] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Revised: 10/17/2024] [Accepted: 10/31/2024] [Indexed: 11/05/2024]
Abstract
The problematic anaerobic digestion (AD) of protein-rich substrates owing to their high ammonia content continues to hinder optimum methanation despite their high potential for offsetting greenhouse gas (GHG) emissions. This review focuses on the analyses of the sensitivity dynamics of key AD processes as well as the microbial interactions and exchanges that occur with them. Aside from the apparent increased risk associated with thermophilic ammonia-rich substrate AD, the marginally higher energy generation compared to mesophilic systems is not commensurate to the energy requirement. Moreover, while comparable FAN thresholds have been confirmed, TAN thresholds are susceptible to physical chemistry and so vary greatly. Profiling of the metabolic capability of front-end AD microbiome revealed Bacteroidetes, Firmicutes, and Synergistetes as some of the ammonia-resilient bacteria groups while Proteobacteria and Actinobacteria were the most fragile taxa. Besides the predominance of incomplete propionate oxidizing bacteria under ammonia stress conditions, syntrophic propionate oxidation (SPO) is usually shifted from the methylmalonyl CoA to the dismutation pathway. Furthermore, besides their different recoverability potentials, distinct methanogenic groups are differentially impacted by different ammonia species. Prevailing literature evidence suggests that conductive material assisted bioaugmentation with SAO-HM consortia, and in-situ H2 supplementation are the most effective for expediting electron transfer and relieving ammonia stress. These valuable insights should inform the design of targeted ammonia inhibition mitigation strategies.
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Affiliation(s)
- Mabruk Adams
- Civil Engineering, School of Engineering, College of Science and Engineering, University of Galway, Galway, H91 TK33, Ireland.
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Yusuf HH, Xiaofang P, Ye ZL, Abdelwahab TAM, Fodah AEM. A novel strategy for enhancing high solid anaerobic digestion of fecal slag and food waste using percolate recirculation and dosage of nano zero-valent iron. WATER RESEARCH 2024; 267:122477. [PMID: 39306933 DOI: 10.1016/j.watres.2024.122477] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/02/2024] [Revised: 08/01/2024] [Accepted: 09/17/2024] [Indexed: 11/28/2024]
Abstract
To speed up reaching UN Sustainable Development Goal 6 for safe sanitation by 2030, integrating high-solid anaerobic digestion (HSAD) into decentralized systems could recycle fecal slag (FS) and food waste (FW), aiding a circular economy and toilet revolution. In this study, a percolate recirculation system and conductive material were used to improve mass transfer, stability, and enhance methane production in HSAD of FS and FW. This setup consists of a percolate tank and a digester tank, where nano-zero valent iron (nZVI) was dosed in the percolate tank (PnZVI in P) and the digester tank (PnZVI in D) and compared with a control with no additive (PControl). The highest cumulative methane yield of 519.43 mL/gVS was achieved in PnZVI in D, which was 4.52 and 3.59 times higher than that of PControl (144.59 mL/gVS) and PnZVI in P (114.96 mL/gVS). This finding demonstrates that the dosing strategy of PnZVI in D facilitated effective interaction among organic matter, microbial communities, and nZVI, resulting in organics removal efficiencies of 67.42 % (total solid) and 77.22 % (volatile solid). Moreover, microbial community analysis supported the efficacy of the PnZVI in D strategy, revealing the enrichment of Clostridium sensu stricto 1 (46.91 %), which potentially engaged in interspecies electron transport (Interspecies hydrogen transfer (IHT) and direct interspecies electron transfer (DIET)) with Methanobacterium (81.19 %) and Methanosarcina (17.11 %). These interactions contribute to enhanced methane yield and stability maintenance in the HSAD system with percolate recirculation. The findings of this study demonstrate that the implementation of HSAD of FS and FW, coupled with percolate recirculation and the addition of nZVI, holds promise for enabling sustainable sanitation practices in developing regions. Moreover, this approach not only facilitates resource recovery but also eliminates the requirement for water.
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Affiliation(s)
- Hamza Hassan Yusuf
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Pan Xiaofang
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; University of Chinese Academy of Sciences, Beijing 100049, China.
| | - Zhi-Long Ye
- Key Laboratory of Urban Pollutant Conversion, Institute of Urban Environment, Chinese Academy of Sciences, Xiamen 361021, China; Fujian Key Laboratory of Digital Technology for Territorial Space Analysis and Simulation, Fuzhou 350108, China.
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Li L, Bu Y, Feng W, Kubota K, Pan Y, Huang Y, Li YY, Qin Y. Biomethane recovery and prokaryotic shifts in anaerobic co-digestion of food waste and paper waste in organic fraction of municipal solid waste: Effect of paper content. BIORESOURCE TECHNOLOGY 2024; 406:130964. [PMID: 38876279 DOI: 10.1016/j.biortech.2024.130964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/16/2024] [Revised: 06/03/2024] [Accepted: 06/11/2024] [Indexed: 06/16/2024]
Abstract
Biomethane recovery from paper waste (PW) was achieved by mesophilic co-digestion with food waste. The feeding material containing 0%, 20%, 40% and 50% of PW in total solids (TS) were investigated in the long-term continuous operation. The results showed that the biogas production, pH, alkalinity and biodegradation of volatile solids (79.8 ± 3.6%) were stable for PW contents no more than 50%. The PW = 50% condition was considered the critical limit for the reasons of pump clogging, sufficient alkalinity (2.0 ± 0.3 g-CaCO3/L) and depletion of ammonia. Prokaryotic diversity indices decreased with the increased PW contents. Great shifts were observed in the prokaryotic communities before and after the PW contents reaches 50% as TS (18.4% as total weights). Biomethane recovery yields were deceasing from 445 to 350 NL-CH4/kg-fed-volatile-solids. The PW contents as 40% as TS (13.1% as total weights) obtained the optimal performance among all the feeding conditions.
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Affiliation(s)
- Lu Li
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China; National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou University of Science and Technology, Suzhou, China; Laboratory of Environmental Protection Engineering, Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan
| | - Yi Bu
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China
| | - Wen Feng
- Zhejiang Huanlong Environmental Protection Co., Ltd., Hangzhou, China
| | - Kengo Kubota
- Laboratory of Environmental Protection Engineering, Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan
| | - Yang Pan
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China; National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou University of Science and Technology, Suzhou, China
| | - Yong Huang
- School of Environmental Science and Engineering, Suzhou University of Science and Technology, Suzhou, China; National and Local Joint Engineering Laboratory of Municipal Sewage Resource Utilization Technology, Suzhou University of Science and Technology, Suzhou, China
| | - Yu-You Li
- Laboratory of Environmental Protection Engineering, Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan
| | - Yu Qin
- Laboratory of Environmental Protection Engineering, Department of Civil and Environmental Engineering, Graduate School of Engineering, Tohoku University, Sendai, Japan.
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Li B, Guo H, Deng Z, Chen L, Ji C, Xu X, Zhang Y, Cheng S, Wang Z. Investigating functional mechanisms in the Co-biodegradation of lignite and guar gum under the influence of salinity. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2024; 366:121860. [PMID: 39025008 DOI: 10.1016/j.jenvman.2024.121860] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Revised: 07/06/2024] [Accepted: 07/12/2024] [Indexed: 07/20/2024]
Abstract
The biodegradation of guar gum by microorganisms sourced from coalbeds can result in low-temperature gel breaking, thereby reducing reservoir damage. However, limited attention has been given to the influence of salinity on the synergistic biodegradation of coal and guar gum. In this study, biodegradation experiments of guar gum and lignite were conducted under varying salinity conditions. The primary objective was to investigate the controlling effects and mechanisms of salinity on the synergistic biodegradation of lignite and guar gum. The findings revealed that salinity had an inhibitory effect on the biomethane production from the co-degradation of lignite and guar gum. The biomethane production declined with increasing salinity levels, decreasing from 120.9 mL to 47.3 mL. Even under 20 g/L salt stress conditions, bacteria in coalbeds could effectively break the gel and the viscosity decreased to levels below 5 mPa s. As salinity increased, the removal rate of soluble chemical oxygen demand (SCOD) decreased from 55.63% to 31.17%, and volatile fatty acids (VFAs) accumulated in the digestion system. High salt environment reduces the intensity of each fluorescence peak. Alterations in salinity led to changes in microbial community structure and diversity. Under salt stress, there was an increased relative abundance of Proteiniphilum and Methanobacterium, ensuring the continuity of anaerobic digestion. Hydrogentrophic methanogens exhibited higher salt tolerance compared to acetoclastic methanogens. These findings provide experimental evidence supporting the use of guar gum fracturing fluid in coalbeds with varying salinity levels.
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Affiliation(s)
- Bing Li
- School of Energy Science and Engineering, Henan Polytechnic University, Jiaozuo, 454000, China; School of Life Science and Bioengineering, Henan University of Urban Construction, Pingdingshan, 467036, China.
| | - Hongyu Guo
- School of Energy Science and Engineering, Henan Polytechnic University, Jiaozuo, 454000, China; Collaborative Innovation Center of Coalbed Methane and Shale Gas for Central Plains Economic Region, Jiaozuo, 454000, China.
| | - Ze Deng
- Research Institute of Petroleum Exploration & Development, Beijing, 100083, China.
| | - Linyong Chen
- State Key Laboratory of Coal and CBM Co-Mining, Jincheng, 048012, China.
| | - Changjiang Ji
- State Key Laboratory of Coal and CBM Co-Mining, Jincheng, 048012, China.
| | - Xiaokai Xu
- School of Energy Science and Engineering, Henan Polytechnic University, Jiaozuo, 454000, China.
| | - Yawei Zhang
- School of Energy Science and Engineering, Henan Polytechnic University, Jiaozuo, 454000, China.
| | - Song Cheng
- College of Chemistry and Chemical Engineering, Henan Polytechnic University, Jiaozuo, 454000, China.
| | - Zhenzhi Wang
- College of Chemistry and Chemical Engineering, Henan Polytechnic University, Jiaozuo, 454000, China.
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Otto P, Puchol-Royo R, Ortega-Legarreta A, Tanner K, Tideman J, de Vries SJ, Pascual J, Porcar M, Latorre-Pérez A, Abendroth C. Multivariate comparison of taxonomic, chemical and operational data from 80 different full-scale anaerobic digester-related systems. BIOTECHNOLOGY FOR BIOFUELS AND BIOPRODUCTS 2024; 17:84. [PMID: 38902807 PMCID: PMC11191226 DOI: 10.1186/s13068-024-02525-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/12/2024] [Accepted: 05/30/2024] [Indexed: 06/22/2024]
Abstract
BACKGROUND The holistic characterization of different microbiomes in anaerobic digestion (AD) systems can contribute to a better understanding of these systems and provide starting points for bioengineering. The present study investigates the microbiome of 80 European full-scale AD systems. Operational, chemical and taxonomic data were thoroughly collected, analysed and correlated to identify the main drivers of AD processes. RESULTS The present study describes chemical and operational parameters for a broad spectrum of different AD systems. With this data, Spearman correlation and differential abundance analyses were applied to narrow down the role of the individual microorganisms detected. The authors succeeded in further limiting the number of microorganisms in the core microbiome for a broad range of AD systems. Based on 16S rRNA gene amplicon sequencing, MBA03, Proteiniphilum, a member of the family Dethiobacteraceae, the genus Caldicoprobacter and the methanogen Methanosarcina were the most prevalent and abundant organisms identified in all digesters analysed. High ratios for Methanoculleus are often described for agricultural co-digesters. Therefore, it is remarkable that Methanosarcina was surprisingly high in several digesters reaching ratios up to 47.2%. The various statistical analyses revealed that the microorganisms grouped according to different patterns. A purely taxonomic correlation enabled a distinction between an acetoclastic cluster and a hydrogenotrophic one. However, in the multivariate analysis with chemical parameters, the main clusters corresponded to hydrolytic and acidogenic microorganisms, with SAOB bacteria being particularly important in the second group. Including operational parameters resulted in digester-type specific grouping of microbes. Those with separate acidification stood out among the many reactor types due to their unexpected behaviour. Despite maximizing the organic loading rate in the hydrolytic pretreatments, these stages turned into extremely robust methane production units. CONCLUSIONS From 80 different AD systems, one of the most holistic data sets is provided. A very distinct formation of microbial clusters was discovered, depending on whether taxonomic, chemical or operational parameters were combined. The microorganisms in the individual clusters were strongly dependent on the respective reference parameters.
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Affiliation(s)
- Pascal Otto
- Institute of Waste Management and Circular Economy, Technische Universität Dresden, Pirna, Germany
| | - Roser Puchol-Royo
- Darwin Bioprospecting Excellence, S.L. Parc Cientific Universitat de Valencia, Paterna, Valencia, Spain
| | - Asier Ortega-Legarreta
- Darwin Bioprospecting Excellence, S.L. Parc Cientific Universitat de Valencia, Paterna, Valencia, Spain
| | - Kristie Tanner
- Darwin Bioprospecting Excellence, S.L. Parc Cientific Universitat de Valencia, Paterna, Valencia, Spain
| | | | | | - Javier Pascual
- Darwin Bioprospecting Excellence, S.L. Parc Cientific Universitat de Valencia, Paterna, Valencia, Spain
| | - Manuel Porcar
- Darwin Bioprospecting Excellence, S.L. Parc Cientific Universitat de Valencia, Paterna, Valencia, Spain
- Institute for Integrative Systems Biology I2SysBio, (University of Valencia - CSIC), Paterna, Spain
| | - Adriel Latorre-Pérez
- Darwin Bioprospecting Excellence, S.L. Parc Cientific Universitat de Valencia, Paterna, Valencia, Spain
| | - Christian Abendroth
- Chair of Circular Economy, Brandenburgische Technische Universität Cottbus-Senftenberg, Lehrgebäude 4A R2.25, Siemens-Halske-Ring 8, 03046, Cottbus, Germany.
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8
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Welz PJ, De Jonge N, Lilly M, Kaira W, Mpofu AB. Integrated biological system for remediation and valorization of tannery wastewater: Focus on microbial communities responsible for methanogenesis and sulfidogenesis. BIORESOURCE TECHNOLOGY 2024; 395:130411. [PMID: 38309670 DOI: 10.1016/j.biortech.2024.130411] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Revised: 01/29/2024] [Accepted: 01/29/2024] [Indexed: 02/05/2024]
Abstract
Microbial communities in hybrid linear flow channel reactors and anaerobic sequencing batch reactors operated in series for remediation and beneficiation of tannery wastewater were assessed. Despite concurrent sulfidogenesis, more intensive pre-treatment in hybrid linear flow channel reactors reduced methanogenic inhibition usually associated with anaerobic digestion of tannery effluent and promoted efficiency (max 321 mLCH4/gCODconsumed, 59% biogas CH4). Nitrification and biological sulfate reduction were key metabolic pathways involved in overall and sulfate reducing bacterial community selection, respectively, during pre-treatment. Taxonomic selection could be explained by the proteinaceous and saline character of tannery effluent, with dominant genera being protein and/or amino acid degrading, halotolerant and/or ammonia tolerant. Complete oxidizers dominated the sulfidogenic populations during pre-treatment, while aceticlastic genera dominated the methanogenic populations during anaerobic digestion. With more intensive pre-treatment, the system shows promise for remediation and recovery of biogas and sulfur from tannery wastewater in support of a bio-circular economy.
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Affiliation(s)
- P J Welz
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Symphony way, Bellville, Cape Town 7535, South Africa.
| | - N De Jonge
- Department of Chemistry and Bioscience, Aalborg University, Fredrik Bajers vej 7H, Aalborg DK-9220, Denmark.
| | - M Lilly
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Symphony way, Bellville, Cape Town 7535, South Africa.
| | - W Kaira
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Symphony way, Bellville, Cape Town 7535, South Africa
| | - A B Mpofu
- Applied Microbial and Health Biotechnology Institute, Cape Peninsula University of Technology, Symphony way, Bellville, Cape Town 7535, South Africa; Department of Chemical Engineering, Cape Peninsula University of Technology, Symphony way, Bellville, Cape Town 7535, South Africa.
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Zhou Z, Liu X, Chen R, Hu X, Guo Q. Treatment of phenolic wastewater by anaerobic fluidized bed microbial fuel cell using carbon brush as anode: microbial community analysis and m-cresol degradation mechanism. Bioprocess Biosyst Eng 2023; 46:1801-1815. [PMID: 37878182 DOI: 10.1007/s00449-023-02936-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2023] [Accepted: 10/14/2023] [Indexed: 10/26/2023]
Abstract
Anaerobic fluidized bed microbial fuel cell (AFB-MFC) is a technology that combines fluidized bed reactor and microbial fuel cell to treat organic wastewater and generate electricity. The performance and the mechanism of treating m-cresol wastewater in AFB-MFC using carbon brush as biofilm anode were studied. After 48 h of operation, the m-cresol removal efficiency of AFB-MFC, MAR-AFB (fluidized bed bioreactor with acclimated anaerobic sludge), MAR-FB (ordinary fluidized bed reactor with only macroporous adsorptive resin) and AST (traditional anaerobic sludge treatment) were 95.29 ± 0.67%, 85.78 ± 1.81%, 71.24 ± 1.86% and 70.41 ± 0.32% respectively. The maximum output voltage and the maximum power density of AFB-MFC using carbon brush as biofilm anode were 679.7 mV and 166.6 mW/m2 respectively. The results of high-throughput sequencing analysis indicated the relative abundance of dominant electroactive bacteria, such as Trichococcus, Geobacter, and Pseudomonas, on the anode carbon brushes was higher than that of AST, and also identified such superior m-cresol-degrading bacteria as Bdellovibrio, Thermomonas, Hydrogenophaga, etc. Based on the determination of m-cresol metabolites detected by Gas Chromatography-Mass Spectrometry (GC-MS), the possible biodegradation pathway of m-cresol under anaerobic and aerobic conditions in AFB-MFC was speculated. The results showed that m-cresol was decomposed into formic acid-acetic anhydride and 3-methylpropionic acid under the action of electrochemistry, which is a simple degradation pathway without peripheral metabolism in AFB-MFC.
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Affiliation(s)
- Zhaoxin Zhou
- State Key Laboratory Base of Eco-Chemical Engineering in College of Chemical Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Xinmin Liu
- State Key Laboratory Base of Eco-Chemical Engineering in College of Chemical Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China.
| | - Ranran Chen
- State Key Laboratory Base of Eco-Chemical Engineering in College of Chemical Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
| | - Xiude Hu
- State Key Laboratory of High-Efficiency Coal Utilization and Green Chemical Engineering, College of Chemistry and Chemical Engineering, Ningxia University, Yinchuan, 750021, China
| | - Qingjie Guo
- State Key Laboratory Base of Eco-Chemical Engineering in College of Chemical Engineering, Qingdao University of Science and Technology, Qingdao, 266042, China
- State Key Laboratory of High-Efficiency Coal Utilization and Green Chemical Engineering, College of Chemistry and Chemical Engineering, Ningxia University, Yinchuan, 750021, China
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Li J, Liu H, Zhao C, Zhang J, He W. Autoinducer-2 quorum sensing regulates biofilm formation and chain elongation metabolic pathways to enhance caproate synthesis in microbial electrochemical system. CHEMOSPHERE 2023; 344:140384. [PMID: 37806331 DOI: 10.1016/j.chemosphere.2023.140384] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2023] [Revised: 08/26/2023] [Accepted: 10/05/2023] [Indexed: 10/10/2023]
Abstract
Quorum sensing (QS) have been explored extensively. However, most studies focused on N-acyl homoserine lactones (AHLs) participating in intraspecies QS. In this study, autoinducer-2 (AI-2, participating in interspecies QS) with different concentration was investigated for chain elongation in microbial electrosynthesis (MES). The results demonstrated that the R3 treatment, which involved adding 10 μM of 4,5-dihydroxy-2,3-pentanedione (DPD) in the reactor, exhibited the best performance. The concentration of caproate was increased by 66.88% and the redox activity of cathodic electroactive biofilms (EABs) was enhanced. Meanwhile, microbial community data indicated that Negativicutes relative abundance was increased obviously in R3 treatment. In this study, the transcriptome Kyoto Encyclopedia of Genes and Genomes (KEGG) and Gene Ontology (GO) databases were used to analyze the metabolic pathway of chain elongation involving fatty acid biosynthesis (FAB) pathway and reverse β-oxidization (RBO) pathway. KEGG analysis revealed that fatty acid elongation metabolism (p < 0.001), tryptophan metabolism (p < 0.01), arginine and proline metabolism (p < 0.05) were significantly improved in R3 treatment. GO analysis suggested that R3 treatment mainly upregulated significantly transmembrane signaling receptor activity (p < 0.01), oxidoreductase activity (p < 0.05), and phosphorelay signal transduction (p < 0.05). Moreover, metatranscriptomic analyses also showed that R3 treatment could upregulate the LuxP extracellular receptor, LuxO transcriptional activator, LsrB periplasmic protein, and were beneficial to both FAB and RBO pathways. These findings provided a new insight into chain elongation in MES system.
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Affiliation(s)
- Jing Li
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, Jiangsu Province, PR China
| | - He Liu
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, Jiangsu Province, PR China; Jiangsu Collaborative Innovation Center of Technology and Material of Water Treatment, Suzhou University of Science and Technology, Suzhou, 215011, Jiangsu Province, PR China.
| | - Chao Zhao
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, Jiangsu Province, PR China
| | - Jie Zhang
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, Jiangsu Province, PR China
| | - Wanying He
- Jiangsu Key Laboratory of Anaerobic Biotechnology, School of Environment and Civil Engineering, Jiangnan University, Wuxi, 214122, Jiangsu Province, PR China
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11
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Grégoire DS, George NA, Hug LA. Microbial methane cycling in a landfill on a decadal time scale. Nat Commun 2023; 14:7402. [PMID: 37973978 PMCID: PMC10654671 DOI: 10.1038/s41467-023-43129-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 11/01/2023] [Indexed: 11/19/2023] Open
Abstract
Landfills generate outsized environmental footprints due to microbial degradation of organic matter in municipal solid waste, which produces the potent greenhouse gas methane. With global solid waste production predicted to increase substantially in the next few decades, there is a pressing need to better understand the temporal dynamics of biogeochemical processes that control methane cycling in landfills. Here, we use metagenomic approaches to characterize microbial methane cycling in waste that was landfilled over 39 years. Our analyses indicate that newer waste supports more diverse communities with similar composition compared to older waste, which contains lower diversity and more varied communities. Older waste contains primarily autotrophic organisms with versatile redox metabolisms, whereas newer waste is dominated by anaerobic fermenters. Methane-producing microbes are more abundant, diverse, and metabolically versatile in new waste compared to old waste. Our findings indicate that predictive models for methane emission in landfills overlook methane oxidation in the absence of oxygen, as well as certain microbial lineages that can potentially contribute to methane sinks in diverse habitats.
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Affiliation(s)
- Daniel S Grégoire
- Department of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
- Department of Chemistry, Carleton University, Ottawa, ON, K1S 5B6, Canada.
| | - Nikhil A George
- Department of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada
| | - Laura A Hug
- Department of Biology, University of Waterloo, Waterloo, ON, N2L 3G1, Canada.
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Zhang F, Qin Y, Zhao C, Wu W. Soft magnetic ferrite for enhanced anaerobic digestion of food waste: Effects on methane production and magnetic recovery. BIORESOURCE TECHNOLOGY 2023; 387:129601. [PMID: 37541551 DOI: 10.1016/j.biortech.2023.129601] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/31/2023] [Revised: 07/20/2023] [Accepted: 07/30/2023] [Indexed: 08/06/2023]
Abstract
Soft magnetic ferrite (SMF) is a potentially efficient anaerobic digestion (AD) additive that can be recovered simultaneously along with the microorganisms it carries. In this study, two typical SMFs (Fe3O4 and γ-Fe2O3) were compared in batch experiments to investigate their effects on food waste AD and to examine the recovery characteristics of both the SMFs and the microorganisms they carried after AD. The results showed that Fe3O4 and γ-Fe2O3 addition increased methane production by 31% and 68% respectively, compared with the control treatment. Both SMF materials and enriched microorganisms were effectively adsorbed post-AD using a magnet. The observed enhancement in biomethanization after SMF addition was likely due to enhanced syntrophic acetate oxidation and hydrogenotrophic methanogenesis, and direct interspecific electron transfer. γ-Fe2O3 outperformed Fe3O4 due to its high recycling rate and ability to promote Methanosarcina growth. This study provides a potential economically efficient solution for developing AD enhancement technologies.
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Affiliation(s)
- Feixiang Zhang
- Institute of Environment Science and Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Province Key Laboratory for Water Pollution Control and Environmental Safety Technology, Zhejiang 310058, PR China
| | - Yong Qin
- Institute of Environment Science and Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Province Key Laboratory for Water Pollution Control and Environmental Safety Technology, Zhejiang 310058, PR China.
| | - Changxun Zhao
- Institute of Environment Science and Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Province Key Laboratory for Water Pollution Control and Environmental Safety Technology, Zhejiang 310058, PR China
| | - Weixiang Wu
- Institute of Environment Science and Technology, College of Environmental and Resource Sciences, Zhejiang University, Hangzhou 310058, PR China; Zhejiang Province Key Laboratory for Water Pollution Control and Environmental Safety Technology, Zhejiang 310058, PR China
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Wu M, Yang ZH, Jiang TB, Zhang WW, Wang ZW, Hou QX. Enhancing sludge methanogenesis with changed micro-environment of anaerobic microorganisms by Fenton iron mud. CHEMOSPHERE 2023; 341:139884. [PMID: 37648172 DOI: 10.1016/j.chemosphere.2023.139884] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 06/14/2023] [Accepted: 08/17/2023] [Indexed: 09/01/2023]
Abstract
Conductive materials have been demonstrated to enhance sludge methanogenesis, but few researches have concentrated on the interaction among conductive materials, microorganisms and their immediate living environment. In this study, Fenton iron mud with a high abundance of Fe(III) was recycled and applied in anaerobic reactors to promote anaerobic digestion (AD) process. The results show that the primary content of extracellular polymeric substances (EPS) such as polysaccharides and proteins increased significantly, possibly promoting microbial aggregation. Furthermore, with the increment of redox mediators including humic substances in EPS and Fe(III) introduced by Fenton iron mud, the direct interspecies electron transfer (DIET) between methanogens and interacting bacteria could be accelerated, which enhanced the rate of methanogenesis in anaerobic digestion (35.21 ± 4.53% increase compared to the control). The further analysis of the anaerobic microbial community confirmed the fact that Fenton iron mud enriched functional microorganisms, such as the abundance of CO2-reducing (e.g. Chloroflexi) and Fe(III)-reducing bacteria (e.g., Tepidimicrobium), thereby expediting the electron transfer reaction in the AD process via microbial DIET and dissimilatory iron reduction (DIR). This work will make it possible for using the recycled hazardous material - Fenton iron mud to improve the performance of anaerobic granular sludge during methanogenesis.
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Affiliation(s)
- Ming Wu
- Tianjin Key Laboratory of Pulp and Paper, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Zhen-Hu Yang
- Tianjin Key Laboratory of Pulp and Paper, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Tong-Bao Jiang
- Tianjin Key Laboratory of Pulp and Paper, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Wen-Wen Zhang
- Tianjin Key Laboratory of Pulp and Paper, Tianjin University of Science & Technology, Tianjin, 300457, China
| | - Zhi-Wei Wang
- College of Light Industry and Food Engineering, Guangxi University, Nanning, 530004, China
| | - Qing-Xi Hou
- Tianjin Key Laboratory of Pulp and Paper, Tianjin University of Science & Technology, Tianjin, 300457, China.
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Hassa J, Tubbesing TJ, Maus I, Heyer R, Benndorf D, Effenberger M, Henke C, Osterholz B, Beckstette M, Pühler A, Sczyrba A, Schlüter A. Uncovering Microbiome Adaptations in a Full-Scale Biogas Plant: Insights from MAG-Centric Metagenomics and Metaproteomics. Microorganisms 2023; 11:2412. [PMID: 37894070 PMCID: PMC10608942 DOI: 10.3390/microorganisms11102412] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 09/15/2023] [Accepted: 09/18/2023] [Indexed: 10/29/2023] Open
Abstract
The current focus on renewable energy in global policy highlights the importance of methane production from biomass through anaerobic digestion (AD). To improve biomass digestion while ensuring overall process stability, microbiome-based management strategies become more important. In this study, metagenomes and metaproteomes were used for metagenomically assembled genome (MAG)-centric analyses to investigate a full-scale biogas plant consisting of three differentially operated digesters. Microbial communities were analyzed regarding their taxonomic composition, functional potential, as well as functions expressed on the proteome level. Different abundances of genes and enzymes related to the biogas process could be mostly attributed to different process parameters. Individual MAGs exhibiting different abundances in the digesters were studied in detail, and their roles in the hydrolysis, acidogenesis and acetogenesis steps of anaerobic digestion could be assigned. Methanoculleus thermohydrogenotrophicum was an active hydrogenotrophic methanogen in all three digesters, whereas Methanothermobacter wolfeii was more prevalent at higher process temperatures. Further analysis focused on MAGs, which were abundant in all digesters, indicating their potential to ensure biogas process stability. The most prevalent MAG belonged to the class Limnochordia; this MAG was ubiquitous in all three digesters and exhibited activity in numerous pathways related to different steps of AD.
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Affiliation(s)
- Julia Hassa
- Genome Research of Industrial Microorganisms, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstrasse 27, 33615 Bielefeld, Germany; (J.H.)
| | - Tom Jonas Tubbesing
- Computational Metagenomics Group, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, Germany; (T.J.T.)
| | - Irena Maus
- Genome Research of Industrial Microorganisms, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstrasse 27, 33615 Bielefeld, Germany; (J.H.)
| | - Robert Heyer
- Multidimensional Omics Data Analyses Group, Leibniz-Institut für Analytische Wissenschaften-ISAS-e.V., Bunsen-Kirchhoff-Straße 11, Dortmund 44139, Germany
- Multidimensional Omics Data Analyses Group, Faculty of Technology, Bielefeld University, Universitätsstraße 25, 33615 Bielefeld, Germany
| | - Dirk Benndorf
- Biosciences and Process Engineering, Anhalt University of Applied Sciences, Bernburger Straße 55, Postfach 1458, 06366 Köthen, Germany
- Bioprocess Engineering, Otto von Guericke University, Universitätsplatz 2, 39106 Magdeburg, Germany
- Bioprocess Engineering, Max Planck Institute for Dynamics of Complex Technical Systems, Sandtorstraße 1, 39106 Magdeburg, Germany
| | - Mathias Effenberger
- Bavarian State Research Center for Agriculture, Institute for Agricultural Engineering and Animal Husbandry, Vöttinger Straße 36, 85354 Freising, Germany
| | - Christian Henke
- Computational Metagenomics Group, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, Germany; (T.J.T.)
| | - Benedikt Osterholz
- Computational Metagenomics Group, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, Germany; (T.J.T.)
| | - Michael Beckstette
- Computational Metagenomics Group, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, Germany; (T.J.T.)
| | - Alfred Pühler
- Genome Research of Industrial Microorganisms, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstrasse 27, 33615 Bielefeld, Germany; (J.H.)
| | - Alexander Sczyrba
- Computational Metagenomics Group, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstraße 27, 33615 Bielefeld, Germany; (T.J.T.)
| | - Andreas Schlüter
- Genome Research of Industrial Microorganisms, Center for Biotechnology (CeBiTec), Bielefeld University, Universitätsstrasse 27, 33615 Bielefeld, Germany; (J.H.)
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