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For: Kaliman S, Jayachandran C, Rehfeldt F, Smith AS. Limits of Applicability of the Voronoi Tessellation Determined by Centers of Cell Nuclei to Epithelium Morphology. Front Physiol 2016;7:551. [PMID: 27932987 PMCID: PMC5122581 DOI: 10.3389/fphys.2016.00551] [Citation(s) in RCA: 35] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2016] [Accepted: 11/03/2016] [Indexed: 01/13/2023]  Open
Number Cited by Other Article(s)
1
Roshal DS, Fedorenko KK, Martin M, Baghdiguian S, Rochal SB. Topological balance of cell distributions in plane monolayers. J Phys Condens Matter 2024;36:265101. [PMID: 38537291 DOI: 10.1088/1361-648x/ad387a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Accepted: 03/27/2024] [Indexed: 04/06/2024]
2
Barsimantov Mandel J, Solorio L, Tepole AB. Geometry of adipocyte packing in subcutaneous tissue contributes to nonlinear tissue properties captured through a Gaussian process surrogate model. Soft Matter 2024. [PMID: 38477130 DOI: 10.1039/d3sm01661g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 03/14/2024]
3
Andrés-San Román JA, Gordillo-Vázquez C, Franco-Barranco D, Morato L, Fernández-Espartero CH, Baonza G, Tagua A, Vicente-Munuera P, Palacios AM, Gavilán MP, Martín-Belmonte F, Annese V, Gómez-Gálvez P, Arganda-Carreras I, Escudero LM. CartoCell, a high-content pipeline for 3D image analysis, unveils cell morphology patterns in epithelia. Cell Rep Methods 2023;3:100597. [PMID: 37751739 PMCID: PMC10626192 DOI: 10.1016/j.crmeth.2023.100597] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Revised: 07/19/2023] [Accepted: 08/31/2023] [Indexed: 09/28/2023]
4
Merighi A, Lossi L. Co-cultures of cerebellar slices from mice with different reelin genetic backgrounds as a model to study cortical lamination. F1000Res 2023;11:1183. [PMID: 37881513 PMCID: PMC10594056 DOI: 10.12688/f1000research.126787.1] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/07/2023] [Indexed: 10/27/2023]  Open
5
Merighi A, Lossi L. Co-cultures of cerebellar slices from mice with different reelin genetic backgrounds as a model to study cortical lamination. F1000Res 2023;11:1183. [PMID: 37881513 PMCID: PMC10594056 DOI: 10.12688/f1000research.126787.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 09/07/2023] [Indexed: 10/27/2023]  Open
6
Ronteix G, Aristov A, Bonnet V, Sart S, Sobel J, Esposito E, Baroud CN. Griottes: a generalist tool for network generation from segmented tissue images. BMC Biol 2022;20:178. [PMID: 35953853 PMCID: PMC9367069 DOI: 10.1186/s12915-022-01376-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2022] [Accepted: 07/15/2022] [Indexed: 11/10/2022]  Open
7
Guan G, Zhao Z, Tang C. Delineating mechanisms and design principles of Caenorhabditis elegans embryogenesis using in toto high-resolution imaging data and computational modeling. Comput Struct Biotechnol J 2022;20:5500-5515. [PMID: 36284714 PMCID: PMC9562942 DOI: 10.1016/j.csbj.2022.08.024] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2022] [Revised: 08/10/2022] [Accepted: 08/11/2022] [Indexed: 11/19/2022]  Open
8
Saraswathibhatla A, Zhang J, Notbohm J. Coordination of contractile tension and cell area changes in an epithelial cell monolayer. Phys Rev E 2022;105:024404. [PMID: 35291100 DOI: 10.1103/physreve.105.024404] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 02/01/2022] [Indexed: 06/14/2023]
9
McKinley ET, Shao J, Ellis ST, Heiser CN, Roland JT, Macedonia MC, Vega PN, Shin S, Coffey RJ, Lau KS. MIRIAM: A machine and deep learning single-cell segmentation and quantification pipeline for multi-dimensional tissue images. Cytometry A 2022;101:521-528. [PMID: 35084791 PMCID: PMC9167255 DOI: 10.1002/cyto.a.24541] [Citation(s) in RCA: 16] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2021] [Revised: 12/16/2021] [Accepted: 01/17/2022] [Indexed: 11/25/2022]
10
Shahpari MS, Namavar MRN, Kamali Dolatabadi LKD, Aligholi HA, Emamghoreishi ME. Morphological changes in the substantia nigra pars reticulata of the mice during kindling. Neurosci Lett 2021;764:136278. [PMID: 34600041 DOI: 10.1016/j.neulet.2021.136278] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/22/2021] [Revised: 09/27/2021] [Accepted: 09/27/2021] [Indexed: 11/21/2022]
11
Melo HPM, Maia FR, Nunes AS, Reis RL, Oliveira JM, Araújo NAM. Combining experiments and in silico modeling to infer the role of adhesion and proliferation on the collective dynamics of cells. Sci Rep 2021;11:19894. [PMID: 34615941 DOI: 10.1038/s41598-021-99390-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/16/2021] [Accepted: 09/23/2021] [Indexed: 02/06/2023]  Open
12
Heger L, Lühr JJ, Amon L, Smith AS, Eissing N, Dudziak D. Six-Color Confocal Immunofluorescence Microscopy with 4-Laser Lines. Methods Mol Biol 2021;2350:21-30. [PMID: 34331276 DOI: 10.1007/978-1-0716-1593-5_2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/15/2023]
13
Holcomb MC, Gao GJJ, Servati M, Schneider D, McNeely PK, Thomas JH, Blawzdziewicz J. Mechanical feedback and robustness of apical constrictions in Drosophila embryo ventral furrow formation. PLoS Comput Biol 2021;17:e1009173. [PMID: 34228708 PMCID: PMC8284804 DOI: 10.1371/journal.pcbi.1009173] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/21/2020] [Revised: 07/16/2021] [Accepted: 06/10/2021] [Indexed: 11/19/2022]  Open
14
Lau C, Kalantari B, Batts KP, Ferrell LD, Nyberg SL, Graham RP, Moreira RK. The Voronoi theory of the normal liver lobular architecture and its applicability in hepatic zonation. Sci Rep 2021;11:9343. [PMID: 33927276 PMCID: PMC8085188 DOI: 10.1038/s41598-021-88699-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2020] [Accepted: 04/12/2021] [Indexed: 11/24/2022]  Open
15
Rundo L, Tangherloni A, Tyson DR, Betta R, Militello C, Spolaor S, Nobile MS, Besozzi D, Lubbock ALR, Quaranta V, Mauri G, Lopez CF, Cazzaniga P. ACDC: Automated Cell Detection and Counting for Time-Lapse Fluorescence Microscopy. Appl Sci (Basel) 2020;10:6187. [PMID: 34306736 DOI: 10.3390/app10186187] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/29/2023]
16
Zheng Y, Li YW, Ciamarra MP. Hyperuniformity and density fluctuations at a rigidity transition in a model of biological tissues. Soft Matter 2020;16:5942-5950. [PMID: 32542303 DOI: 10.1039/d0sm00776e] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
17
Leedale JA, Kyffin JA, Harding AL, Colley HE, Murdoch C, Sharma P, Williams DP, Webb SD, Bearon RN. Multiscale modelling of drug transport and metabolism in liver spheroids. Interface Focus 2020;10:20190041. [PMID: 32194929 PMCID: PMC7061947 DOI: 10.1098/rsfs.2019.0041] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/13/2019] [Indexed: 12/22/2022]  Open
18
Janssen LMC. Active glasses. J Phys Condens Matter 2019;31:503002. [PMID: 31469099 DOI: 10.1088/1361-648x/ab3e90] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
19
Peercy BE, Starz-Gaiano M. Clustered cell migration: Modeling the model system of Drosophila border cells. Semin Cell Dev Biol 2019;100:167-176. [PMID: 31837934 DOI: 10.1016/j.semcdb.2019.11.010] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2019] [Revised: 11/11/2019] [Accepted: 11/15/2019] [Indexed: 01/19/2023]
20
Lovrić J, Kaliman S, Barfuss W, Schröder-Turk GE, Smith AS. Geometric effects in random assemblies of ellipses. Soft Matter 2019;15:8566-8577. [PMID: 31637393 DOI: 10.1039/c9sm01067j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/10/2023]
21
Klatt MA, Lovrić J, Chen D, Kapfer SC, Schaller FM, Schönhöfer PWA, Gardiner BS, Smith AS, Schröder-Turk GE, Torquato S. Universal hidden order in amorphous cellular geometries. Nat Commun 2019;10:811. [PMID: 30778054 PMCID: PMC6379405 DOI: 10.1038/s41467-019-08360-5] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2018] [Accepted: 01/03/2019] [Indexed: 12/04/2022]  Open
22
Sharp TA, Merkel M, Manning ML, Liu AJ. Inferring statistical properties of 3D cell geometry from 2D slices. PLoS One 2019;14:e0209892. [PMID: 30707703 PMCID: PMC6358273 DOI: 10.1371/journal.pone.0209892] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2018] [Accepted: 12/13/2018] [Indexed: 02/01/2023]  Open
23
Reddy A, Buckley MB, Arora A, Bates FS, Dorfman KD, Grason GM. Stable Frank-Kasper phases of self-assembled, soft matter spheres. Proc Natl Acad Sci U S A 2018;115:10233-10238. [PMID: 30249659 PMCID: PMC6187128 DOI: 10.1073/pnas.1809655115] [Citation(s) in RCA: 84] [Impact Index Per Article: 14.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
24
Sussman DM, Merkel M. No unjamming transition in a Voronoi model of biological tissue. Soft Matter 2018;14:3397-3403. [PMID: 29667689 DOI: 10.1039/c7sm02127e] [Citation(s) in RCA: 26] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
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