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He Y, Zhang K, Li S, Lu X, Zhao H, Guan C, Huang X, Shi Y, Kang Z, Fan Y, Li W, Chen C, Li G, Long O, Chen Y, Hu M, Cheng J, Xu B, Chapman MA, Georgiev MI, Fernie AR, Zhou M. Multiomics analysis reveals the molecular mechanisms underlying virulence in Rhizoctonia and jasmonic acid-mediated resistance in Tartary buckwheat (Fagopyrum tataricum). THE PLANT CELL 2023; 35:2773-2798. [PMID: 37119263 PMCID: PMC10396374 DOI: 10.1093/plcell/koad118] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2023] [Revised: 03/31/2023] [Accepted: 04/07/2023] [Indexed: 06/19/2023]
Abstract
Rhizoctonia solani is a devastating soil-borne pathogen that seriously threatens the cultivation of economically important crops. Multiple strains with a very broad host range have been identified, but only 1 (AG1-IA, which causes rice sheath blight disease) has been examined in detail. Here, we analyzed AG4-HGI 3 originally isolated from Tartary buckwheat (Fagopyrum tataricum), but with a host range comparable to AG1-IA. Genome comparison reveals abundant pathogenicity genes in this strain. We used multiomic approaches to improve the efficiency of screening for disease resistance genes. Transcriptomes of the plant-fungi interaction identified differentially expressed genes associated with virulence in Rhizoctonia and resistance in Tartary buckwheat. Integration with jasmonate-mediated transcriptome and metabolome changes revealed a negative regulator of jasmonate signaling, cytochrome P450 (FtCYP94C1), as increasing disease resistance probably via accumulation of resistance-related flavonoids. The integration of resistance data for 320 Tartary buckwheat accessions identified a gene homolog to aspartic proteinase (FtASP), with peak expression following R. solani inoculation. FtASP exhibits no proteinase activity but functions as an antibacterial peptide that slows fungal growth. This work reveals a potential mechanism behind pathogen virulence and host resistance, which should accelerate the molecular breeding of resistant varieties in economically essential crops.
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Affiliation(s)
- Yuqi He
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
- National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya 572024, China
| | - Kaixuan Zhang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Shijuan Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
- College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China
| | - Xiang Lu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
- College of Agriculture, Guizhou University, Guiyang 550025, China
| | - Hui Zhao
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Chaonan Guan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
- National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya 572024, China
| | - Xu Huang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Yaliang Shi
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Zhen Kang
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Yu Fan
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Wei Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Cheng Chen
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Guangsheng Li
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Ou Long
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Yuanyuan Chen
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Mang Hu
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
| | - Jianping Cheng
- College of Agriculture, Guizhou University, Guiyang 550025, China
| | - Bingliang Xu
- College of Plant Protection, Gansu Agricultural University, Lanzhou 730070, China
| | - Mark A Chapman
- Biological Sciences, University of Southampton, Southampton SO17 1BJ, UK
| | - Milen I Georgiev
- Laboratory of Metabolomics, Institute of Microbiology, Bulgarian Academy of Sciences, Plovdiv 4000, Bulgaria
- Center of Plant Systems Biology and Biotechnology, Plovdiv 4000, Bulgaria
| | - Alisdair R Fernie
- Center of Plant Systems Biology and Biotechnology, Plovdiv 4000, Bulgaria
- Department of Molecular Physiology, Max-Planck-Institute of Molecular Plant Physiology, Potsdam 14476, Germany
| | - Meiliang Zhou
- Institute of Crop Sciences, Chinese Academy of Agricultural Sciences, National Crop Gene Bank Building, Beijing 100081, China
- National Nanfan Research Institute, Chinese Academy of Agricultural Sciences, Sanya 572024, China
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Abstract
Root rot diseases remain a major global threat to the productivity of agricultural crops. They are usually caused by more than one type of pathogen and are thus often referred to as a root rot complex. Fungal and oomycete species are the predominant participants in the complex, while bacteria and viruses are also known to cause root rot. Incorporating genetic resistance in cultivated crops is considered the most efficient and sustainable solution to counter root rot, however, resistance is often quantitative in nature. Several genetics studies in various crops have identified the quantitative trait loci associated with resistance. With access to whole genome sequences, the identity of the genes within the reported loci is becoming available. Several of the identified genes have been implicated in pathogen responses. However, it is becoming apparent that at the molecular level, each pathogen engages a unique set of proteins to either infest the host successfully or be defeated or contained in attempting so. In this review, a comprehensive summary of the genes and the potential mechanisms underlying resistance or susceptibility against the most investigated root rots of important agricultural crops is presented.
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Wang Z, Wan L, Zhang X, Xin Q, Song Y, Hong D, Sun Y, Yang G. Interaction between Brassica napus polygalacturonase inhibition proteins and Sclerotinia sclerotiorum polygalacturonase: implications for rapeseed resistance to fungal infection. PLANTA 2021; 253:34. [PMID: 33459878 DOI: 10.1007/s00425-020-03556-2] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2020] [Accepted: 12/11/2020] [Indexed: 06/12/2023]
Abstract
BnPGIPs interacted with Sclerotinia sclerotiorum PGs to improve rapeseed SSR resistance at different levels; the BnPGIP-overexpression lines did not affect plant morphology or seed quality traits. Plant polygalacturonase-inhibiting proteins (PGIPs) play a crucial role in plant defence against phytopathogenic fungi by inhibiting fungal polygalacturonase (PG) activity. We overexpressed BnPGIP2, BnPGIP5, and BnPGIP10 genes in an inbred line 7492 of rapeseed (Brassica napus). Compared with 7492WT, the overexpression of BnPGIP2 lines significantly increased Sclerotinia sclerotiorum resistance in both seedlings and adult plants. BnPGIP5 overexpression lines exhibited decreased S. sclerotiorum disease symptoms in seedlings only, whereas BnPGIP10 overexpression lines did not improve Sclerotinia resistance for seedlings or adult plants. Quantitative real-time PCR analysis of S. sclerotiorum PG1, SsPG3, SsPG5, and SsPG6 genes in overexpressing BnPGIP lines showed that these pathogenic genes in the Sclerotinia resistance transgenic lines exhibited low expression in stem tissues. Split-luciferase complementation experiments confirmed the following: BnPGIP2 interacts with SsPG1 and SsPG6 but not with SsPG3 or SsPG5; BnPGIP5 interacts with SsPG3 and SsPG6 but not with SsPG1 or SsPG5; and BnPGIP10 interacts with SsPG1 but not SsPG3, SsPG5, or SsPG6. Leaf crude protein extracts from BnPGIP2 and BnPGIP5 transgenic lines displayed high inhibitory activity against the SsPG crude protein. BnPGIP-overexpression lines with Sclerotinia resistance displayed a lower accumulation of H2O2 and higher expression of the H2O2-removing gene BnAPX (ascorbate peroxidase) than 7492WT, as well as elevated expression of defence response genes including jasmonic acid/ethylene and salicylic acid pathways after S. sclerotiorum infection. The plants overexpressing BnPGIP exhibited no difference in either agronomic traits or grain yield from 7492WT. This study provides potential target genes for developing S. sclerotiorum resistance in rapeseed.
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Affiliation(s)
- Zhuanrong Wang
- Institute of Crops, Wuhan Academy of Agricultural Sciences, Wuhan, 430065, Hubei, China
| | - Lili Wan
- Institute of Crops, Wuhan Academy of Agricultural Sciences, Wuhan, 430065, Hubei, China.
| | - Xiaohui Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Qiang Xin
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yixian Song
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Dengfeng Hong
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
| | - Yuhong Sun
- Institute of Crops, Wuhan Academy of Agricultural Sciences, Wuhan, 430065, Hubei, China
| | - Guangsheng Yang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, 430070, Hubei, China
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Zheng H, Zhang Y, Li J, He L, Wang F, Bi Y, Gao J. Comparative transcriptome analysis between a resistant and a susceptible Chinese cabbage in response to Hyaloperonospora brassicae. PLANT SIGNALING & BEHAVIOR 2020; 15:1777373. [PMID: 32538253 PMCID: PMC8570763 DOI: 10.1080/15592324.2020.1777373] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Revised: 04/30/2020] [Accepted: 05/02/2020] [Indexed: 06/01/2023]
Abstract
Downy mildew caused by Hyaloperonosporabrassicae (H. brassicae) leads to up to 90% of the crop yield loss in Chinese cabbage in China. A transcriptome analysis was carried out between a resistant line (13-13, R) and a susceptible line (15-14, S) of Chinese cabbage in response to H. brassicae. The NOISeq method was used to find differentially expressed genes (DEGs) between these two groups and GO and KEGG were carried out to find R genes related to downy mildew response of Chinese cabbage. qRT-PCR was carried out to verify the reliability of RNA-seq expression data. A total of 3,055 DEGs were screened out from 41,020 genes and clustered into 6 groups with distinct expression patterns. A total of 87 candidate DEGs were identified by functional annotation based on GO and KEGG analysis. These candidate genes are involved in plant-pathogen interaction pathway, among which 54 and 33 DEGs were categorized into plant-pathogen interaction proteins and transcription factors, respectively. Proteins encoded by these genes have been reported to play an important role in the pattern-triggered immunity (PTI) and effector-triggered immunity (ETI) processes of disease responses in some model plants, such as Arabidopsis, rice, tobacco, and tomato. However, little is known about the mechanisms of these genes in resistance to downy mildew in Chinese cabbage. Our findings are useful for further characterization of these candidate genes and helpful in breeding resistant strains.
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Affiliation(s)
- Han Zheng
- College of Life Science, Shandong Normal University, Jinan, China
| | - Yihui Zhang
- College of Life Science, Shandong Normal University, Jinan, China
- Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Science, Jinan, China
| | - Jingjuan Li
- College of Life Science, Shandong Normal University, Jinan, China
- Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Science, Jinan, China
| | - Lilong He
- Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Science, Jinan, China
| | - Fengde Wang
- College of Life Science, Shandong Normal University, Jinan, China
- Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Science, Jinan, China
| | - Yuping Bi
- College of Life Science, Shandong Normal University, Jinan, China
- Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Science, Jinan, China
| | - Jianwei Gao
- College of Life Science, Shandong Normal University, Jinan, China
- Shandong Branch of National Vegetable Improvement Center, Institute of Vegetables and Flowers, Shandong Academy of Agricultural Science, Jinan, China
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Novel biotechnological strategies to combat biotic stresses: polygalacturonase inhibitor (PGIP) proteins as a promising comprehensive option. Appl Microbiol Biotechnol 2020; 104:2333-2342. [DOI: 10.1007/s00253-020-10396-3] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/13/2019] [Revised: 01/10/2020] [Accepted: 01/19/2020] [Indexed: 01/26/2023]
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Wu T, Peng C, Li B, Wu W, Kong L, Li F, Chu Z, Liu F, Ding X. OsPGIP1-Mediated Resistance to Bacterial Leaf Streak in Rice is Beyond Responsive to the Polygalacturonase of Xanthomonas oryzae pv. oryzicola. RICE (NEW YORK, N.Y.) 2019; 12:90. [PMID: 31832906 PMCID: PMC6908543 DOI: 10.1186/s12284-019-0352-4] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2019] [Accepted: 11/27/2019] [Indexed: 05/27/2023]
Abstract
Polygalacturonase-inhibiting proteins (PGIPs) have been shown to recognize fungal polygalacturonases (PGs), which initiate innate immunity in various plant species. Notably, the connection between rice OsPGIPs and PGs in Xanthomonas oryzae pv. oryzicola (Xoc), which causes bacterial leaf streak (BLS), remains unclear. Here, we show that OsPGIP1 was strongly induced after inoculating rice with the Xoc strain RS105. Furthermore, OsPGIP1-overexpressing (OV) and RNA interference (RNAi) rice lines increased and decreased, respectively, the resistance of rice to RS105, indicating that OsPGIP1 contributes to BLS resistance. Subsequently, we generated the unique PG mutant RS105Δpg, the virulence of which is attenuated compared to that of RS105. Surprisingly, the lesion lengths caused by RS105Δpg were similar to those caused by RS105 in the OV lines compared with wild-type ZH11 with reduced Xoc susceptibility. However, the lesion lengths caused by RS105Δpg were still significantly shorter in the OV lines than in ZH11, implying that OsPGIP1-mediated BLS resistance could respond to other virulence factors in addition to PGs. To explore the OsPGIP1-mediated resistance, RNA-seq analysis were performed and showed that many plant cell wall-associated genes and several MYB transcription factor genes were specifically expressed or more highly induced in the OV lines compared to ZH11 postinoculation with RS105. Consistent with the expression of the differentially expressed genes, the OV plants accumulated a higher content of jasmonic acid (JA) than ZH11 postinoculation with RS105, suggesting that the OsPGIP1-mediated resistance to BLS is mainly dependent on the plant cell wall-associated immunity and the JA signaling pathway.
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Affiliation(s)
- Tao Wu
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, 271018, Shandong, China
| | - Chune Peng
- College of Life Science, Shandong Agricultural University, Tai'an, 271018, Shandong, China
| | - Beibei Li
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, 271018, Shandong, China
| | - Wei Wu
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, 271018, Shandong, China
| | - Lingguang Kong
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, 271018, Shandong, China
| | - Fuchuan Li
- National Glycoengineering Research Center and State Key Laboratory of Microbial Technology, Shandong University, Jinan, 250100, Shandong, China
| | - Zhaohui Chu
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, 271018, Shandong, China.
- College of Agronomy, Shandong Agricultural University, Tai'an, 271018, Shandong, China.
| | - Fang Liu
- Key Laboratory of Oil Crop Biology of the Ministry of Agriculture, Chinese Academy of Agricultural Sciences, Oil Crops Research Institute, Wuhan, 430062, China
| | - Xinhua Ding
- State Key Laboratory of Crop Biology, College of Plant Protection, Shandong Agricultural University, Tai'an, 271018, Shandong, China.
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Green Production and Biotechnological Applications of Cell Wall Lytic Enzymes. APPLIED SCIENCES-BASEL 2019. [DOI: 10.3390/app9235012] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
: Energy demand is constantly growing, and, nowadays, fossil fuels still play a dominant role in global energy production, despite their negative effects on air pollution and the emission of greenhouse gases, which are the main contributors to global warming. An alternative clean source of energy is represented by the lignocellulose fraction of plant cell walls, the most abundant carbon source on Earth. To obtain biofuels, lignocellulose must be efficiently converted into fermentable sugars. In this regard, the exploitation of cell wall lytic enzymes (CWLEs) produced by lignocellulolytic fungi and bacteria may be considered as an eco-friendly alternative. These organisms evolved to produce a variety of highly specific CWLEs, even if in low amounts. For an industrial use, both the identification of novel CWLEs and the optimization of sustainable CWLE-expressing biofactories are crucial. In this review, we focus on recently reported advances in the heterologous expression of CWLEs from microbial and plant expression systems as well as some of their industrial applications, including the production of biofuels from agricultural feedstock and of value-added compounds from waste materials. Moreover, since heterologous expression of CWLEs may be toxic to plant hosts, genetic strategies aimed in converting such a deleterious effect into a beneficial trait are discussed.
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Zhu G, Liang E, Lan X, Li Q, Qian J, Tao H, Zhang M, Xiao N, Zuo S, Chen J, Gao Y. ZmPGIP3 Gene Encodes a Polygalacturonase-Inhibiting Protein that Enhances Resistance to Sheath Blight in Rice. PHYTOPATHOLOGY 2019; 109:1732-1740. [PMID: 31479403 DOI: 10.1094/phyto-01-19-0008-r] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2023]
Abstract
Plant polygalacturonase-inhibiting protein (PGIP) is a structural protein that can specifically recognize and bind to fungal polygalacturonase (PG). PGIP plays an important role in plant antifungal activity. In this study, a maize PGIP gene, namely ZmPGIP3, was cloned and characterized. Agarose diffusion assay suggested that ZmPGIP3 could inhibit the activity of PG. ZmPGIP3 expression was significantly induced by wounding, Rhizoctonia solani infection, jasmonate, and salicylic acid. ZmPGIP3 might be related to disease resistance. The gene encoding ZmPGIP3 was posed under the control of the ubiquitin promoter and constitutively expressed in transgenic rice. In an R. solani infection assay, ZmPGIP3 transgenic rice was more resistant to sheath blight than the wild-type rice regardless of the inoculated plant part (leaves or sheaths). Digital gene expression analysis indicated that the expression of some rice PGIP genes significantly increased in ZmPGIP3 transgenic rice, suggesting that ZmPGIP3 might activate the expression of some rice PGIP genes to resist sheath blight. Our investigation of the agronomic traits of ZmPGIP3 transgenic rice showed that ZmPGIP3 overexpression in rice did not show any detrimental phenotypic or agronomic effect. ZmPGIP3 is a promising candidate gene in the transgenic breeding for sheath blight resistance and crop improvement.
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Affiliation(s)
- Guang Zhu
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Enxing Liang
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Xiang Lan
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Qian Li
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Jingjie Qian
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Haixia Tao
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Mengjiao Zhang
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Ning Xiao
- Lixiahe Region Agricultural Scientific Research Institute of Jiangsu, Yangzhou 225009, Jiangsu, China
| | - Shimin Zuo
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Jianmin Chen
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
| | - Yong Gao
- Jiangsu Key Laboratories of Crop Genetics and Physiology and Plant Functional Genomics of the Ministry of Education, Co-Innovation Center for Modern Production Technology of Grain Crops of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
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Boccardo NA, Segretin ME, Hernandez I, Mirkin FG, Chacón O, Lopez Y, Borrás-Hidalgo O, Bravo-Almonacid FF. Expression of pathogenesis-related proteins in transplastomic tobacco plants confers resistance to filamentous pathogens under field trials. Sci Rep 2019; 9:2791. [PMID: 30808937 PMCID: PMC6391382 DOI: 10.1038/s41598-019-39568-6] [Citation(s) in RCA: 31] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/09/2018] [Accepted: 01/25/2019] [Indexed: 01/18/2023] Open
Abstract
Plants are continuously challenged by pathogens, affecting most staple crops compromising food security. They have evolved different mechanisms to counterattack pathogen infection, including the accumulation of pathogenesis-related (PR) proteins. These proteins have been implicated in active defense, and their overexpression has led to enhanced resistance in nuclear transgenic plants, although in many cases constitutive expression resulted in lesion-mimic phenotypes. We decided to evaluate plastid transformation as an alternative to overcome limitations observed for nuclear transgenic technologies. The advantages include the possibilities to express polycistronic RNAs, to obtain higher protein expression levels, and the impeded gene flow due to the maternal inheritance of the plastome. We transformed Nicotiana tabacum plastids to co-express the tobacco PR proteins AP24 and β-1,3-glucanase. Transplastomic tobacco lines were characterized and subsequently challenged with Rhizoctonia solani, Peronospora hyoscyami f.sp. tabacina and Phytophthora nicotianae. Results showed that transplastomic plants expressing AP24 and β-1,3-glucanase are resistant to R. solani in greenhouse conditions and, furthermore, they are protected against P.hyoscyami f.sp. tabacina and P. nicotianae in field conditions under high inoculum pressure. Our results suggest that plastid co- expression of PR proteins AP24 and β-1,3-glucanase resulted in enhanced resistance against filamentous pathogens.
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Affiliation(s)
- Noelia Ayelen Boccardo
- Laboratorio de Biotecnología Vegetal, Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres" (INGEBI-CONICET), (C1428ADN), Ciudad Autónoma de Buenos Aires, Argentina
| | - María Eugenia Segretin
- Laboratorio de Biotecnología Vegetal, Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres" (INGEBI-CONICET), (C1428ADN), Ciudad Autónoma de Buenos Aires, Argentina.
- Departamento de Fisiología, Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, (C1428EGA), Ciudad Autónoma de Buenos Aires, Argentina.
| | - Ingrid Hernandez
- Centro de Ingeniería Genética y Biotecnología (CIGB), (10600), La Habana, Cuba
| | - Federico Gabriel Mirkin
- Laboratorio de Biotecnología Vegetal, Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres" (INGEBI-CONICET), (C1428ADN), Ciudad Autónoma de Buenos Aires, Argentina
| | - Osmani Chacón
- Centro de Ingeniería Genética y Biotecnología (CIGB), (10600), La Habana, Cuba
| | - Yunior Lopez
- Centro de Ingeniería Genética y Biotecnología (CIGB), (10600), La Habana, Cuba
| | - Orlando Borrás-Hidalgo
- Centro de Ingeniería Genética y Biotecnología (CIGB), (10600), La Habana, Cuba
- Shandong Provincial Key Laboratory of Microbial Engineering, School of Biotechnology, Qi Lu University of Technology, Jinan, (250353), P.R. China
| | - Fernando Félix Bravo-Almonacid
- Laboratorio de Biotecnología Vegetal, Instituto de Investigaciones en Ingeniería Genética y Biología Molecular "Dr. Héctor N. Torres" (INGEBI-CONICET), (C1428ADN), Ciudad Autónoma de Buenos Aires, Argentina.
- Departamento de Ciencia y Tecnología, Universidad Nacional de Quilmes, Bernal, Buenos Aires, (B1876BXD), Argentina.
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10
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Wang Z, Wan L, Xin Q, Chen Y, Zhang X, Dong F, Hong D, Yang G. Overexpression of OsPGIP2 confers Sclerotinia sclerotiorum resistance in Brassica napus through increased activation of defense mechanisms. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:3141-3155. [PMID: 29648614 PMCID: PMC5972623 DOI: 10.1093/jxb/ery138] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/31/2017] [Accepted: 03/31/2018] [Indexed: 05/07/2023]
Abstract
Sclerotinia stem rot (SSR), caused by Sclerotinia sclerotiorum, is the most serious disease affecting the yield of the agriculturally and economically important crop Brassica napus (rapeseed). In this study, Oryza sativa polygalacturonase-inhibiting protein 2 (OsPGIP2) was found to effectively enhanced rapeseed immunity against S. sclerotiorum infection. Leaf extracts of B. napus plants overexpressing OsPGIP2 showed enhanced S. sclerotiorum resistance by delaying pathogen infection. The constitutive expression of OsPGIP2 in rapeseed plants provided a rapid and effective defense response, which included the production of reactive oxygen species, interactions with S. sclerotiorum polygalacturonases (SsPG3 and SsPG6), and effects on the expression of defense genes. RNA sequencing analysis revealed that the pathogen induced many differentially expressed genes associated with pathogen recognition, redox homeostasis, mitogen-activated protein kinase signaling cascades, hormone signaling pathways, pathogen-/defense-related genes, and cell wall-related genes. The overexpression of OsPGIP2 also led to constitutively increased cell wall cellulose and hemicellulose contents in stems without compromising seed quality. The results demonstrate that OsPGIP2 plays a major role in rapeseed defense mechanisms, and we propose a model for OsPGIP2-conferred resistance to S. sclerotiorum in these plants.
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Affiliation(s)
- Zhuanrong Wang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Lili Wan
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
- Institute of Crop, Wuhan Academy of Agricultural Sciences, Wuhan, Hubei, China
| | - Qiang Xin
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Ye Chen
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Xiaohui Zhang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Faming Dong
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Dengfeng Hong
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
| | - Guangsheng Yang
- National Key Laboratory of Crop Genetic Improvement, Huazhong Agricultural University, Wuhan, Hubei, China
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Silva MS, Arraes FBM, Campos MDA, Grossi-de-Sa M, Fernandez D, Cândido EDS, Cardoso MH, Franco OL, Grossi-de-Sa MF. Review: Potential biotechnological assets related to plant immunity modulation applicable in engineering disease-resistant crops. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2018; 270:72-84. [PMID: 29576088 DOI: 10.1016/j.plantsci.2018.02.013] [Citation(s) in RCA: 31] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2017] [Revised: 02/01/2018] [Accepted: 02/04/2018] [Indexed: 05/21/2023]
Abstract
This review emphasizes the biotechnological potential of molecules implicated in the different layers of plant immunity, including, pathogen-associated molecular pattern (PAMP)-triggered immunity (PTI), effector-triggered susceptibility (ETS), and effector-triggered immunity (ETI) that can be applied in the development of disease-resistant genetically modified (GM) plants. These biomolecules are produced by pathogens (viruses, bacteria, fungi, oomycetes) or plants during their mutual interactions. Biomolecules involved in the first layers of plant immunity, PTI and ETS, include inhibitors of pathogen cell-wall-degrading enzymes (CWDEs), plant pattern recognition receptors (PRRs) and susceptibility (S) proteins, while the ETI-related biomolecules include plant resistance (R) proteins. The biomolecules involved in plant defense PTI/ETI responses described herein also include antimicrobial peptides (AMPs), pathogenesis-related (PR) proteins and ribosome-inhibiting proteins (RIPs), as well as enzymes involved in plant defensive secondary metabolite biosynthesis (phytoanticipins and phytoalexins). Moreover, the regulation of immunity by RNA interference (RNAi) in GM disease-resistant plants is also considered. Therefore, the present review does not cover all the classes of biomolecules involved in plant innate immunity that may be applied in the development of disease-resistant GM crops but instead highlights the most common strategies in the literature, as well as their advantages and disadvantages.
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Affiliation(s)
- Marilia Santos Silva
- Embrapa Recursos Genéticos e Biotecnologia (Embrapa Cenargen), Brasília, DF, Brazil.
| | - Fabrício Barbosa Monteiro Arraes
- Embrapa Recursos Genéticos e Biotecnologia (Embrapa Cenargen), Brasília, DF, Brazil; Universidade Federal do Rio Grande do Sul (UFRGS), Post-Graduation Program in Molecular and Cellular Biology, Porto Alegre, RS, Brazil.
| | | | | | | | - Elizabete de Souza Cândido
- Universidade Católica de Brasília (UCB), Post-Graduation Program in Genomic Science and Biotechnology, Brasília, DF, Brazil; Universidade Católica Dom Bosco (UCDB), Campo Grande, MS, Brazil
| | - Marlon Henrique Cardoso
- Universidade Católica de Brasília (UCB), Post-Graduation Program in Genomic Science and Biotechnology, Brasília, DF, Brazil; Universidade Católica Dom Bosco (UCDB), Campo Grande, MS, Brazil; Universidade de Brasília (UnB), Brasilia, DF, Brazil
| | - Octávio Luiz Franco
- Universidade Católica de Brasília (UCB), Post-Graduation Program in Genomic Science and Biotechnology, Brasília, DF, Brazil; Universidade Católica Dom Bosco (UCDB), Campo Grande, MS, Brazil; Universidade de Brasília (UnB), Brasilia, DF, Brazil
| | - Maria Fátima Grossi-de-Sa
- Embrapa Recursos Genéticos e Biotecnologia (Embrapa Cenargen), Brasília, DF, Brazil; Universidade Federal do Rio Grande do Sul (UFRGS), Post-Graduation Program in Molecular and Cellular Biology, Porto Alegre, RS, Brazil; Universidade Católica de Brasília (UCB), Post-Graduation Program in Genomic Science and Biotechnology, Brasília, DF, Brazil; Universidade de Brasília (UnB), Brasilia, DF, Brazil.
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12
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Kong L, Qiu X, Kang J, Wang Y, Chen H, Huang J, Qiu M, Zhao Y, Kong G, Ma Z, Wang Y, Ye W, Dong S, Ma W, Wang Y. A Phytophthora Effector Manipulates Host Histone Acetylation and Reprograms Defense Gene Expression to Promote Infection. Curr Biol 2017; 27:981-991. [PMID: 28318979 DOI: 10.1016/j.cub.2017.02.044] [Citation(s) in RCA: 79] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2017] [Revised: 02/17/2017] [Accepted: 02/20/2017] [Indexed: 11/28/2022]
Abstract
Immune response during pathogen infection requires extensive transcription reprogramming. A fundamental mechanism of transcriptional regulation is histone acetylation. However, how pathogens interfere with this process to promote disease remains largely unknown. Here we demonstrate that the cytoplasmic effector PsAvh23 produced by the soybean pathogen Phytophthora sojae acts as a modulator of histone acetyltransferase (HAT) in plants. PsAvh23 binds to the ADA2 subunit of the HAT complex SAGA and disrupts its assembly by interfering with the association of ADA2 with the catalytic subunit GCN5. As such, PsAvh23 suppresses H3K9 acetylation mediated by the ADA2/GCN5 module and increases plant susceptibility. Expression of PsAvh23 or silencing of GmADA2/GmGCN5 resulted in misregulation of defense-related genes, most likely due to decreased H3K9 acetylation levels at the corresponding loci. This study highlights an effective counter-defense mechanism by which a pathogen effector suppresses the activation of defense genes by interfering with the function of the HAT complex during infection.
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Affiliation(s)
- Liang Kong
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Xufang Qiu
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Jiangang Kang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Yang Wang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Han Chen
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Jie Huang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Min Qiu
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Yao Zhao
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China; Department of Plant Pathology and Microbiology, University of California, Riverside, Riverside, CA 92521, USA
| | - Guanghui Kong
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Zhenchuan Ma
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China
| | - Yan Wang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China; The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China
| | - Wenwu Ye
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China; The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China
| | - Suomeng Dong
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China; The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.
| | - Wenbo Ma
- Department of Plant Pathology and Microbiology, University of California, Riverside, Riverside, CA 92521, USA
| | - Yuanchao Wang
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, Jiangsu 210095, China; The Key Laboratory of Integrated Management of Crop Diseases and Pests, Ministry of Education, Nanjing, Jiangsu 210095, China.
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Oliveira MB, de Andrade RV, Grossi-de-Sá MF, Petrofeza S. Analysis of genes that are differentially expressed during the Sclerotinia sclerotiorum-Phaseolus vulgaris interaction. Front Microbiol 2015; 6:1162. [PMID: 26579080 PMCID: PMC4620421 DOI: 10.3389/fmicb.2015.01162] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2015] [Accepted: 10/06/2015] [Indexed: 01/22/2023] Open
Abstract
The fungus Sclerotinia sclerotiorum (Lib.) de Bary, one of the most important plant pathogens, causes white mold on a wide range of crops. Crop yield can be dramatically decreased due to this disease, depending on the plant cultivar and environmental conditions. In this study, a suppression subtractive hybridization cDNA library approach was used for the identification of pathogen and plant genes that were differentially expressed during infection of the susceptible cultivar BRS Pérola of Phaseolus vulgaris L. A total of 979 unigenes (430 contigs and 549 singletons) were obtained and classified according to their functional categories. The transcriptional profile of 11 fungal genes related to pathogenicity and virulence were evaluated by reverse transcription quantitative real-time polymerase chain reaction (RT-qPCR). Additionally, the temporal expression profile obtained by RT-qPCR was evaluated for the following categories of plant defense-related genes: pathogenesis-related genes (PvPR1, PvPR2, and PvPR3), phenylpropanoid pathway genes (PvIsof, PvFPS1, and 4CL), and genes involved in defense and stress-related categories (PvLox, PvHiprp, PvGST, PvPod, and PvDox). Data obtained in this study provide a starting point for achieving a better understanding of the pathosystem S. sclerotiorum-P. vulgaris.
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Affiliation(s)
- Marília B. Oliveira
- Departamento de Bioquimica e Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de GoiásGoiânia, Brazil
| | - Rosângela V. de Andrade
- Programa de Pós-graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de BrasíliaBrasília, Brazil
| | - Maria F. Grossi-de-Sá
- Programa de Pós-graduação em Ciências Genômicas e Biotecnologia, Universidade Católica de BrasíliaBrasília, Brazil
- Embrapa Recursos Genéticos e Biotecnologia, Laboratório de Interação Molecular Planta-PragaBrasília, Brazil
| | - Silvana Petrofeza
- Departamento de Bioquimica e Biologia Molecular, Instituto de Ciências Biológicas, Universidade Federal de GoiásGoiânia, Brazil
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Oliveira MB, Junior ML, Grossi-de-Sá MF, Petrofeza S. Exogenous application of methyl jasmonate induces a defense response and resistance against Sclerotinia sclerotiorum in dry bean plants. JOURNAL OF PLANT PHYSIOLOGY 2015; 182:13-22. [PMID: 26037694 DOI: 10.1016/j.jplph.2015.04.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/04/2014] [Revised: 04/23/2015] [Accepted: 04/24/2015] [Indexed: 05/27/2023]
Abstract
Sclerotinia sclerotiorum (Lib.) de Bary is a necrotrophic fungal pathogen that causes a disease known as white mold, which is a major problem for dry bean (Phaseolus vulgaris L.) and other crops in many growing areas in Brazil. To investigate the role of methyl jasmonate (MeJA) in defending dry bean plants against S. sclerotiorum, we used suppression subtractive hybridization (SSH) of cDNA and identified genes that are differentially expressed during plant-pathogen interactions after treatment. Exogenous MeJA application enhanced resistance to the pathogen, and SSH analyses led to the identification of 94 unigenes, presumably involved in a variety of functions, which were classified into several functional categories, including metabolism, signal transduction, protein biogenesis and degradation, and cell defense and rescue. Using RT-qPCR, some unigenes were found to be differentially expressed in a time-dependent manner in dry bean plants during the interaction with S. sclerotiorum after MeJA treatment, including the pathogenesis-related protein PR3 (chitinase), PvCallose (callose synthase), PvNBS-LRR (NBS-LRR resistance-like protein), PvF-box (F-box family protein-like), and a polygalacturonase inhibitor protein (PGIP). Based on these expression data, the putative roles of differentially expressed genes were discussed in relation to the disease and MeJA resistance induction. Changes in the activity of the pathogenesis-related proteins β-1,3-glucanase, chitinase, phenylalanine ammonia-lyase, and peroxidase in plants after MeJA treatment and following inoculation of the pathogen were also investigated as molecular markers of induced resistance. Foliar application of MeJA induced partial resistance against S. sclerotiorum in plants as well as a consistent increase in pathogenesis-related protein activities. Our findings provide new insights into the physiological and molecular mechanisms of resistance induced by MeJA in the P. vulgaris-S. sclerotiorum pathosystem.
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Affiliation(s)
- Marília Barros Oliveira
- Instituto de Ciências Biológicas, Universidade Federal de Goiás, 74.001-940, Goiânia, GO, Brazil
| | - Murillo Lobo Junior
- Embrapa Arroz e Feijão, Caixa Postal 179, 75375-000 Santo Antônio de Goiás, GO, Brazil
| | - Maria Fátima Grossi-de-Sá
- Embrapa Recursos Genéticos e Biotecnologia, Laboratório de Interação Molecular Planta-Praga, W5 Norte, 70770-900 Brasília, DF, Brazil
| | - Silvana Petrofeza
- Instituto de Ciências Biológicas, Universidade Federal de Goiás, 74.001-940, Goiânia, GO, Brazil.
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15
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Plant immunity triggered by engineered in vivo release of oligogalacturonides, damage-associated molecular patterns. Proc Natl Acad Sci U S A 2015; 112:5533-8. [PMID: 25870275 DOI: 10.1073/pnas.1504154112] [Citation(s) in RCA: 133] [Impact Index Per Article: 14.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Oligogalacturonides (OGs) are fragments of pectin that activate plant innate immunity by functioning as damage-associated molecular patterns (DAMPs). We set out to test the hypothesis that OGs are generated in planta by partial inhibition of pathogen-encoded polygalacturonases (PGs). A gene encoding a fungal PG was fused with a gene encoding a plant polygalacturonase-inhibiting protein (PGIP) and expressed in transgenic Arabidopsis plants. We show that expression of the PGIP-PG chimera results in the in vivo production of OGs that can be detected by mass spectrometric analysis. Transgenic plants expressing the chimera under control of a pathogen-inducible promoter are more resistant to the phytopathogens Botrytis cinerea, Pectobacterium carotovorum, and Pseudomonas syringae. These data provide strong evidence for the hypothesis that OGs released in vivo act as a DAMP signal to trigger plant immunity and suggest that controlled release of these molecules upon infection may be a valuable tool to protect plants against infectious diseases. On the other hand, elevated levels of expression of the chimera cause the accumulation of salicylic acid, reduced growth, and eventually lead to plant death, consistent with the current notion that trade-off occurs between growth and defense.
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16
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Matsaunyane LB, Oelofse D, Dubery IA. In silico analysis of the polygalacturonase inhibiting protein 1 from apple, Malus domestica. BMC Res Notes 2015; 8:76. [PMID: 25889420 PMCID: PMC4367963 DOI: 10.1186/s13104-015-1025-z] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/20/2014] [Accepted: 02/20/2015] [Indexed: 11/14/2022] Open
Abstract
Background The Malus domestica polygalacturonase inhibiting protein 1 (MdPGIP1) gene, encoding the M. domestica polygalacturonase inhibiting protein 1 (MdPGIP1), was isolated from the Granny Smith apple cultivar (GenBank accession no. DQ185063). The gene was used to transform tobacco and potato for enhanced resistance against fungal diseases. Findings Analysis of the MdPGIP1 nucleotide sequence revealed that the gene comprises 993 nucleotides that encode a 330 amino acid polypeptide. In silico characterization of the MdPGIP1 polypeptide revealed domains typical of PGIP proteins, which include a 24 amino acid putative signal peptide, a potential cleavage site [Alanine-Leucine-Serine (ALS)] for the signal peptide, a 238 amino acid leucine-rich repeat (LRR) domain, a 46 amino acid N-terminal domain and a 22 amino acid C-terminal domain. The hydropathic evaluation of MdPGIP1 indicated a repetitive hydrophobic motif in the LRR domain and a hydrophilic surface area consistent with a globular protein. The typical consensus glycosylation sequence of Asn-X-Ser/Thr was identified in MdPGIP1, indicating potential N-linked glycosylation of MdPGIP1. The molecular mass of non-glycosylated MdPGIP1 was calculated as 36.615 kDa and the theoretical isoelectric point as 6.98. Furthermore, the secondary and tertiary structure of MdPGIP1 was modelled, and revealed that MdPGIP1 is a curved and elongated molecule that contains sheet B1, sheet B2 and 310-helices on its LRR domain. Conclusion The overall properties of the MdPGIP1 protein is similar to that of the prototypical Phaseolus vulgaris PGIP 2 (PvPGIP2), and the detected differences supported its use in biotechnological applications as an inhibitor of targeted fungal polygalacturonases (PGs).
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Affiliation(s)
- Lerato Bt Matsaunyane
- Agricultural Research Council - Vegetable and Ornamental Plant Institute (ARC-VOPI), Roodeplaat, Pretoria, South Africa. .,Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, 2006, South Africa.
| | - Dean Oelofse
- Agricultural Research Council - Vegetable and Ornamental Plant Institute (ARC-VOPI), Roodeplaat, Pretoria, South Africa.
| | - Ian A Dubery
- Department of Biochemistry, University of Johannesburg, P.O. Box 524, Auckland Park, 2006, South Africa.
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17
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Kalunke RM, Tundo S, Benedetti M, Cervone F, De Lorenzo G, D'Ovidio R. An update on polygalacturonase-inhibiting protein (PGIP), a leucine-rich repeat protein that protects crop plants against pathogens. FRONTIERS IN PLANT SCIENCE 2015; 6:146. [PMID: 25852708 PMCID: PMC4367531 DOI: 10.3389/fpls.2015.00146] [Citation(s) in RCA: 81] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/05/2015] [Accepted: 02/23/2015] [Indexed: 05/20/2023]
Abstract
Polygalacturonase inhibiting proteins (PGIPs) are cell wall proteins that inhibit the pectin-depolymerizing activity of polygalacturonases secreted by microbial pathogens and insects. These ubiquitous inhibitors have a leucine-rich repeat structure that is strongly conserved in monocot and dicot plants. Previous reviews have summarized the importance of PGIP in plant defense and the structural basis of PG-PGIP interaction; here we update the current knowledge about PGIPs with the recent findings on the composition and evolution of pgip gene families, with a special emphasis on legume and cereal crops. We also update the information about the inhibition properties of single pgip gene products against microbial PGs and the results, including field tests, showing the capacity of PGIP to protect crop plants against fungal, oomycetes and bacterial pathogens.
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Affiliation(s)
- Raviraj M. Kalunke
- Dipartimento di Scienze e Tecnologie per l'Agricoltura, le Foreste, la Natura e l'Energia, Università della TusciaViterbo, Italy
| | - Silvio Tundo
- Dipartimento di Scienze e Tecnologie per l'Agricoltura, le Foreste, la Natura e l'Energia, Università della TusciaViterbo, Italy
| | - Manuel Benedetti
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di RomaRoma, Italy
| | - Felice Cervone
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di RomaRoma, Italy
| | - Giulia De Lorenzo
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di RomaRoma, Italy
- Giulia De Lorenzo, Dipartimento di Biologia e Biotecnologie “Charles Darwin,” Sapienza Università di Roma, Roma, Italy
| | - Renato D'Ovidio
- Dipartimento di Scienze e Tecnologie per l'Agricoltura, le Foreste, la Natura e l'Energia, Università della TusciaViterbo, Italy
- *Correspondence: Renato D'Ovidio, Dipartimento di Scienze e Tecnologie per l'Agricoltura, le Foreste, la Natura e l'Energia, Università Degli Studi Della Tuscia, 01100 Viterbo, Italy
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18
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Kalunke RM, Cenci A, Volpi C, O’Sullivan DM, Sella L, Favaron F, Cervone F, De Lorenzo G, D’Ovidio R. The pgip family in soybean and three other legume species: evidence for a birth-and-death model of evolution. BMC PLANT BIOLOGY 2014; 14:189. [PMID: 25034494 PMCID: PMC4115169 DOI: 10.1186/s12870-014-0189-3] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/03/2014] [Accepted: 07/14/2014] [Indexed: 05/22/2023]
Abstract
BACKGROUND Polygalacturonase-inhibiting proteins (PGIPs) are leucine-rich repeat (LRR) plant cell wall glycoproteins involved in plant immunity. They are typically encoded by gene families with a small number of gene copies whose evolutionary origin has been poorly investigated. Here we report the complete characterization of the full complement of the pgip family in soybean (Glycine max [L.] Merr.) and the characterization of the genomic region surrounding the pgip family in four legume species. RESULTS BAC clone and genome sequence analyses showed that the soybean genome contains two pgip loci. Each locus is composed of three clustered genes that are induced following infection with the fungal pathogen Sclerotinia sclerotiorum (Lib.) de Bary, and remnant sequences of pgip genes. The analyzed homeologous soybean genomic regions (about 126 Kb) that include the pgip loci are strongly conserved and this conservation extends also to the genomes of the legume species Phaseolus vulgaris L., Medicago truncatula Gaertn. and Cicer arietinum L., each containing a single pgip locus. Maximum likelihood-based gene trees suggest that the genes within the pgip clusters have independently undergone tandem duplication in each species. CONCLUSIONS The paleopolyploid soybean genome contains two pgip loci comprised in large and highly conserved duplicated regions, which are also conserved in bean, M. truncatula and C. arietinum. The genomic features of these legume pgip families suggest that the forces driving the evolution of pgip genes follow the birth-and-death model, similar to that proposed for the evolution of resistance (R) genes of NBS-LRR-type.
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Affiliation(s)
- Raviraj M Kalunke
- Dipartimento di Scienze e tecnologie per l’Agricoltura, le Foreste, la Natura e l’Energia, (DAFNE), Università della Tuscia, Via S. Camillo de Lellis snc, Viterbo, Italy
| | - Alberto Cenci
- Bioversity International, Commodity systems & genetic resources programme, Parc Scientifique Agropolis II, 1990 Boulevard de la Lironde, Montpellier Cedex 5, 34397, France
| | - Chiara Volpi
- Dipartimento di Scienze e tecnologie per l’Agricoltura, le Foreste, la Natura e l’Energia, (DAFNE), Università della Tuscia, Via S. Camillo de Lellis snc, Viterbo, Italy
- Present address: Enza Zaden Italia Research SRL, S.S. Aurelia km 96.710, Tarquinia (VT), 01016, Italy
| | - Donal M O’Sullivan
- NIAB, Huntingdon Road, Cambridge CB3 0LE, UK
- Present address: School of Agriculture, Policy and Development, University of Reading, Whiteknights, Reading RG6 6AR, UK
| | - Luca Sella
- Dipartimento Territorio e Sistemi agro-forestali (TESAF), Università di Padova, Agripolis, Viale dell’Università 16, Legnaro (PD), 35020, Italy
| | - Francesco Favaron
- Dipartimento Territorio e Sistemi agro-forestali (TESAF), Università di Padova, Agripolis, Viale dell’Università 16, Legnaro (PD), 35020, Italy
| | - Felice Cervone
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Piazzale Aldo Moro, 5, Roma, 00185, Italy
| | - Giulia De Lorenzo
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Piazzale Aldo Moro, 5, Roma, 00185, Italy
| | - Renato D’Ovidio
- Dipartimento di Scienze e tecnologie per l’Agricoltura, le Foreste, la Natura e l’Energia, (DAFNE), Università della Tuscia, Via S. Camillo de Lellis snc, Viterbo, Italy
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19
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Volpi C, Raiola A, Janni M, Gordon A, O'Sullivan DM, Favaron F, D'Ovidio R. Claviceps purpurea expressing polygalacturonases escaping PGIP inhibition fully infects PvPGIP2 wheat transgenic plants but its infection is delayed in wheat transgenic plants with increased level of pectin methyl esterification. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2013; 73:294-301. [PMID: 24184449 DOI: 10.1016/j.plaphy.2013.10.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/19/2013] [Accepted: 10/10/2013] [Indexed: 05/21/2023]
Abstract
Claviceps purpurea is a biotrophic fungal pathogen of grasses causing the ergot disease. The infection process of C. purpurea on rye flowers is accompanied by pectin degradation and polygalacturonase (PG) activity represents a pathogenicity factor. Wheat is also infected by C. purpurea and we tested whether the presence of polygalacturonase inhibiting protein (PGIP) can affect pathogen infection and ergot disease development. Wheat transgenic plants expressing the bean PvPGIP2 did not show a clear reduction of disease symptoms when infected with C. purpurea. To ascertain the possible cause underlying this lack of improved resistance of PvPGIP2 plants, we expressed both polygalacturonases present in the C. purpurea genome, cppg1 and cppg2 in Pichia pastoris. In vitro assays using the heterologous expressed PGs and PvPGIP2 showed that neither PG is inhibited by this inhibitor. To further investigate the role of PG in the C. purpurea/wheat system, we demonstrated that the activity of both PGs of C. purpurea is reduced on highly methyl esterified pectin. Finally, we showed that this reduction in PG activity is relevant in planta, by inoculating with C. purpurea transgenic wheat plants overexpressing a pectin methyl esterase inhibitor (PMEI) and showing a high degree of pectin methyl esterification. We observed reduced disease symptoms in the transgenic line compared with null controls. Together, these results highlight the importance of pectin degradation for ergot disease development in wheat and sustain the notion that inhibition of pectin degradation may represent a possible route to control of ergot in cereals.
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Affiliation(s)
- Chiara Volpi
- Dipartimento di Scienze e tecnologie per l'Agricoltura, le Foreste, la Natura e l'Energia (DAFNE), Università della Tuscia, Via S. Camillo de Lellis snc, 01100 Viterbo, Italy
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20
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Benedetti M, Andreani F, Leggio C, Galantini L, Di Matteo A, Pavel NV, De Lorenzo G, Cervone F, Federici L, Sicilia F. A single amino-acid substitution allows endo-polygalacturonase of Fusarium verticillioides to acquire recognition by PGIP2 from Phaseolus vulgaris. PLoS One 2013; 8:e80610. [PMID: 24260434 DOI: 10.1371/10.1371/journal.pone.0080610] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2013] [Accepted: 10/12/2013] [Indexed: 05/25/2023] Open
Abstract
Polygalacturonases (PGs) are secreted by phytopathogenic fungi to degrade the plant cell wall homogalacturonan during plant infection. To counteract Pgs, plants have evolved polygalacturonase-inhibiting proteins (PGIPs) that slow down fungal infection and defend cell wall integrity. PGIPs favour the accumulation of oligogalacturonides, which are homogalacturonan fragments that act as endogenous elicitors of plant defence responses. We have previously shown that PGIP2 from Phaseolus vulgaris (PvPGIP2) forms a complex with PG from Fusarium phyllophilum (FpPG), hindering the enzyme active site cleft from substrate. Here we analyse by small angle X-ray scattering (SAXS) the interaction between PvPGIP2 and a PG from Colletotrichum lupini (CluPG1). We show a different shape of the PG-PGIP complex, which allows substrate entry and provides a structural explanation for the different inhibition kinetics exhibited by PvPGIP2 towards the two isoenzymes. The analysis of SAXS structures allowed us to investigate the basis of the inability of PG from Fusarium verticilloides (FvPG) to be inhibited by PvPGIP2 or by any other known PGIP. FvPG is 92.5% identical to FpPG, and we show here, by both loss- and gain-of-function mutations, that a single amino acid site acts as a switch for FvPG recognition by PvPGIP2.
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Affiliation(s)
- Manuel Benedetti
- Dipartimento di Biologia e Biotecnologie "Charles Darwin", Sapienza Università di Roma, Roma, Italy
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Benedetti M, Andreani F, Leggio C, Galantini L, Di Matteo A, Pavel NV, De Lorenzo G, Cervone F, Federici L, Sicilia F. A single amino-acid substitution allows endo-polygalacturonase of Fusarium verticillioides to acquire recognition by PGIP2 from Phaseolus vulgaris. PLoS One 2013; 8:e80610. [PMID: 24260434 PMCID: PMC3834070 DOI: 10.1371/journal.pone.0080610] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/15/2013] [Accepted: 10/12/2013] [Indexed: 12/04/2022] Open
Abstract
Polygalacturonases (PGs) are secreted by phytopathogenic fungi to degrade the plant cell wall homogalacturonan during plant infection. To counteract Pgs, plants have evolved polygalacturonase-inhibiting proteins (PGIPs) that slow down fungal infection and defend cell wall integrity. PGIPs favour the accumulation of oligogalacturonides, which are homogalacturonan fragments that act as endogenous elicitors of plant defence responses. We have previously shown that PGIP2 from Phaseolus vulgaris (PvPGIP2) forms a complex with PG from Fusarium phyllophilum (FpPG), hindering the enzyme active site cleft from substrate. Here we analyse by small angle X-ray scattering (SAXS) the interaction between PvPGIP2 and a PG from Colletotrichum lupini (CluPG1). We show a different shape of the PG-PGIP complex, which allows substrate entry and provides a structural explanation for the different inhibition kinetics exhibited by PvPGIP2 towards the two isoenzymes. The analysis of SAXS structures allowed us to investigate the basis of the inability of PG from Fusarium verticilloides (FvPG) to be inhibited by PvPGIP2 or by any other known PGIP. FvPG is 92.5% identical to FpPG, and we show here, by both loss- and gain-of-function mutations, that a single amino acid site acts as a switch for FvPG recognition by PvPGIP2.
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Affiliation(s)
- Manuel Benedetti
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Roma, Italy
| | - Federico Andreani
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Roma, Italy
| | - Claudia Leggio
- Dipartimento di Chimica, Sapienza Università di Roma, Roma, Italy
| | | | - Adele Di Matteo
- Istituto di Biologia e Patologia Molecolari, Consiglio Nazionale delle Ricerche, Roma, Italy
| | | | - Giulia De Lorenzo
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Roma, Italy
| | - Felice Cervone
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Roma, Italy
| | - Luca Federici
- Dipartimento di Scienze Sperimentali e Cliniche and Centro Scienze dell’Invecchiamento, Università di Chieti-Pescara “G. d’ Annunzio”, Chieti, Italy
| | - Francesca Sicilia
- Dipartimento di Biologia e Biotecnologie “Charles Darwin”, Sapienza Università di Roma, Roma, Italy
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Chai C, Lin Y, Shen D, Wu Y, Li H, Dou D. Identification and functional characterization of the soybean GmaPPO12 promoter conferring Phytophthora sojae induced expression. PLoS One 2013; 8:e67670. [PMID: 23840763 PMCID: PMC3695865 DOI: 10.1371/journal.pone.0067670] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2013] [Accepted: 05/26/2013] [Indexed: 01/13/2023] Open
Abstract
Identification of pathogen-inducible promoters largely lags behind cloning of the genes for disease resistance. Here, we cloned the soybean GmaPPO12 gene and found that it was rapidly and strongly induced by Phytophthorasojae infection. Computational analysis revealed that its promoter contained many known cis-elements, including several defense related transcriptional factor-binding boxes. We showed that the promoter could mediate induction of GUS expression upon infection in both transient expression assays in Nicotianabenthamiana and stable transgenic soybean hairy roots. Importantly, we demonstrated that pathogen-induced expression of the GmaPPO12 promoter was higher than that of the soybean GmaPR1a promoter. A progressive 5' and 3' deletion analysis revealed two fragments that were essential for promoter activity. Thus, the cloned promoter could be used in transgenic plants to enhance resistance to phytophthora pathogens, and the identified fragment could serve as a candidate to produce synthetic pathogen-induced promoters.
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Affiliation(s)
- Chunyue Chai
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
- College of Life Science and Technology, Nanyang Normal University, Nanyang, China
| | - Yanling Lin
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Danyu Shen
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Yuren Wu
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Hongjuan Li
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
| | - Daolong Dou
- Department of Plant Pathology, Nanjing Agricultural University, Nanjing, China
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