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For: Shen LY, Luo H, Wang XL, Wang XM, Qiu XJ, Liu H, Zhou SS, Jia KH, Nie S, Bao YT, Zhang RG, Yun QZ, Chai YH, Lu JY, Li Y, Zhao SW, Mao JF, Jia SG, Mao YM. Chromosome-Scale Genome Assembly for Chinese Sour Jujube and Insights Into Its Genome Evolution and Domestication Signature. Front Plant Sci 2021;12:773090. [PMID: 34899800 PMCID: PMC8652243 DOI: 10.3389/fpls.2021.773090] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Accepted: 10/18/2021] [Indexed: 05/03/2023]
Number Cited by Other Article(s)
1
Yao J, Qiao Z, Jiang Z, Zhao X, You Z, Zhang W, Feng J, Gong C, Li J. Infection with Jujube Witches' Broom Phytoplasma Alters the Expression Pattern of the Argonaute Gene Family in Ziziphus jujuba. Microorganisms 2025;13:658. [PMID: 40142550 PMCID: PMC11944418 DOI: 10.3390/microorganisms13030658] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2025] [Revised: 03/01/2025] [Accepted: 03/11/2025] [Indexed: 03/28/2025]  Open
2
Guo M, Lian Q, Mei Y, Yang W, Zhao S, Zhang S, Xing X, Zhang H, Gao K, He W, Wang Z, Wang H, Zhou J, Cheng L, Bao Z, Huang S, Yan J, Zhao X. Analyzes of pan-genome and resequencing atlas unveil the genetic basis of jujube domestication. Nat Commun 2024;15:9320. [PMID: 39472552 PMCID: PMC11522667 DOI: 10.1038/s41467-024-53718-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2024] [Accepted: 10/21/2024] [Indexed: 11/02/2024]  Open
3
Li J, Wang B, Zhang L, Ma Y, Song L, Cao B. Genome-wide study of drought tolerance traits in wild jujube. BMC PLANT BIOLOGY 2024;24:1000. [PMID: 39448934 PMCID: PMC11520188 DOI: 10.1186/s12870-024-05680-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/14/2024] [Accepted: 10/08/2024] [Indexed: 10/26/2024]
4
Wei T, Li H, Huang X, Yang P. Chromosome-level genome assembly of two cultivated Jujubes. Sci Data 2024;11:1144. [PMID: 39420037 PMCID: PMC11486999 DOI: 10.1038/s41597-024-03992-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Accepted: 10/11/2024] [Indexed: 10/19/2024]  Open
5
Miao K, Wang Y, Hou L, Liu Y, Liu H, Ji Y. Haplotype-resolved genome assembly of the upas tree (Antiaris toxicaria). Sci Data 2024;11:1011. [PMID: 39294147 PMCID: PMC11410980 DOI: 10.1038/s41597-024-03860-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2024] [Accepted: 09/04/2024] [Indexed: 09/20/2024]  Open
6
Jo J, Park JS, Won H, Jeong JS, Jung TW, Lee KJ, Lee SA. The first Chromosomal-level genome assembly of Sageretia thea using Nanopore long reads and Pore-C technology. Sci Data 2024;11:959. [PMID: 39242678 PMCID: PMC11379895 DOI: 10.1038/s41597-024-03798-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/13/2024] [Accepted: 08/19/2024] [Indexed: 09/09/2024]  Open
7
Satterlee JW, Alonso D, Gramazio P, Jenike KM, He J, Arrones A, Villanueva G, Plazas M, Ramakrishnan S, Benoit M, Gentile I, Hendelman A, Shohat H, Fitzgerald B, Robitaille GM, Green Y, Swartwood K, Passalacqua MJ, Gagnon E, Hilgenhof R, Huggins TD, Eizenga GC, Gur A, Rutten T, Stein N, Yao S, Poncet A, Bellot C, Frary A, Knapp S, Bendahmane M, Särkinen T, Gillis J, Van Eck J, Schatz MC, Eshed Y, Prohens J, Vilanova S, Lippman ZB. Convergent evolution of plant prickles by repeated gene co-option over deep time. Science 2024;385:eado1663. [PMID: 39088611 PMCID: PMC11305333 DOI: 10.1126/science.ado1663] [Citation(s) in RCA: 18] [Impact Index Per Article: 18.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2024] [Accepted: 06/06/2024] [Indexed: 08/03/2024]
8
Li X, Chen Y, Zhang Z, He Q, Tian T, Jiao Y, Cao L. Genome-wide identification of starch phosphorylase gene family in Rosa chinensis and expression in response to abiotic stress. Sci Rep 2024;14:13917. [PMID: 38886497 PMCID: PMC11183051 DOI: 10.1038/s41598-024-64937-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/14/2024] [Accepted: 06/14/2024] [Indexed: 06/20/2024]  Open
9
Li K, Chen R, Abudoukayoumu A, Wei Q, Ma Z, Wang Z, Hao Q, Huang J. Haplotype-resolved T2T reference genomes for wild and domesticated accessions shed new insights into the domestication of jujube. HORTICULTURE RESEARCH 2024;11:uhae071. [PMID: 38725458 PMCID: PMC11079485 DOI: 10.1093/hr/uhae071] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/29/2023] [Accepted: 02/28/2024] [Indexed: 05/12/2024]
10
Shao L, Qiao P, Wang J, Peng Y, Wang Y, Dong W, Li J. Comparative analysis of jujube and sour jujube gave insight into their difference in genetic diversity and suitable habitat. Front Genet 2024;15:1322285. [PMID: 38380425 PMCID: PMC10878421 DOI: 10.3389/fgene.2024.1322285] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2023] [Accepted: 01/16/2024] [Indexed: 02/22/2024]  Open
11
Yang M, Han L, Zhang S, Dai L, Li B, Han S, Zhao J, Liu P, Zhao Z, Liu M. Insights into the evolution and spatial chromosome architecture of jujube from an updated gapless genome assembly. PLANT COMMUNICATIONS 2023;4:100662. [PMID: 37482683 PMCID: PMC10777365 DOI: 10.1016/j.xplc.2023.100662] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 07/17/2023] [Accepted: 07/20/2023] [Indexed: 07/25/2023]
12
Li B, Muhammad N, Zhang S, Lan Y, Yang Y, Han S, Liu M, Yang M. Multiple-Genome-Based Simple Sequence Repeat Is an Efficient and Successful Method in Genotyping and Classifying Different Jujube Germplasm Resources. PLANTS (BASEL, SWITZERLAND) 2023;12:2885. [PMID: 37571038 PMCID: PMC10421302 DOI: 10.3390/plants12152885] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Revised: 07/23/2023] [Accepted: 08/03/2023] [Indexed: 08/13/2023]
13
Zhang Y, Niu N, Li S, Liu Y, Xue C, Wang H, Liu M, Zhao J. Virus-Induced Gene Silencing (VIGS) in Chinese Jujube. PLANTS (BASEL, SWITZERLAND) 2023;12:plants12112115. [PMID: 37299093 DOI: 10.3390/plants12112115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Revised: 05/23/2023] [Accepted: 05/23/2023] [Indexed: 06/12/2023]
14
Yang M, Ma Y, Si X, Liu X, Geng X, Wen X, Li G, Zhang L, Yang C, Zhang Z. Analysis of the Glycoside Hydrolase Family 1 from Wild Jujube Reveals Genes Involved in the Degradation of Jujuboside A. Genes (Basel) 2023;14:1135. [PMID: 37372316 DOI: 10.3390/genes14061135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 05/17/2023] [Accepted: 05/19/2023] [Indexed: 06/29/2023]  Open
15
Jiao Y, Li X, Huang X, Liu F, Zhang Z, Cao L. The Identification of SQS/SQE/OSC Gene Families in Regulating the Biosynthesis of Triterpenes in Potentilla anserina. Molecules 2023;28:2782. [PMID: 36985754 PMCID: PMC10051230 DOI: 10.3390/molecules28062782] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/08/2023] [Revised: 03/14/2023] [Accepted: 03/15/2023] [Indexed: 03/30/2023]  Open
16
Du S, Hu X, Guo Y, Wang S, Yang X, Wu Z, Huang Y. A comparative plastomic analysis of Ziziphus jujuba var. spinosa (Bunge) Hu ex H. F. Chow and implication of the origin of Chinese jujube. AOB PLANTS 2023;15:plad006. [PMID: 37025103 PMCID: PMC10071050 DOI: 10.1093/aobpla/plad006] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/25/2022] [Accepted: 02/17/2023] [Indexed: 06/19/2023]
17
Zhang C, Geng Y, Liu H, Wu M, Bi J, Wang Z, Dong X, Li X. Low-acidity ALUMINUM-DEPENDENT MALATE TRANSPORTER4 genotype determines malate content in cultivated jujube. PLANT PHYSIOLOGY 2023;191:414-427. [PMID: 36271866 PMCID: PMC9806563 DOI: 10.1093/plphys/kiac491] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2022] [Accepted: 10/05/2022] [Indexed: 06/16/2023]
18
Wang W, Zhang Z, Li X. Identification and expression analysis of BURP domain-containing genes in jujube and their involvement in low temperature and drought response. BMC Genomics 2022;23:692. [PMID: 36203136 PMCID: PMC9541082 DOI: 10.1186/s12864-022-08907-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2022] [Accepted: 09/26/2022] [Indexed: 11/17/2022]  Open
19
Ma Z, Zhao X, He A, Cao Y, Han Q, Lu Y, Yong JWH, Huang J. Mycorrhizal symbiosis reprograms ion fluxes and fatty acid metabolism in wild jujube during salt stress. PLANT PHYSIOLOGY 2022;189:2481-2499. [PMID: 35604107 PMCID: PMC9342988 DOI: 10.1093/plphys/kiac239] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2022] [Accepted: 04/30/2022] [Indexed: 05/25/2023]
20
Du S, Hu X, Yang X, Yu W, Wang Z. Genetic diversity and population dynamic of Ziziphus jujuba var. spinosa (Bunge) Hu ex H. F. Chow in Central China. Ecol Evol 2022;12:e9101. [PMID: 35898427 PMCID: PMC9309028 DOI: 10.1002/ece3.9101] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/07/2022] [Revised: 06/04/2022] [Accepted: 06/23/2022] [Indexed: 11/09/2022]  Open
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