Bioorganic fertilizer promotes pakchoi growth and shapes the soil microbial structure

Microbial fertilizers modulate tobacco growth and development through reshaping soil microbiome and metabolome

To elucidate the mechanisms of microbial fertilizers in enhancing tobacco growth and quality, this greenhouse-based pot experiment conducted over 40 days post-transplanting employed integrated microbiomics and metabolomics approaches to conduct a comparative analysis among conventional chemical, organic, and microbial fertilizers. Plant agronomic traits were systematically assessed at 20, 30, and 40 days post-transplanting, while soil physicochemical parameters were analyzed at the experimental terminus (40 days). The findings underscored the remarkable potential of microbial fertilizers in augmenting soil's quick-release nutrient pool and bolstering soil enzymatic activity, surpassing both chemical and organic counterparts. The application of microbial fertilizers accelerated tobacco growth and development, and significantly elevated agronomic indices, including plant stature, stem girth, leaf extension, and the abundance of aromatic precursors, thereby facilitating a marked improvement in tobacco leaf quality. Furthermore, the microbial community composition underwent pronounced alterations subsequent to the application of microbial fertilizers, with the emergence of pivotal microorganisms such as Rhodanobacter and Pseudolabrys within the treatment group. These microorganisms emerged as vital players in nutrient cycling processes, fostered plant growth, and mitigated the incidence of plant diseases. Microbial fertilizers demonstrated a significantly superior capacity to stimulate metabolic vigor in tobacco plants compared to other treatments, concomitant with a substantial enrichment of several metabolites, such as 3-methylindole. These data collectively imply that microbial fertilizers represent a more efficacious means of ameliorating soil physicochemical attributes, thereby fostering superior tobacco growth, development, and quality enhancement.IMPORTANCEIn recent years, there has been a surge in research examining the impacts of various fertilizers on the microbial composition of tobacco rhizosphere soils, and numerous studies have consecutively reported the growth-promoting mechanisms of diverse fertilizers on tobacco plants. However, despite these advancements, the existing body of literature remains inadequate in conclusively demonstrating the superiority of microbial fertilizers over traditional organic and inorganic fertilizers in tobacco cultivation. Consequently, our research aims to demonstrate the superiority of microbial fertilizers in enhancing plant growth by utilizing a comprehensive approach that integrates microbiomics and metabolomics techniques.

Response of bacterial community structure in saline soils to the application of kitchen waste-derived fermented organic fertilizer

Saline soils, which inhibit plant growth and diminish soil functions such as carbon storage, present a significant challenge to agricultural productivity. Consequently, soil improvement is crucial for achieving sustainable agricultural development. Organic fertilizers, particularly those derived from kitchen waste, have shown potential in enhancing soil fertility and structure. However, the interaction between kitchen waste - derived fermented organic fertilizers and their impact on microbial diversity, community structure, and nutrient dynamics in saline soils remains an underexplored area within environmental research. In this study, microcosm experiments were conducted with saline soil samples. We examined the temporal changes in soil nutrient levels and microbial diversity after the application of inorganic and organic fertilizer for a 15-day period. The results demonstrated that short-term application of kitchen waste fermented organic fertilizer significantly increased the levels of organic matter (OM), total nitrogen (TN), hydrolyzed nitrogen (HN), total phosphorus (TP), available phosphorus (AP), and available potassium (AK); however, it also led to a reduction in microbial diversity within saline soils while simultaneously promoting the presence of beneficial microorganisms such as Photobacterium, Pseudoalteromonas, and Planococcus. The relative abundance of Bacillus increased from 0.34 to 35.22% in the COS (treatment with 30% organic fertilizer) treatment. The redundancy analysis demonstrated that, except for TK (total potassium), the physicochemical properties of the saline soils were positively correlated with the dominant bacterial community abundance under the BOS (treatment with 10% organic fertilizer) and COS treatments but negatively correlated with the salt-tolerant bacterial abundance under the CK (treatment with saline soil) and AIS (treatment with saline soil and inorganic fertilizer) treatments. In conclusion, the application of kitchen waste fermented organic fertilizer is a beneficial strategy for enhancing saline soil fertility, promoting the proliferation of beneficial microorganisms, and rehabilitating saline soils.

Optimization of exogenous CeO2 nanoparticles on Pak choi (Brassica rapa L. var. chinensis) to alleviate arsenic stress

Arsenic (As) is a regulated hazardous substance that persists in the environment, causing issues related to environmental health, agriculture, and food safety. Cerium oxide nanoparticles (CeO2 NPs) are emerging sustainable solutions for alleviating heavy metal stress. However, their effectiveness and optimization for foliar application in reducing As stress, especially in Pak choi, has not been reported yet. Hence, this study aims to examine the effects of foliar application of CeO2 NPs (75,000,000, 150,000,000, and 300,000,000 ng/L) on the growth, nutrient availability, and antioxidant enzymatic activities of Pak choi plants under As stress. The findings showed that foliar application of 75,000,000 ng/L CeO2 NPs significantly increased shoot length (77.32%), root length (80.98%), and number of leaves (80.23%) as compared to control without NPs. The lowest dose of CeO2 NPs (75,000,000 ng/L) increased antioxidant enzyme activities such as peroxidase (86.10%), superoxide dismutase (81.48%), and catalase (52.07%), while significantly reducing malondialdehyde (44.02%), hydrogen peroxide (34.20%), and electrolyte leakage (43.53%). Furthermore, foliar application of 75,000,000 ng/L CeO2 NPs significantly increased the content of zinc (81.02%), copper (56.99%), iron (88.04%), manganese (68.37%), magnesium (76.83%), calcium (61.16%), and potassium (84.91%) in leaves when compared to control without NPs. The same trend was observed for shoot and root nutrient concentrations. Most importantly, 75,000,000 ng/L CeO2 NPs foliar application significantly reduced shoot As (45.11%) and root As (20.89%) concentration compared to control, providing a reassuring indication of their potential to reduce As concentration in plants. Our study's findings are of utmost importance as they indicate that lower concentrations of foliar-applied CeO2 NPs can be more effective in enhancing crop nutrition and reducing heavy metals than higher concentrations. This article is intended to present critical issues of As contamination in agricultural soils, which imposes substantial risks to crop productivity and food security.

Microalgae and microbial inoculant as partial substitutes for chemical fertilizer enhance Polygala tenuifolia yield and quality by improving soil microorganisms

Excessive utilization of chemical fertilizers degrades the quality of medicinal plants and soil. Bio-organic fertilizers (BOFs) including microbial inoculants and microalgae have garnered considerable attention as potential substitutes for chemical fertilizer to enhance yield. In this study, a field experiment was conducted to investigate the effects of BOF partially substituting chemical fertilizer on the growth and quality of medicinal plant Polygala tenuifolia. The growth parameters, bioactive component contents, soil properties and composition of rhizosphere microorganisms were measured. The results indicated that substituting 40% of chemical fertilizer with microalgae showed the most pronounced growth-promoting effect, leading to a 29.30% increase in underground biomass and a 19.72% increase in 3,6'-disinapoylsucrose (DISS) content. Substituting 20% of chemical fertilizer with microalgae improved soil quality, significantly increasing soil organic matter content by 15.68% (p<0.05). Microalgae addition significantly affected the rhizosphere bacterial community composition of P. tenuifolia, reducing the relative abundance of Cladosporium by 33.33% and 57.93%, while increasing the relative abundance of Chloroflexi by 31.06% and 38.27%, under 20% and 40% chemical fertilizer reduction, respectively. The relative abundance of Chloroflexi positively correlated with both the underground biomass and DISS content (p<0.05), indicating that microalgae may stimulate Chloroflexi species associated with carbon cycling, thereby enhancing soil fertility, nutrient absorption, and ultimately leading to increased biomass accumulation and production of bioactive components in P. tenuifolia. In addition, there was no significant difference in underground growth and bioactive component contents between reduced chemical fertilizer dosage combined with solid microbial inoculant (SMI) and polyglutamic microbial inoculant (PMI), compared with 100% chemical fertilizer. Correlation analysis revealed that PMI could increase soil phosphorus availability through Streptomyces recruitment. In conclusion, our findings demonstrated that bio-organic fertilizers can partially substitute chemical fertilizer to improve soil properties and microorganisms, enhancing the growth and quality of P. tenuifolia. This provides a theoretical basis for increasing medicinal plant productivity under chemical fertilizer reduction.

The structure and function of rhizosphere bacterial communities: impact of chemical vs. bio-organic fertilizers on root disease, quality, and yield of Codonopsis pilosula

Introduction

Long-term use of chemical fertilizers (CFs) can cause soil compaction and acidification. In recent years, bio-organic fertilizers (BOFs) have begun to replace CFs in some vegetables and cash crops, but the application of CFs or BOFs has resulted in crop quality and disease occurrence.

Methods

This study aimed to analyze the microbial mechanism of differences between CFs and BOFs in root disease, quality, and yield of tuber Chinese herbal medicine. We studied the effects of CFs, organic fertilizers, commercial BOFs, biocontrol bacteria BOFs, and biocontrol fungi BOFs on rhizosphere microbial community structure and function, root rot, quality, and yield of Codonopsis pilosula at different periods after application and analyzed the correlation.

Results and discussion

Compared to CFs, the emergence rate and yield in BOF treatments were increased by 21.12 and 33.65%, respectively, and the ash content, water content, and disease index in the BOF treatments were decreased by 17.87, 8.19, and 76.60%, respectively. The structural equation model showed that CFs promoted the quality and yield of C. pilosula by influencing soil environmental factors, while BOFs directly drove soil bacterial community to reduce disease index and improve the quality and yield of C. pilosula. There was a stronger interaction and stability of soil microbial networks after BOF treatments. Microlunatus, Rubrobacter, Luteitalea, Nakamurella, and Pedomicrobium were identified as effector bacteria, which were related to disease prevention and yield and quality increase of C. pilosula. Microbial functional analysis indicated that the signal transduction and amino acid metabolism of soil bacteria might play a major role in improving the quality and yield of C. pilosula in the early and middle growth stages. In conclusion, compared to CFs, BOFs obtained a lower disease index of root rot and a higher quality and yield of C. pilosula by changing the structure and function of the rhizosphere bacterial community.

The Structural and Functional Responses of Rhizosphere Bacteria to Biodegradable Microplastics in the Presence of Biofertilizers

Biodegradable microplastics (Bio-MPs) are a hot topic in soil research due to their potential to replace conventional microplastics. Biofertilizers are viewed as an alternative to inorganic fertilizers in agriculture due to their potential to enhance crop yields and food safety. The use of both can have direct and indirect effects on rhizosphere microorganisms. However, the influence of the coexistence of "Bio-MPs and biofertilizers" on rhizosphere microbial characteristics remains unclear. We investigated the effects of coexisting biofertilizers and Bio-MPs on the structure, function, and especially the carbon metabolic properties of crop rhizosphere bacteria, using a pot experiment in which polyethylene microplastics (PE-MPs) were used as a reference. The results showed that the existence of both microplastics (MPs) changed the physicochemical properties of the rhizosphere soil. Exposure to MPs also remarkably changed the composition and diversity of rhizosphere bacteria. The network was more complex in the Bio-MPs group. Additionally, metagenomic analyses showed that PE-MPs mainly affected microbial vitamin metabolism. Bio-MPs primarily changed the pathways related to carbon metabolism, such as causing declined carbon fixation/degradation and inhibition of methanogenesis. After partial least squares path model (PLS-PM) analysis, we observed that both materials influenced the rhizosphere environment through the bacterial communities and functions. Despite the degradability of Bio-MPs, our findings confirmed that the coexistence of biofertilizers and Bio-MPs affected the fertility of the rhizosphere. Regardless of the type of plastic, its use in soil requires an objective and scientifically grounded approach.

Organic Materials Promote Rhododendron simsii Growth and Rhizosphere Soil Properties in a Lead-Zinc Mining Wasteland

The mining of metal minerals generates considerable mining wasteland areas, which are characterized by poor soil properties that hinder plant growth. In this study, a field plot experiment was carried out in the mining wasteland of the Lanping lead-zinc mine in Yunnan Province to study the effects of applying three organic materials-biochar (B), organic fertilizer (OF), and sludge (S)-at concentrations of 1% (mass fraction), on promoting the soil of mining wasteland and the growth of two plant varieties (Huolieniao and Yingshanhong). The results showed that the amount of available nutrients in the surface soil of a mining wasteland could be considerably increased by S and OF compared to the control check (CK). In the rhizosphere soils of two Rhododendron simsii varieties, the application of S increased the available phosphorus (P) content by 66.4% to 108.8% and the alkali-hydrolyzed nitrogen (N) content by 61.7% to 295.5%. However, the contents of available cadmium (Cd) and available lead (Pb) were reduced by 17.1% to 32.0% and 14.8% to 19.0%, respectively. Moreover, three organic materials increased the photosynthetic rate and biomass of two R. simsii varieties. Specifically, OF and S were found to significantly increase the biomass of R. simsii. Organic materials have direct impacts on the increased plant height and biomass of R. simsii. Additionally, organic materials indirectly contribute to the growth of R. simsii by reducing the content of available Cd and available Pb in rhizosphere soil while increasing the content of available nutrients according to the structural equation model (SEM). Overall, S can stabilize Cd and Pb, increase soil nutrient contents, and promote the growth of R. simsii effectively, and has great potential in the vegetation reconstruction of mining wasteland.

Effects of organic fertilizers on plant growth and the rhizosphere microbiome

Application of organic fertilizers is an important strategy for sustainable agriculture. The biological source of organic fertilizers determines their specific functional characteristics, but few studies have systematically examined these functions or assessed their health risk to soil ecology. To fill this gap, we analyzed 16S rRNA gene amplicon sequencing data from 637 soil samples amended with plant- and animal-derived organic fertilizers (hereafter plant fertilizers and animal fertilizers). Results showed that animal fertilizers increased the diversity of soil microbiome, while plant fertilizers maintained the stability of soil microbial community. Microcosm experiments verified that plant fertilizers were beneficial to plant root development and increased carbon cycle pathways, while animal fertilizers enriched nitrogen cycle pathways. Compared with animal fertilizers, plant fertilizers harbored a lower abundance of risk factors such as antibiotic resistance genes and viruses. Consequently, plant fertilizers might be more suitable for long-term application in agriculture. This work provides a guide for organic fertilizer selection from the perspective of soil microecology and promotes sustainable development of organic agriculture.IMPORTANCEThis study provides valuable guidance for use of organic fertilizers in agricultural production from the perspective of the microbiome and ecological risk.

Effects of peach branch organic fertilizer on the soil microbial community in peach orachards

Peach branches is a by-product of peach industry. Making peach branch waste into peach branch organic fertilizer (PBOF) is a promising strategy of ecological utilization. In this study, the effects of PBOF on the yield and quality of peach fruit, chemical properties of bulk soil, and soil bacterial communities were investigated in a peach orchard. The results showed that the yield and sugar/acid ratio of two high-level PBOF treatments (SDH.4 and SKR.4) was higher than no fertilization treatment (CK), but there was no significant difference compared to the commercial organic fertilizer treatment (SYT.4). Moreover, the three fertilizer treatments increased soil nutrients such as soil organic matter (SOM) and available potassium (AK), compared to CK. Furthermore, PBOF increased the relative abundance of beneficial bacteria, and enhanced the soil bacterial co-occurrence pattern and the potential function of bacterial communities to degrade exogenous compounds. In addition, thanks to the local policy of encouraging the use of PBOF, the use cost of PBOF is lower than commercial organic fertilizer, which is conducive to the development of ecological agriculture.

Biodiversity of the beneficial soil-borne fungi steered by Trichoderma-amended biofertilizers stimulates plant production

The soil microbiota is critical to plant performance. Improving the ability of plant-associated soil probiotics is thus essential for establishing dependable and sustainable crop yields. Although fertilizer applications may provide an effective way of steering soil microbes, it is still unknown how the positive effects of soil-borne probiotics can be maximized and how their effects are mediated. This work aims to seek the ecological mechanisms involved in cabbage growth using bio-organic fertilizers. We conducted a long-term field experiment in which we amended soil with non-sterilized organic or sterilized organic fertilizer either containing Trichoderma guizhouense NJAU4742 or lacking this inoculum and tracked cabbage plant growth and the soil fungal community. Trichoderma-amended bio-organic fertilizers significantly increased cabbage plant biomass and this effect was attributed to changes in the resident fungal community composition, including an increase in the relative abundance and number of indigenous soil growth-promoting fungal taxa. We specifically highlight the fundamental role of the biodiversity and population density of these plant-beneficial fungal taxa in improving plant growth. Together, our results suggest that the beneficial effects of bio-organic fertilizer seem to be a combination of the biological inoculum within the organic amendment as well as the indirect promotion through effects on the diversity and composition of the soil resident plant-beneficial fungal microbiome.

Two Bacillus spp. Strains Improve the Structure and Diversity of the Rhizosphere Soil Microbial Community of Lilium brownii var. viridulum

Lily Fusarium wilt disease caused by Fusarium spp. spreads rapidly and is highly destructive, leading to a severe reduction in yield. In this study, lily (Lilium brownii var. viridulum) bulbs were irrigated after planting with suspensions of two Bacillus strains that effectively control lily Fusarium wilt disease to assess their effects on the rhizosphere soil properties and microbial community. A high-throughput sequencing of microorganisms in the rhizosphere soil was performed and the soil physicochemical properties were measured. The FunGuild and Tax4Fun tools were used for a functional profile prediction. The results showed that Bacillus amyloliquefaciens BF1 and B. subtilis Y37 controlled lily Fusarium wilt disease with control efficacies of 58.74% and 68.93%, respectively, and effectively colonized the rhizosphere soil. BF1 and Y37 increased the bacterial diversity and richness of the rhizosphere soil and improved the physicochemical properties of the soil, thereby favoring the proliferation of beneficial microbes. The relative abundance of beneficial bacteria was increased and that of pathogenic bacteria was decreased. Bacillus abundance in the rhizosphere was positively correlated with most soil physicochemical properties, whereas Fusarium abundance was negatively correlated with most physicochemical properties. Functional prediction revealed that irrigation with BF1 and Y37 significantly upregulated glycolysis/gluconeogenesis among metabolism and absorption pathways. This study provides insights into the mechanism by which two Bacillus strains with antifungal activity, BF1 and Y37, antagonize plant pathogenic fungi and lays the foundation for their effective application as biocontrol agents.