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For: Lai C, Wang J, Kan S, Zhang S, Li P, Reeve WG, Wu Z, Zhang Y. Comparative analysis of mitochondrial genomes of Broussonetia spp. (Moraceae) reveals heterogeneity in structure, synteny, intercellular gene transfer, and RNA editing. Front Plant Sci 2022;13:1052151. [PMID: 36531410 PMCID: PMC9751378 DOI: 10.3389/fpls.2022.1052151] [Citation(s) in RCA: 24] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Accepted: 11/15/2022] [Indexed: 06/17/2023]
Number Cited by Other Article(s)
1
Xiao Z, Gu Y, Zhou J, Lu M, Wang J, Lu K, Zeng Y, Tan X. De novo assembly of the complete mitochondrial genomes of two Camellia-oil tree species reveals their multibranch conformation and evolutionary relationships. Sci Rep 2025;15:2899. [PMID: 39843537 PMCID: PMC11754599 DOI: 10.1038/s41598-025-86411-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Accepted: 01/10/2025] [Indexed: 01/24/2025]  Open
2
Xie S, Chen Y, Zheng D, Luo S, Meng S, Zhong Y. Assembly and characterization of the complete mitogenome of Bauhinia purpurea (Leguminosae). BMC Genom Data 2025;26:6. [PMID: 39828674 PMCID: PMC11744893 DOI: 10.1186/s12863-025-01296-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2024] [Accepted: 01/10/2025] [Indexed: 01/22/2025]  Open
3
Soe T, Kong J, Nie L, Wang J, Peng D, Tembrock LR, Wu Z. Organelle genome assembly, annotation, and comparative analyses of Typha latifolia and T. domingensis: two keystone species for wetlands worldwide. FRONTIERS IN PLANT SCIENCE 2024;15:1484531. [PMID: 39703547 PMCID: PMC11655213 DOI: 10.3389/fpls.2024.1484531] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/22/2024] [Accepted: 11/18/2024] [Indexed: 12/21/2024]
4
Han J, Xu W, Yu H, Han Y, Zhu M. Structural and evolutionary analyses of the mitochondrial genome of Spuriopimpinella brachycarpa. FRONTIERS IN PLANT SCIENCE 2024;15:1492723. [PMID: 39659412 PMCID: PMC11628310 DOI: 10.3389/fpls.2024.1492723] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/07/2024] [Accepted: 11/06/2024] [Indexed: 12/12/2024]
5
Lian Q, Zhang S, Wu Z, Zhang C, Negrão S. Assembly and comparative analysis of the mitochondrial genome in diploid potatoes. PLANT CELL REPORTS 2024;43:249. [PMID: 39358565 DOI: 10.1007/s00299-024-03326-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/02/2024] [Accepted: 09/10/2024] [Indexed: 10/04/2024]
6
Ou T, Wu Z, Tian C, Yang Y, Li Z. Complete mitochondrial genome of Agropyron cristatum reveals gene transfer and RNA editing events. BMC PLANT BIOLOGY 2024;24:830. [PMID: 39232676 PMCID: PMC11373303 DOI: 10.1186/s12870-024-05558-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2024] [Accepted: 08/30/2024] [Indexed: 09/06/2024]
7
He X, Chen J, Li Z. Complete organelle genomes of the threatened aquatic species Scheuchzeria palustris (Scheuchzeriaceae): Insights into adaptation and phylogenomic placement. Ecol Evol 2024;14:e70248. [PMID: 39219575 PMCID: PMC11364858 DOI: 10.1002/ece3.70248] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2024] [Revised: 08/13/2024] [Accepted: 08/16/2024] [Indexed: 09/04/2024]  Open
8
Li L, Li X, Liu Y, Li J, Zhen X, Huang Y, Ye J, Fan L. Comparative analysis of the complete mitogenomes of Camellia sinensis var. sinensis and C. sinensis var. assamica provide insights into evolution and phylogeny relationship. FRONTIERS IN PLANT SCIENCE 2024;15:1396389. [PMID: 39239196 PMCID: PMC11374768 DOI: 10.3389/fpls.2024.1396389] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/05/2024] [Accepted: 07/29/2024] [Indexed: 09/07/2024]
9
Xie P, Wu J, Lu M, Tian T, Wang D, Luo Z, Yang D, Li L, Yang X, Liu D, Cheng H, Tan J, Yang H, Zhu D. Assembly and comparative analysis of the complete mitochondrial genome of Fritillaria ussuriensis Maxim. (Liliales: Liliaceae), an endangered medicinal plant. BMC Genomics 2024;25:773. [PMID: 39118028 PMCID: PMC11312713 DOI: 10.1186/s12864-024-10680-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2024] [Accepted: 08/01/2024] [Indexed: 08/10/2024]  Open
10
Wang J, Kan S, Kong J, Nie L, Fan W, Ren Y, Reeve W, Mower JP, Wu Z. Accumulation of Large Lineage-Specific Repeats Coincides with Sequence Acceleration and Structural Rearrangement in Plantago Plastomes. Genome Biol Evol 2024;16:evae177. [PMID: 39190481 PMCID: PMC11354287 DOI: 10.1093/gbe/evae177] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 08/07/2024] [Indexed: 08/29/2024]  Open
11
Zhang X, Ding Z, Lou H, Han R, Ma C, Yang S. A Systematic Review and Developmental Perspective on Origin of CMS Genes in Crops. Int J Mol Sci 2024;25:8372. [PMID: 39125940 PMCID: PMC11312923 DOI: 10.3390/ijms25158372] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2024] [Revised: 07/22/2024] [Accepted: 07/26/2024] [Indexed: 08/12/2024]  Open
12
Wang L, Liu X, Wang Y, Ming X, Qi J, Zhou Y. Comparative analysis of the mitochondrial genomes of four Dendrobium species (Orchidaceae) reveals heterogeneity in structure, synteny, intercellular gene transfer, and RNA editing. FRONTIERS IN PLANT SCIENCE 2024;15:1429545. [PMID: 39139720 PMCID: PMC11319272 DOI: 10.3389/fpls.2024.1429545] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Accepted: 07/16/2024] [Indexed: 08/15/2024]
13
Wang X, Wang D, Zhang R, Qin X, Shen X, You C. Morphological Structure Identification, Comparative Mitochondrial Genomics and Population Genetic Analysis toward Exploring Interspecific Variations and Phylogenetic Implications of Malus baccata 'ZA' and Other Species. Biomolecules 2024;14:912. [PMID: 39199300 PMCID: PMC11352593 DOI: 10.3390/biom14080912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2024] [Revised: 07/19/2024] [Accepted: 07/24/2024] [Indexed: 09/01/2024]  Open
14
Jiang Z, Chen Y, Zhang X, Meng F, Chen J, Cheng X. Assembly and evolutionary analysis of the complete mitochondrial genome of Trichosanthes kirilowii, a traditional Chinese medicinal plant. PeerJ 2024;12:e17747. [PMID: 39035164 PMCID: PMC11260417 DOI: 10.7717/peerj.17747] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Accepted: 06/24/2024] [Indexed: 07/23/2024]  Open
15
Wang J, Kan S, Liao X, Zhou J, Tembrock LR, Daniell H, Jin S, Wu Z. Plant organellar genomes: much done, much more to do. TRENDS IN PLANT SCIENCE 2024;29:754-769. [PMID: 38220520 DOI: 10.1016/j.tplants.2023.12.014] [Citation(s) in RCA: 94] [Impact Index Per Article: 94.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/12/2023] [Revised: 12/15/2023] [Accepted: 12/15/2023] [Indexed: 01/16/2024]
16
He X, Qian Z, Gichira AW, Chen J, Li Z. Assembly and comparative analysis of the first complete mitochondrial genome of the invasive water hyacinth, Eichhornia crassipes. Gene 2024;914:148416. [PMID: 38548188 DOI: 10.1016/j.gene.2024.148416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Revised: 03/12/2024] [Accepted: 03/25/2024] [Indexed: 04/28/2024]
17
Niu Y, Gao C, Liu J. Mitochondrial genome variation and intergenomic sequence transfers in Hevea species. FRONTIERS IN PLANT SCIENCE 2024;15:1234643. [PMID: 38660449 PMCID: PMC11039855 DOI: 10.3389/fpls.2024.1234643] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 03/25/2024] [Indexed: 04/26/2024]
18
Han Y, Feng YL, Wang J, Zhu SS, Jin XJ, Wu ZQ, Zhang YH. Comprehensive Analysis of the Complete Mitochondrial Genome of Rehmannia chingii: An Autotrophic Species in the Orobanchaceae Family. Genes (Basel) 2024;15:98. [PMID: 38254987 PMCID: PMC10815111 DOI: 10.3390/genes15010098] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2023] [Revised: 01/10/2024] [Accepted: 01/12/2024] [Indexed: 01/24/2024]  Open
19
Liu J, Hu JY, Li DZ. Remarkable mitochondrial genome heterogeneity in Meniocus linifolius (Brassicaceae). PLANT CELL REPORTS 2024;43:36. [PMID: 38200362 DOI: 10.1007/s00299-023-03102-w] [Citation(s) in RCA: 5] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 11/06/2023] [Indexed: 01/12/2024]
20
Bi C, Sun N, Han F, Xu K, Yang Y, Ferguson DK. The first mitogenome of Lauraceae (Cinnamomum chekiangense). PLANT DIVERSITY 2024;46:144-148. [PMID: 38343589 PMCID: PMC10851304 DOI: 10.1016/j.pld.2023.11.001] [Citation(s) in RCA: 11] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 11/13/2023] [Accepted: 11/14/2023] [Indexed: 01/23/2025]
21
Liu Q, Wu Z, Tian C, Yang Y, Liu L, Feng Y, Li Z. Complete mitochondrial genome of the endangered Prunus pedunculata (Prunoideae, Rosaceae) in China: characterization and phylogenetic analysis. FRONTIERS IN PLANT SCIENCE 2023;14:1266797. [PMID: 38155854 PMCID: PMC10753190 DOI: 10.3389/fpls.2023.1266797] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Accepted: 11/20/2023] [Indexed: 12/30/2023]
22
Ni Y, Zhang X, Li J, Lu Q, Chen H, Ma B, Liu C. Genetic diversity of Coffea arabica L. mitochondrial genomes caused by repeat- mediated recombination and RNA editing. FRONTIERS IN PLANT SCIENCE 2023;14:1261012. [PMID: 37885664 PMCID: PMC10598636 DOI: 10.3389/fpls.2023.1261012] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/18/2023] [Accepted: 09/25/2023] [Indexed: 10/28/2023]
23
Zhou P, Zhang Q, Li F, Huang J, Zhang M. Assembly and comparative analysis of the complete mitochondrial genome of Ilex metabaptista (Aquifoliaceae), a Chinese endemic species with a narrow distribution. BMC PLANT BIOLOGY 2023;23:393. [PMID: 37580695 PMCID: PMC10424370 DOI: 10.1186/s12870-023-04377-7] [Citation(s) in RCA: 24] [Impact Index Per Article: 12.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/07/2023] [Accepted: 07/12/2023] [Indexed: 08/16/2023]
24
Ala KG, Zhao Z, Ni L, Wang Z. Comparative analysis of mitochondrial genomes of two alpine medicinal plants of Gentiana (Gentianaceae). PLoS One 2023;18:e0281134. [PMID: 36701356 PMCID: PMC9879513 DOI: 10.1371/journal.pone.0281134] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/05/2022] [Accepted: 01/13/2023] [Indexed: 01/27/2023]  Open
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