Applications of a Hyperspectral Imaging System Used to Estimate Wheat Grain Protein: A Review

Micronutrient Biofortification in Wheat: QTLs, Candidate Genes and Molecular Mechanism

Micronutrient deficiency (hidden hunger) is one of the serious health problems globally, often due to diets dominated by staple foods. Genetic biofortification of a staple like wheat has surfaced as a promising, cost-efficient, and sustainable strategy. Significant genetic diversity exists in wheat and its wild relatives, but the nutritional profile in commercial wheat varieties has inadvertently declined over time, striving for better yield and disease resistance. Substantial efforts have been made to biofortify wheat using conventional and molecular breeding. QTL and genome-wide association studies were conducted, and some of the identified QTLs/marker-trait association (MTAs) for grain micronutrients like Fe have been exploited by MAS. The genetic mechanisms of micronutrient uptake, transport, and storage have also been investigated. Although wheat biofortified varieties are now commercially cultivated in selected regions worldwide, further improvements are needed. This review provides an overview of wheat biofortification, covering breeding efforts, nutritional evaluation methods, nutrient assimilation and bioavailability, and microbial involvement in wheat grain enrichment. Emerging technologies such as non-destructive hyperspectral imaging (HSI)/red, green, and blue (RGB) phenotyping; multi-omics integration; CRISPR-Cas9 alongside genomic selection; and microbial genetics hold promise for advancing biofortification.

Nitrogen monitoring and inversion algorithms of fruit trees based on spectral remote sensing: a deep review

Nitrogen, as one of the important elements affecting the growth and development of fruit trees, leads to slowed protein synthesis and reduced photosynthesis, resulting in yellowing of the leaves, poor tree growth, and decreased yield under nitrogen-deficient conditions. In order to minimize losses and maximize fruit yield, there is often an occurrence of excessive fertilization, soil structure degradation, and water pollution. Therefore, accurate and real-time monitoring of nitrogen content in fruit trees has become the fundamental prerequisite for precision management of orchards. Furthermore, precision orchard management is crucial for enhancing fruit quality by maintaining the optimal growth conditions necessary for trees. Moreover, it plays a vital role in safeguarding the ecological environment by mitigating the overuse of fertilizers and pesticides. With the continuous development and application of spectral remote sensing technology in agricultural monitoring and land management, this technology can provide an effective method for monitoring nitrogen content. Based on a review of relevant literature, this paper summarizes a research framework for monitoring and inversion of nitrogen content in fruit trees, which provides help for further research. Firstly, based on different remote sensing platforms, the application was discussed, on spectral remote sensing technology in the acquisition of nitrogen content in fruit trees. Secondly, the index parameters that can reflect the nitrogen content of fruit trees are summarized, which provides practical guidance for remote sensing monitoring. Additionally, the regression algorithms and application situations based on spectral data for nitrogen content were introduced. In conclusion, in response to the current issues and technological limitations, future research should focus on studying the nitrogen content characteristics of fruit trees during different phenological periods, integrating multi-type data information, and thereby improving the universality of the nitrogen content inversion model for fruit trees.

The 500-meter long-term winter wheat grain protein content dataset for China from multi-source data

In China, the exigency for precise wheat grain protein content (GPC) data rises with growing food consumption demands and global market competition. However, due to the lack of extensive, prolonged high-resolution benchmark data, previous GPC studies have primarily focused on experimental fields, small geographic units, and limited temporal scopes. Additionally, the diverse geographical terrain in China exacerbates the challenges of large-scale GPC estimation. To address this challenge and the data gap, the first 500-meter spatial resolution, long-term winter wheat dataset covering major planting regions in China (CNWheatGPC-500) was created by integrating multi-source data from ERA5 and MODIS. The results demonstrate that the GPC estimation model based on hierarchical linear model significantly outperformed other conventional models. The validation dataset exhibited an R2 of 0.45 and an RMSE of 0.96%. In cross-validation, the RMSE values ranged from 0.90% in Gansu to 1.32% in Anhui. For leave-one-year-out cross-validation, the RMSE values ranged from 0.77% to 1.11%. CNWheatGPC-500 offers valuable insights for enhancing wheat production, quality control, and agricultural decision-making.

A model for inversion of hyperspectral characteristics of phosphate content in mural plaster based on fractional-order differential algorithm

The Dunhuang murals, a significant part of Chinese heritage, have suffered deterioration primarily due to environmental and chemical factors, notably salt damage. This study proposes a sophisticated method that synergizes Fractional Order Differentiation (FOD) and Partial Least Squares Regression (PLSR) to accurately invert the phosphate content in the mural plaster of the Dunhuang paintings. The focal points of the research include: (1) To address the issue of information loss and reduced modeling precision caused by integer-order differentiation algorithms, the FOD method is employed for preprocessing spectral data. This approach ensures the fine spectral differences in the phosphate content of the mural plaster are precisely captured, (2) Utilizing PLSR, the study models the spectral bands identified at a significance level of 0.01 with measured conductivity values, thereby enabling the precise prediction of the phosphate content in the murals. The research outcomes reveal: (1) The FOD method can elucidate the nonlinear characteristics and variation patterns of the mural samples in the spectral data. As the order increases from zero to two, the number of spectral bands meeting the 0.01 significance test initially decreases and then increases. The highest absolute value of the positive correlation coefficient is observed at the 1.9 order, corresponding to the 2077 nm band, (2) For predicting the phosphate content in the murals, the model at the 1.9 order is most suitable for inversion. This model, after cross-validation, achieves a maximum R2 value of 0.861. This study created an efficient FOD-based model for estimating phosphate in mural plaster.

Reviving grain quality in wheat through non-destructive phenotyping techniques like hyperspectral imaging

A long-term goal of breeders and researchers is to develop crop varieties that can resist environmental stressors and produce high yields. However, prioritising yield often compromises improvement of other key traits, including grain quality, which is tedious and time-consuming to measure because of the frequent involvement of destructive phenotyping methods. Recently, non-destructive methods such as hyperspectral imaging (HSI) have gained attention in the food industry for studying wheat grain quality. HSI can quantify variations in individual grains, helping to differentiate high-quality grains from those of low quality. In this review, we discuss the reduction of wheat genetic diversity underlying grain quality traits due to modern breeding, key traits for grain quality, traditional methods for studying grain quality and the application of HSI to study grain quality traits in wheat and its scope in breeding. Our critical review of literature on wheat domestication, grain quality traits and innovative technology introduces approaches that could help improve grain quality in wheat.

Dynamic monitoring of maize grain quality based on remote sensing data

Remote sensing data have been widely used to monitor crop development, grain yield, and quality, while precise monitoring of quality traits, especially grain starch and oil contents considering meteorological elements, still needs to be improved. In this study, the field experiment with different sowing time, i.e., 8 June, 18 June, 28 June, and 8 July, was conducted in 2018-2020. The scalable annual and inter-annual quality prediction model for summer maize in different growth periods was established using hierarchical linear modeling (HLM), which combined hyperspectral and meteorological data. Compared with the multiple linear regression (MLR) using vegetation indices (VIs), the prediction accuracy of HLM was obviously improved with the highest R ², root mean square error (RMSE), and mean absolute error (MAE) values of 0.90, 0.10, and 0.08, respectively (grain starch content (GSC)); 0.87, 0.10, and 0.08, respectively (grain protein content (GPC)); and 0.74, 0.13, and 0.10, respectively (grain oil content (GOC)). In addition, the combination of the tasseling, grain-filling, and maturity stages further improved the predictive power for GSC (R ² = 0.96). The combination of the grain-filling and maturity stages further improved the predictive power for GPC (R ² = 0.90). The prediction accuracy developed in the combination of the jointing and tasseling stages for GOC (R ² = 0.85). The results also showed that meteorological factors, especially precipitation, had a great influence on grain quality monitoring. Our study provided a new idea for crop quality monitoring by remote sensing.

Ensuring Explainability and Dimensionality Reduction in a Multidimensional HSI World for Early XAI-Diagnostics of Plant Stress

This work is mostly devoted to the search for effective solutions to the problem of early diagnosis of plant stress (given an example of wheat and its drought stress), which would be based on explainable artificial intelligence (XAI). The main idea is to combine the benefits of two of the most popular agricultural data sources, hyperspectral images (HSI) and thermal infrared images (TIR), in a single XAI model. Our own dataset of a 25-day experiment was used, which was created via both (1) an HSI camera Specim IQ (400-1000 nm, 204, 512 × 512) and (2) a TIR camera Testo 885-2 (320 × 240, res. 0.1 °C). The HSI were a source of the k-dimensional high-level features of plants (k ≤ K, where K is the number of HSI channels) for the learning process. Such combination was implemented as a single-layer perceptron (SLP) regressor, which is the main feature of the XAI model and receives as input an HSI pixel-signature belonging to the plant mask, which then automatically through the mask receives a mark from the TIR. The correlation of HSI channels with the TIR image on the plant's mask on the days of the experiment was studied. It was established that HSI channel 143 (820 nm) was the most correlated with TIR. The problem of training the HSI signatures of plants with their corresponding temperature value via the XAI model was solved. The RMSE of plant temperature prediction is 0.2-0.3 °C, which is acceptable for early diagnostics. Each HSI pixel was represented in training by a number (k) of channels (k ≤ K = 204 in our case). The number of channels used for training was minimized by a factor of 25-30, from 204 to eight or seven, while maintaining the RMSE value. The model is computationally efficient in training; the average training time was much less than one minute (Intel Core i3-8130U, 2.2 GHz, 4 cores, 4 GB). This XAI model can be considered a research-aimed model (R-XAI), which allows the transfer of knowledge about plants from the TIR domain to the HSI domain, with their contrasting onto only a few from hundreds of HSI channels.

Hyperspectral remote sensing for tobacco quality estimation, yield prediction, and stress detection: A review of applications and methods

Tobacco is an important economic crop and the main raw material of cigarette products. Nowadays, with the increasing consumer demand for high-quality cigarettes, the requirements for their main raw materials are also varying. In general, tobacco quality is primarily determined by the exterior quality, inherent quality, chemical compositions, and physical properties. All these aspects are formed during the growing season and are vulnerable to many environmental factors, such as climate, geography, irrigation, fertilization, diseases and pests, etc. Therefore, there is a great demand for tobacco growth monitoring and near real-time quality evaluation. Herein, hyperspectral remote sensing (HRS) is increasingly being considered as a cost-effective alternative to traditional destructive field sampling methods and laboratory trials to determine various agronomic parameters of tobacco with the assistance of diverse hyperspectral vegetation indices and machine learning algorithms. In light of this, we conduct a comprehensive review of the HRS applications in tobacco production management. In this review, we briefly sketch the principles of HRS and commonly used data acquisition system platforms. We detail the specific applications and methodologies for tobacco quality estimation, yield prediction, and stress detection. Finally, we discuss the major challenges and future opportunities for potential application prospects. We hope that this review could provide interested researchers, practitioners, or readers with a basic understanding of current HRS applications in tobacco production management, and give some guidelines for practical works.