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Driouich A, Gueye MLF, Vicré M, Moore JP. The root extracellular trap; a complex and dynamic biomatrix network essential for plant protection. CURRENT OPINION IN PLANT BIOLOGY 2024; 82:102656. [PMID: 39536647 DOI: 10.1016/j.pbi.2024.102656] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/18/2024] [Revised: 10/09/2024] [Accepted: 10/14/2024] [Indexed: 11/16/2024]
Abstract
Plants have evolved a number of defense mechanisms to protect themselves against biotic stresses. Each cell, tissue, and organ is able to perceive and fight off attackers using a combination of chemical and physical defense mechanisms. Root cells employ similar defense response patterning. They develop immune responses upon pathogen attack and release a variety of compounds able to defend the root proper as well as the entire plant body. Currently, one of the most effective mechanisms of root defense involves the root extracellular trap (RET) that is produced at the tip of the root. The RET consists of root cap-derived cells embedded in mucilaginous secretions containing cell wall-derived polysaccharides, defense-related (glyco)proteins, phytoalexins, histones, and extracellular DNA (eDNA). The RET network plays a central role in root immunity and fulfills biological functions similar to those performed by neutrophil extracellular traps in mammals.
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Affiliation(s)
- Azeddine Driouich
- Normandie Université, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale EA 4358, Fédération de Recherche -Normandie Végétal- FED 4277, Université de Rouen Normandie, 76000, Rouen, France.
| | - Marie-Laure Follet Gueye
- Normandie Université, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale EA 4358, Fédération de Recherche -Normandie Végétal- FED 4277, Université de Rouen Normandie, 76000, Rouen, France
| | - Maïté Vicré
- Normandie Université, Laboratoire Glycobiologie et Matrice Extracellulaire Végétale EA 4358, Fédération de Recherche -Normandie Végétal- FED 4277, Université de Rouen Normandie, 76000, Rouen, France
| | - John P Moore
- South African Grape and Wine Research Institute, Department of Viticulture and Oenology, Faculty of AgriSciences, Stellenbosch University, Matieland, 7602, South Africa
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Boulogne I, Mirande‐Ney C, Bernard S, Bardor M, Mollet J, Lerouge P, Driouich A. Glycomolecules: from "sweet immunity" to "sweet biostimulation"? PHYSIOLOGIA PLANTARUM 2024; 176:e14640. [PMID: 39618250 PMCID: PMC11609761 DOI: 10.1111/ppl.14640] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 10/06/2024] [Accepted: 11/11/2024] [Indexed: 12/13/2024]
Abstract
Climate changes and environmental contaminants are daunting challenges that require an urgent change from current agricultural practices to sustainable agriculture. Biostimulants are natural solutions that adhere to the principles of organic farming and are believed to have low impacts on the environment and human health. Further, they may contribute to reducing the use of chemical inputs while maintaining productivity in adverse environments. Biostimulants are generally defined as formulated substances and microorganisms showing benefits for plant growth, yield, rhizosphere function, nutrient-use efficiency, quality of harvested products, or abiotic stress tolerance. These biosolutions are categorized in different subclasses. Several of them are enriched in glycomolecules and their oligomers. However, very few studies have considered them as active molecules in biostimulation and as a subclass on their own. Herein, we describe the structure and the functions of complex polysaccharides, glycoproteins, and glycolipids in relation to plant defense or biostimulation. We also discuss the parallels between sugar-enhanced plant defense and biostimulation with glycomolecules and introduce the concept of sweet biostimulation or glycostimulation.
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Affiliation(s)
- I. Boulogne
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
- ECOTERCA ‐ ÉCOlogie TERrestre CAribéenneUniversité des Antilles, Faculté des Sciences Exactes et NaturellesPointe‐à‐Pitre CedexFrance
| | - C. Mirande‐Ney
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
| | - S. Bernard
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
| | - M. Bardor
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
| | - J.‐C. Mollet
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
| | - P. Lerouge
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
| | - A. Driouich
- Université de Rouen Normandie, Normandie Univ, GlycoMEV UR 4358SFR Normandie Végétal FED 4277, Fédération NORSEVE (Normandie‐Québec), Innovation Chimie Carnot, IRIB, GDR CNRS Chemobiologie, RMT BESTIMRouenFrance
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Riseh RS, Fathi F, Vatankhah M, Kennedy JF. Exploring the role of levan in plant immunity to pathogens: A review. Int J Biol Macromol 2024; 279:135419. [PMID: 39245096 DOI: 10.1016/j.ijbiomac.2024.135419] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2024] [Revised: 08/26/2024] [Accepted: 09/05/2024] [Indexed: 09/10/2024]
Abstract
This review article delves into the intricate relationship between levan, a versatile polysaccharide, and its role in enhancing plant resistance against pathogens. By exploring the potential applications of levan in agriculture and biotechnology, such as crop protection, stress tolerance enhancement, and biotechnological innovations, significant advancements in sustainable agriculture are uncovered. Despite challenges in optimizing application methods and addressing regulatory hurdles, understanding the mechanisms of levan-mediated plant immunity offers promising avenues for future research. This review underscores the implications of utilizing levan to develop eco-friendly solutions, reduce reliance on chemical pesticides, and promote sustainable agricultural practices. Ultimately, by unraveling the pivotal role of levan in plant-pathogen interactions, this review sets the stage for transformative innovations in agriculture and highlights the path towards a more resilient and sustainable agricultural future.
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Affiliation(s)
- Roohallah Saberi Riseh
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, 7718897111 Rafsanjan, Iran.
| | - Fariba Fathi
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, 7718897111 Rafsanjan, Iran
| | - Masoumeh Vatankhah
- Department of Plant Protection, Faculty of Agriculture, Vali-e-Asr University of Rafsanjan, 7718897111 Rafsanjan, Iran
| | - John F Kennedy
- Chembiotech Laboratories Ltd, WR15 8FF Tenbury Wells, United Kingdom.
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Leaerts L, Van den Ende W. Sweet Immunity in Action: Unlocking Stem Reserves to Improve Yield and Quality. A Potential Key Role for Jasmonic Acid. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:18347-18352. [PMID: 39120622 DOI: 10.1021/acs.jafc.4c03874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/10/2024]
Abstract
Common agronomic practices such as stem topping, side branch removal, and girdling can induce wound priming, mediated by jasmonic acid (JA). Low light conditions during greenhouse tomato production make the leaves more sensitive to the application of exogenous sugar, which is perceived as a "danger" in accordance with the concept of "Sweet Immunity". Consequently, source-sink balances are altered, leading to the remobilization of stem starch reserves and enabling the redirection of more carbon toward developing fruits, thereby increasing tomato yield and fruit quality. Similarities are drawn with the mobilization of fructans following defoliation of fodder grasses (wounding) and the remobilization of fructan and starch reserves under terminal drought and heat stress in wheat and rice (microwounding, cellular leakage). A central role for JA signaling is evident in all of these processes, closely intertwining with sugar signaling pathways. Therefore, JA signaling, associated with wounding and sugar priming events, offers numerous opportunities to alter source-sink balances across a broader spectrum of agricultural and horticultural crops, for instance, through the exogenous application of JA and fructans or a combination. This may entail reconfiguring and reversing phloem connections, potentially leading to an enhanced yield and product quality. Such processes may also disengage the growth-defense trade-off in plants.
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Affiliation(s)
- Laura Leaerts
- Lab of Molecular Plant Biology and KU Leuven Plant Institute, Kasteelpark Arenberg 31, B 3001 Leuven, Belgium
| | - Wim Van den Ende
- Lab of Molecular Plant Biology and KU Leuven Plant Institute, Kasteelpark Arenberg 31, B 3001 Leuven, Belgium
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Meresa BK, Ayimut KM, Weldemichael MY, Geberemedhin KH, Kassegn HH, Geberemikael BA, Egigu EM. Carbohydrate elicitor-induced plant immunity: Advances and prospects. Heliyon 2024; 10:e34871. [PMID: 39157329 PMCID: PMC11327524 DOI: 10.1016/j.heliyon.2024.e34871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 07/10/2024] [Accepted: 07/17/2024] [Indexed: 08/20/2024] Open
Abstract
The perceived negative impacts of synthetic agrochemicals gave way to alternative, biological plant protection strategies. The deployment of induced resistance, comprising boosting the natural defense responses of plants, is one of those. Plants developed multi-component defense mechanisms to defend themselves against biotic and abiotic stresses. These are activated upon recognition of stress signatures via membrane-localized receptors. The induced immune responses enable plants to tolerate and limit the impact of stresses. A systemic cascade of signals enables plants to prime un-damaged tissues, which is crucial during secondary encounters with stress. Comparable stress tolerance mechanisms can be induced in plants by the application of carbohydrate elicitors such as chitin/chitosan, β-1,3-glucans, oligogalacturonides, cellodextrins, xyloglucans, alginates, ulvans, and carrageenans. Treating plants with carbohydrate-derived elicitors enable the plants to develop resistance appliances against diverse stresses. Some carbohydrates are also known to have been involved in promoting symbiotic signaling. Here, we review recent progresses on plant resistance elicitation effect of various carbohydrate elicitors and the molecular mechanisms of plant cell perception, cascade signals, and responses to cascaded cues. Besides, the molecular mechanisms used by plants to distinguish carbohydrate-induced immunity signals from symbiotic signals are discussed. The structure-activity relationships of the carbohydrate elicitors are also described. Furthermore, we forwarded future research outlooks that might increase the utilization of carbohydrate elicitors in agriculture in order to improve the efficacy of plant protection strategies.
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Affiliation(s)
- Birhanu Kahsay Meresa
- Department of Biotechnology, College of Dryland Agriculture and Natural Resources, Mekelle University, Mekelle, Tigray, Ethiopia
| | - Kiros-Meles Ayimut
- Department of Crop and Horticultural Sciences, College of Dryland Agriculture and Natural Resources, Mekelle University, Mekelle, Tigray, Ethiopia
| | - Micheale Yifter Weldemichael
- Department of Biotechnology, College of Dryland Agriculture and Natural Resources, Mekelle University, Mekelle, Tigray, Ethiopia
| | - Kalayou Hiluf Geberemedhin
- Department of Chemistry, College of Natural and Computational Sciences, Mekelle University, Mekelle, Tigray, Ethiopia
| | - Hagos Hailu Kassegn
- Department of Food Science and Postharvest Technology, College of Dryland Agriculture and Natural Resources, Mekelle University, Mekelle, Tigray, Ethiopia
| | - Bruh Asmelash Geberemikael
- Department of Biotechnology, College of Dryland Agriculture and Natural Resources, Mekelle University, Mekelle, Tigray, Ethiopia
| | - Etsay Mesele Egigu
- Department of Biotechnology, College of Dryland Agriculture and Natural Resources, Mekelle University, Mekelle, Tigray, Ethiopia
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Harris FM, Mou Z. Damage-Associated Molecular Patterns and Systemic Signaling. PHYTOPATHOLOGY 2024; 114:308-327. [PMID: 37665354 DOI: 10.1094/phyto-03-23-0104-rvw] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 09/05/2023]
Abstract
Cellular damage inflicted by wounding, pathogen infection, and herbivory releases a variety of host-derived metabolites, degraded structural components, and peptides into the extracellular space that act as alarm signals when perceived by adjacent cells. These so-called damage-associated molecular patterns (DAMPs) function through plasma membrane localized pattern recognition receptors to regulate wound and immune responses. In plants, DAMPs act as elicitors themselves, often inducing immune outputs such as calcium influx, reactive oxygen species generation, defense gene expression, and phytohormone signaling. Consequently, DAMP perception results in a priming effect that enhances resistance against subsequent pathogen infections. Alongside their established function in local tissues, recent evidence supports a critical role of DAMP signaling in generation and/or amplification of mobile signals that induce systemic immune priming. Here, we summarize the identity, signaling, and synergy of proposed and established plant DAMPs, with a focus on those with published roles in systemic signaling.
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Affiliation(s)
- Fiona M Harris
- Department of Microbiology and Cell Science, University of Florida, P.O. Box 110700, Gainesville, FL 32611
| | - Zhonglin Mou
- Department of Microbiology and Cell Science, University of Florida, P.O. Box 110700, Gainesville, FL 32611
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Dobrange E, Porras-Domínguez JR, Van den Ende W. The Complex GH32 Enzyme Orchestra from Priestia megaterium Holds the Key to Better Discriminate Sucrose-6-phosphate Hydrolases from Other β-Fructofuranosidases in Bacteria. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2024; 72:1302-1320. [PMID: 38175162 DOI: 10.1021/acs.jafc.3c06874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/05/2024]
Abstract
Inulin is widely used as a prebiotic and emerging as a priming compound to counteract plant diseases. We isolated inulin-degrading strains from the lettuce phyllosphere, identified as Bacillus subtilis and Priestia megaterium, species hosting well-known biocontrol organisms. To better understand their varying inulin degradation strategies, three intracellular β-fructofuranosidases from P. megaterium NBRC15308 were characterized after expression in Escherichia coli: a predicted sucrose-6-phosphate (Suc6P) hydrolase (SacAP1, supported by molecular docking), an exofructanase (SacAP2), and an invertase (SacAP3). Based on protein multiple sequence and structure alignments of bacterial glycoside hydrolase family 32 enzymes, we identified conserved residues predicted to be involved in binding phosphorylated (Suc6P hydrolases) or nonphosphorylated substrates (invertases and fructanases). Suc6P hydrolases feature positively charged residues near the structural catalytic pocket (histidine, arginine, or lysine), whereas other β-fructofuranosidases contain tryptophans. This correlates with our phylogenetic tree, grouping all predicted Suc6P hydrolases in a clan associated with genomic regions coding for transporters involved in substrate phosphorylation. These results will help to discriminate between Suc6P hydrolases and other β-fructofuranosidases in future studies and to better understand the interaction of B. subtilis and P. megaterium endophytes with sucrose and/or fructans, sugars naturally present in plants or exogenously applied in the context of defense priming.
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Affiliation(s)
- Erin Dobrange
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, Leuven 3001, Belgium
| | | | - Wim Van den Ende
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, Leuven 3001, Belgium
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Peled E, Tornaci S, Zlotver I, Dubnika A, Toksoy Öner E, Sosnik A. First transcriptomic insight into the reprogramming of human macrophages by levan-type fructans. Carbohydr Polym 2023; 320:121203. [PMID: 37659791 DOI: 10.1016/j.carbpol.2023.121203] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2023] [Revised: 07/10/2023] [Accepted: 07/11/2023] [Indexed: 09/04/2023]
Abstract
Based on stimuli in the biological milieu, macrophages can undergo classical activation into the M1 pro-inflammatory (anti-cancer) phenotype or to the alternatively activated M2 anti-inflammatory one. Drug-free biomaterials have emerged as a new therapeutic strategy to modulate macrophage phenotype. Among them, polysaccharides polarize macrophages to M1 or M2 phenotypes based on the surface receptors they bind. Levan, a fructan, has been proposed as a novel biomaterial though its interaction with macrophages has been scarcely explored. In this study, we investigate the interaction of non-hydrolyzed and hydrolyzed Halomonas levan and its sulfated derivative with human macrophages in vitro. Viability studies show that these levans are cell compatible. In addition, RNA-sequencing analysis reveals the upregulation of pro-inflammatory pathways. These results are in good agreement with real time-quantitative polymerase chain reaction that indicates higher expression levels of C-X-C Motif Chemokine Ligand 8 and interleukin-6 genes and the M2-to-M1 reprogramming of these cells upon levan treatment. Finally, cytokine release studies confirm that hydrolyzed levans increase the secretion of pro-inflammatory cytokines and reprogram IL-4-polarized macrophages to the M1 state. Overall findings indicate that Halomonas levans trigger a classical macrophage activation and pave the way for their application in therapeutic interventions requiring a pro-inflammatory phenotype.
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Affiliation(s)
- Ella Peled
- Laboratory of Pharmaceutical Nanomaterials Science, Department of Materials Science and Engineering, Technion - Israel Institute of Technology, Haifa, Israel
| | - Selay Tornaci
- IBSB, Department of Bioengineering, Marmara University, Istanbul, Turkey
| | - Ivan Zlotver
- Laboratory of Pharmaceutical Nanomaterials Science, Department of Materials Science and Engineering, Technion - Israel Institute of Technology, Haifa, Israel
| | - Arita Dubnika
- Faculty of Materials Science and Applied Chemistry, Riga Technical University, Riga, Latvia; Baltic Biomaterials Centre of Excellence, Headquarters at Riga Technical University, Riga, Latvia
| | - Ebru Toksoy Öner
- IBSB, Department of Bioengineering, Marmara University, Istanbul, Turkey
| | - Alejandro Sosnik
- Laboratory of Pharmaceutical Nanomaterials Science, Department of Materials Science and Engineering, Technion - Israel Institute of Technology, Haifa, Israel.
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Cuéllar-Torres EA, Aguilera-Aguirre S, López-García UM, Hernández-Oñate MÁ, Montalvo-González E, Ortiz-Basurto RI, Vega-Arreguín J, Chacón-López A. Transcriptomic data exploring the effect of agave fructans on the induction of the defense system in avocado fruit. PLoS One 2023; 18:e0293396. [PMID: 37883423 PMCID: PMC10602311 DOI: 10.1371/journal.pone.0293396] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Accepted: 10/11/2023] [Indexed: 10/28/2023] Open
Abstract
The effect of 20% high degree polymerized agave fructans (HDPAF) on the induction of the defense system in avocado fruits was investigated by transcriptomic analysis at 1, 24 and 72 h after treatment, and the effect of HDPAF on respiration rate and ethylene production was also analyzed. Transcriptomic profiling revealed 5425 differentially expressed genes (DEGs), 55 of which were involved in the pathways related to plant defense response to pathogens. Key genes were associated with phenylpropanoid biosynthesis, mitogen-activated protein signaling, plant hormone signaling, calcium ion signal decoding, and pathogenesis-related proteins. Dysregulated genes involved in ethylene biosynthesis were also identified, and the reduction in ethylene production by HDPAF was corroborated by gas chromatography, where three days of delayed peak production was observed compared to that in water-treated fruits. These results help to understand the mechanism of induction of the avocado defense system by applying HDPAF and support the application of HDPAF as an efficient postharvest treatment to extend the shelf life of the fruit.
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Affiliation(s)
| | | | | | - Miguel Ángel Hernández-Oñate
- Coordinación de Tecnología de Alimentos de Origen Vegetal, Centro de Investigación en Alimentación y Desarrollo A.C., Hermosillo, Sonora, México
| | | | | | - Julio Vega-Arreguín
- Laboratorio de Ciencias Agrogenómicas and Laboratorio Nacional PlanTECC, Escuela Nacional de Estudios Superiores, Universidad Nacional Autónoma de México, León, Guanajuato, México
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Dharajiya DT, Shukla N, Pandya M, Joshi M, Patel AK, Joshi CG. Resistant cumin cultivar, GC-4 counters Fusarium oxysporum f. sp. cumini infection through up-regulation of steroid biosynthesis, limonene and pinene degradation and butanoate metabolism pathways. FRONTIERS IN PLANT SCIENCE 2023; 14:1204828. [PMID: 37915505 PMCID: PMC10616826 DOI: 10.3389/fpls.2023.1204828] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Accepted: 09/21/2023] [Indexed: 11/03/2023]
Abstract
Cumin (Cuminum cyminum L.), an important spice crop belonging to the Apiaceae family is infected by Fusarium oxysporum f. sp. cumini (Foc) to cause wilt disease, one of the most devastating diseases of cumin adversely affects its production. As immune responses of cumin plants against the infection of Foc are not well studied, this research aimed to identify the genes and pathways involved in responses of cumin (cv. GC-2, GC-3, GC-4, and GC-5) to the wilt pathogen. Differential gene expression analysis revealed a total of 2048, 1576, 1987, and 1174 differentially expressed genes (DEGs) in GC-2, GC-3, GC-4, and GC-5, respectively. In the resistant cultivar GC-4 (resistant against Foc), several important transcripts were identified. These included receptors, transcription factors, reactive oxygen species (ROS) generating and scavenging enzymes, non-enzymatic compounds, calcium ion (Ca2+) transporters and receptors, R-proteins, and PR-proteins. The expression of these genes is believed to play crucial roles in conferring resistance against Foc. Gene ontology (GO) analysis of the up-regulated DEGs showed significant enrichment of 19, 91, 227, and 55 biological processes in GC-2, GC-3, GC-4, and GC-5, respectively. Notably, the resistant cultivar GC-4 exhibited enrichment in key GO terms such as 'secondary metabolic process', 'response to reactive oxygen species', 'phenylpropanoid metabolic process', and 'hormone-mediated signaling pathway'. Furthermore, the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis revealed the enrichment of 28, 57, 65, and 30 pathways in GC-2, GC-3, GC-4, and GC-5, respectively, focusing on the up-regulated DEGs. The cultivar GC-4 showed enrichment in pathways related to steroid biosynthesis, starch and sucrose metabolism, fatty acid biosynthesis, butanoate metabolism, limonene and pinene degradation, and carotenoid biosynthesis. The activation or up-regulation of various genes and pathways associated with stress resistance demonstrated that the resistant cultivar GC-4 displayed enhanced defense mechanisms against Foc. These findings provide valuable insights into the defense responses of cumin that could contribute to the development of cumin cultivars with improved resistance against Foc.
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Affiliation(s)
| | | | | | - Madhvi Joshi
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology, Government of Gujarat, Gandhinagar, Gujarat, India
| | - Amrutlal K. Patel
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology, Government of Gujarat, Gandhinagar, Gujarat, India
| | - Chaitanya G. Joshi
- Gujarat Biotechnology Research Centre (GBRC), Department of Science and Technology, Government of Gujarat, Gandhinagar, Gujarat, India
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Nguyen TNH, Leclerc L, Manzanares-Dauleux MJ, Gravot A, Vicré M, Morvan-Bertrand A, Prud'homme MP. Fructan exohydrolases (FEHs) are upregulated by salicylic acid together with defense-related genes in non-fructan accumulating plants. PHYSIOLOGIA PLANTARUM 2023; 175:e13975. [PMID: 37616010 DOI: 10.1111/ppl.13975] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/20/2023] [Revised: 06/05/2023] [Accepted: 07/04/2023] [Indexed: 08/25/2023]
Abstract
The identification of several fructan exohydrolases (FEHs, EC 3.2.1.80) in non-fructan accumulating plants raised the question of their roles. FEHs may be defense-related proteins involved in the interactions with fructan-accumulating microorganisms. Since known defense-related proteins are upregulated by defense-related phytohormones, we tested the hypothesis that FEHs of non-fructan accumulating plants are upregulated by salicylic acid (SA), jasmonic acid (JA) and ethylene (ET) using the model plant Arabidopsis thaliana and the agronomically relevant and genetically related species Brassica napus. By sequence homologies with the two known FEH genes of A. thaliana, At6-FEH, and At6&1-FEH, the genes coding for the putative B. napus FEHs, Bn6-FEH and Bn6&1-FEH, were identified. Plants were treated at root level with SA, methyl jasmonate (MeJA) or 1-aminocyclopropane-1-carboxylic acid (ACC). The transcript levels of defense-related and FEH genes were measured after treatments. MeJA and ACC did not upregulate FEHs, while HEL (HEVEIN-LIKE PREPROTEIN) expression was enhanced by both phytohormones. In both species, the expression of AOS, encoding a JA biosynthesis enzyme, was enhanced by MeJA and that of the defensine PDF1.2 and the ET signaling transcription factor ERF1/2 by ACC. In contrast, SA not only increased the expression of genes encoding antimicrobial proteins (PR1 and HEL) and the defense-related transcription factor WRKY70 but also that of FEH genes, in particular 6&1-FEH genes. This result supports the putative role of FEHs as defense-related proteins. Genotypic variability of SA-mediated FEH regulation (transcript level and activities) was observed among five varieties of B. napus, suggesting different susceptibilities toward fructan-accumulating pathogens.
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Affiliation(s)
- Thi Ngoc Hanh Nguyen
- Normandie Université, UNICAEN, UMR 950 INRAE, EVA Ecophysiologie Végétale Agronomie et Nutritions N.C.S, SFR Normandie Végétale FED4277, Caen, France
- Normandie Université, Univ Rouen Normandie, Laboratoire Glyco-MEV EA 4358, SFR Normandie Végétale FED4277, Rouen, France
| | - Laëtitia Leclerc
- Normandie Université, UNICAEN, UMR 950 INRAE, EVA Ecophysiologie Végétale Agronomie et Nutritions N.C.S, SFR Normandie Végétale FED4277, Caen, France
| | | | - Antoine Gravot
- Institut Agro, Université Rennes, INRAE, IGEPP, Le Rheu, France
| | - Maïté Vicré
- Normandie Université, Univ Rouen Normandie, Laboratoire Glyco-MEV EA 4358, SFR Normandie Végétale FED4277, Rouen, France
| | - Annette Morvan-Bertrand
- Normandie Université, UNICAEN, UMR 950 INRAE, EVA Ecophysiologie Végétale Agronomie et Nutritions N.C.S, SFR Normandie Végétale FED4277, Caen, France
| | - Marie-Pascale Prud'homme
- Normandie Université, UNICAEN, UMR 950 INRAE, EVA Ecophysiologie Végétale Agronomie et Nutritions N.C.S, SFR Normandie Végétale FED4277, Caen, France
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12
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Hönig M, Roeber VM, Schmülling T, Cortleven A. Chemical priming of plant defense responses to pathogen attacks. FRONTIERS IN PLANT SCIENCE 2023; 14:1146577. [PMID: 37223806 PMCID: PMC10200928 DOI: 10.3389/fpls.2023.1146577] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 01/17/2023] [Accepted: 04/17/2023] [Indexed: 05/25/2023]
Abstract
Plants can acquire an improved resistance against pathogen attacks by exogenous application of natural or artificial compounds. In a process called chemical priming, application of these compounds causes earlier, faster and/or stronger responses to pathogen attacks. The primed defense may persist over a stress-free time (lag phase) and may be expressed also in plant organs that have not been directly treated with the compound. This review summarizes the current knowledge on the signaling pathways involved in chemical priming of plant defense responses to pathogen attacks. Chemical priming in induced systemic resistance (ISR) and systemic acquired resistance (SAR) is highlighted. The roles of the transcriptional coactivator NONEXPRESSOR OF PR1 (NPR1), a key regulator of plant immunity, induced resistance (IR) and salicylic acid signaling during chemical priming are underlined. Finally, we consider the potential usage of chemical priming to enhance plant resistance to pathogens in agriculture.
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Affiliation(s)
- Martin Hönig
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, Berlin, Germany
- Department of Chemical Biology, Faculty of Science, Palacký University, Olomouc, Czechia
| | - Venja M. Roeber
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, Berlin, Germany
| | - Thomas Schmülling
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, Berlin, Germany
| | - Anne Cortleven
- Institute of Biology/Applied Genetics, Dahlem Centre of Plant Sciences (DCPS), Freie Universität Berlin, Berlin, Germany
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13
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Hernández-Soberano C, López-Bucio J, Valencia-Cantero E. The Bacterial Volatile Organic Compound N,N-Dimethylhexadecylamine Induces Long-Lasting Developmental and Immune Responses throughout the Life Cycle of Arabidopsis thaliana. PLANTS (BASEL, SWITZERLAND) 2023; 12:1540. [PMID: 37050166 PMCID: PMC10096718 DOI: 10.3390/plants12071540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/08/2023] [Revised: 03/30/2023] [Accepted: 03/31/2023] [Indexed: 06/19/2023]
Abstract
N,N-dimethylhexadecylamine (DMHDA) is a bacterial volatile organic compound that affects plant growth and morphogenesis and is considered a cross-kingdom signal molecule. Its bioactivity involves crosstalk with the cytokinin and jasmonic acid (JA) pathways to control stem cell niches and induce iron deficiency adaptation and plant defense. In this study, through genetic analysis, we show that the DMHDA-JA-Ethylene (ET) relations determine the magnitude of the defensive response mounted during the infestation of Arabidopsis plants by the pathogenic fungus Botrytis cinerea. The Arabidopsis mutants defective in the JA receptor CORONATINE INSENSITIVE 1 (coi1-1) showed a more severe infestation when compared to wild-type plants (Col-0) that were partially restored by DMHDA supplements. Moreover, the oversensitivity manifested by ETHYLENE INSENSITIVE 2 (ein2) by B. cinerea infestation could not be reverted by the volatile, suggesting a role for this gene in DMHDA reinforcement of immunity. Growth of Col-0 plants was inhibited by DMHDA, but ein2 did not. Noteworthy, Arabidopsis seeds treated with DMHDA produced more vigorous plants throughout their life cycle. These data are supportive of a scenario where plant perception of a bacterial volatile influences the resistance to a fungal phytopathogen while modulating plant growth.
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Affiliation(s)
| | - José López-Bucio
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Morelia 58030, Michoacán, Mexico;
| | - Eduardo Valencia-Cantero
- Instituto de Investigaciones Químico Biológicas, Universidad Michoacana de San Nicolás de Hidalgo, Morelia 58030, Michoacán, Mexico;
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14
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Khan S, Sehar Z, Fatma M, Mir IR, Iqbal N, Tarighat MA, Abdi G, Khan NA. Involvement of ethylene in melatonin-modified photosynthetic-N use efficiency and antioxidant activity to improve photosynthesis of salt grown wheat. PHYSIOLOGIA PLANTARUM 2022; 174:e13832. [PMID: 36437590 DOI: 10.1111/ppl.13832] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Revised: 09/24/2022] [Accepted: 11/21/2022] [Indexed: 05/25/2023]
Abstract
The involvement of melatonin in the regulation of salt stress acclimation has been shown in plants in this present work. We found that the GOAL cultivar of wheat (Triticum aestivum L.) was the most salt-tolerant among the investigated cultivars, GOAL, HD-2967, PBW-17, PBW-343, PBW-550, and WH-1105 when screened for tolerance to 100 mM NaCl. The application of 100 μM melatonin maximally reduced oxidative stress and improved photosynthesis in the cv. GOAL. Melatonin supplementation reduced salt stress-induced oxidative stress by upregulating the activity of antioxidant enzymes, such as superoxide dismutase (SOD), ascorbate peroxidase (APX), and glutathione reductase (GR), and reduced the glutathione (GSH) production. This resulted in increased membrane stability, photosynthetic-N use efficiency and photosynthesis in plants. The application of 50 μM of the ethylene biosynthesis inhibitor aminoethoxyvinylglycine (AVG) in the presence of melatonin and salt stress increased H2 O2 content but reduced GR activity and GSH, photosynthesis, and plant dry mass. This signifies that melatonin-mediated salt stress tolerance was related to ethylene synthesis as it improved antioxidant activity and photosynthesis of plants under salt stress. Thus, the interaction of melatonin and ethylene bears a prominent role in salt stress tolerance in wheat and can be used to develop salt tolerance in other crops.
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Affiliation(s)
- Sheen Khan
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Zebus Sehar
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Mehar Fatma
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | - Iqbal R Mir
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
| | | | | | - Gholamareza Abdi
- Department of Biotechnology, Persian Gulf Research Institute, Persian Gulf University, Bushehr, Iran
| | - Nafees A Khan
- Plant Physiology and Biochemistry Laboratory, Department of Botany, Aligarh Muslim University, Aligarh, India
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15
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Versluys M, Toksoy Öner E, Van den Ende W. Fructan oligosaccharide priming alters apoplastic sugar dynamics and improves resistance against Botrytis cinerea in chicory. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:4214-4235. [PMID: 35383363 DOI: 10.1093/jxb/erac140] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/16/2022] [Accepted: 04/01/2022] [Indexed: 06/14/2023]
Abstract
Carbohydrates such as fructans can be involved in priming or defence stimulation, and hence potentially provide new strategies for crop protection against biotic stress. Chicory (Cichorium intybus) is a model plant for fructan research and is a crop with many known health benefits. Using the chicory-Botrytis cinerea pathosystem, we tested the effectiveness of fructan-induced immunity, focussing on different plant and microbial fructans. Sugar dynamics were followed after priming and subsequent pathogen infection. Our results indicated that many higher plants might detect extracellular levan oligosaccharides (LOS) of microbial origin, while chicory also detects extracellular small inulin-type fructooligosaccharides (FOS) of endogenous origin, thus differing from the findings of previous fructan priming studies. No clear positive effects were observed for inulin or mixed-type fructans. An elicitor-specific burst of reactive oxygen species was observed for sulfated LOS, while FOS and LOS both behaved as genuine priming agents. In addition, a direct antifungal effect was observed for sulfated LOS. Intriguingly, LOS priming led to a temporary increase in apoplastic sugar concentrations, mainly glucose, which could trigger downstream responses. Total sugar and starch contents in total extracts of LOS-primed leaves were higher after leaf detachment, indicating they could maintain their metabolic activity. Our results indicate the importance of balancing intra- and extracellular sugar levels (osmotic balance) in the context of 'sweet immunity' pathways.
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Affiliation(s)
- Maxime Versluys
- Laboratory of Molecular Plant Biology and KU Leuven Plant Institute, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium
| | - Ebru Toksoy Öner
- IBSB-Industrial Biotechnology and Systems Biology Research Group, Department of Bioengineering, Marmara University, Istanbul, Turkey
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology and KU Leuven Plant Institute, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium
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16
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Versluys M, Porras-Domínguez JR, De Coninck T, Van Damme EJM, Van den Ende W. A novel chicory fructanase can degrade common microbial fructan product profiles and displays positive cooperativity. JOURNAL OF EXPERIMENTAL BOTANY 2022; 73:1602-1622. [PMID: 34750605 DOI: 10.1093/jxb/erab488] [Citation(s) in RCA: 12] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/15/2021] [Accepted: 11/03/2021] [Indexed: 06/13/2023]
Abstract
Fructan metabolism in bacteria and plants relies on fructosyltransferases and fructanases. Plant fructanases (fructan exohydrolase, FEH) only hydrolyse terminal fructose residues. Levan (β-2,6 linkages) is the most abundant fructan type in bacteria. Dicot fructan accumulators, such as chicory (Cichorium intybus), accumulate inulin (β-2,1 linkages), harbouring several 1-FEH isoforms for their degradation. Here, a novel chicory fructanase with high affinity for levan was characterized, providing evidence that such enzymes widely occur in higher plants. It is adapted to common microbial fructan profiles, but has low affinity towards chicory inulin, in line with a function in trimming of microbial fructans in the extracellular environment. Docking experiments indicate the importance of an N-glycosylation site close to the active site for substrate specificity. Optimal pH and temperature for levan hydrolysis are 5.0 and 43.7 °C, respectively. Docking experiments suggested multiple substrate binding sites and levan-mediated enzyme dimerization, explaining the observed positive cooperativity. Alignments show a single amino acid shift in the position of a conserved DXX(R/K) couple, typical for sucrose binding in cell wall invertases. A possible involvement of plant fructanases in levan trimming is discussed, in line with the emerging 'fructan detour' concepts, suggesting that levan oligosaccharides act as signalling entities during plant-microbial interactions.
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Affiliation(s)
- Maxime Versluys
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium
| | | | - Tibo De Coninck
- Laboratory of Biochemistry and Glycobiology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Els J M Van Damme
- Laboratory of Biochemistry and Glycobiology, Ghent University, Coupure Links 653, 9000 Ghent, Belgium
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium
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17
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Versluys M, Van den Ende W. Sweet Immunity Aspects during Levan Oligosaccharide-Mediated Priming in Rocket against Botrytis cinerea. Biomolecules 2022; 12:370. [PMID: 35327562 PMCID: PMC8945012 DOI: 10.3390/biom12030370] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2021] [Revised: 02/15/2022] [Accepted: 02/21/2022] [Indexed: 02/04/2023] Open
Abstract
New strategies are required for crop protection against biotic stress. Naturally derived molecules, including carbohydrates such as fructans, can be used in priming or defense stimulation. Rocket (Eruca sativa) is an important leafy vegetable and a good source of antioxidants. Here, we tested the efficacy of fructan-induced immunity in the Botrytis cinerea pathosystem. Different fructan types of plant and microbial origin were considered and changes in sugar dynamics were analyzed. Immune resistance increased significantly after priming with natural and sulfated levan oligosaccharides (LOS). No clear positive effects were observed for fructo-oligosaccharides (FOS), inulin or branched-type fructans. Only sulfated LOS induced a direct ROS burst, typical for elicitors, while LOS behaved as a genuine priming compound. Total leaf sugar levels increased significantly both after LOS priming and subsequent infection. Intriguingly, apoplastic sugar levels temporarily increased after LOS priming but not after infection. We followed LOS and small soluble sugar dynamics in the apoplast as a function of time and found a temporal peak in small soluble sugar levels. Although similar dynamics were also found with inulin-type FOS, increased Glc and FOS levels may benefit B. cinerea. During LOS priming, LOS- and/or Glc-dependent signaling may induce downstream sweet immunity responses.
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Affiliation(s)
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology and KU Leuven Plant Institute, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium;
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18
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De Coninck T, Gistelinck K, Janse van Rensburg HC, Van den Ende W, Van Damme EJM. Sweet Modifications Modulate Plant Development. Biomolecules 2021; 11:756. [PMID: 34070047 PMCID: PMC8158104 DOI: 10.3390/biom11050756] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Revised: 04/28/2021] [Accepted: 05/12/2021] [Indexed: 02/07/2023] Open
Abstract
Plant development represents a continuous process in which the plant undergoes morphological, (epi)genetic and metabolic changes. Starting from pollination, seed maturation and germination, the plant continues to grow and develops specialized organs to survive, thrive and generate offspring. The development of plants and the interplay with its environment are highly linked to glycosylation of proteins and lipids as well as metabolism and signaling of sugars. Although the involvement of these protein modifications and sugars is well-studied, there is still a long road ahead to profoundly comprehend their nature, significance, importance for plant development and the interplay with stress responses. This review, approached from the plants' perspective, aims to focus on some key findings highlighting the importance of glycosylation and sugar signaling for plant development.
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Affiliation(s)
- Tibo De Coninck
- Laboratory of Glycobiology & Biochemistry, Department of Biotechnology, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium; (T.D.C.); (K.G.)
| | - Koen Gistelinck
- Laboratory of Glycobiology & Biochemistry, Department of Biotechnology, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium; (T.D.C.); (K.G.)
| | - Henry C. Janse van Rensburg
- Laboratory of Molecular Plant Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, B-3001 Leuven, Belgium; (H.C.J.v.R.); (W.V.d.E.)
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology, Department of Biology, KU Leuven, Kasteelpark Arenberg 31, B-3001 Leuven, Belgium; (H.C.J.v.R.); (W.V.d.E.)
| | - Els J. M. Van Damme
- Laboratory of Glycobiology & Biochemistry, Department of Biotechnology, Ghent University, Coupure Links 653, B-9000 Ghent, Belgium; (T.D.C.); (K.G.)
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19
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Abaramak G, Porras-Domínguez JR, Janse van Rensburg HC, Lescrinier E, Toksoy Öner E, Kırtel O, Van den Ende W. Functional and Molecular Characterization of the Halomicrobium sp. IBSBa Inulosucrase. Microorganisms 2021; 9:microorganisms9040749. [PMID: 33918392 PMCID: PMC8066391 DOI: 10.3390/microorganisms9040749] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2021] [Revised: 03/24/2021] [Accepted: 03/29/2021] [Indexed: 12/30/2022] Open
Abstract
Fructans are fructose-based (poly)saccharides with inulin and levan being the best-known ones. Thanks to their health-related benefits, inulin-type fructans have been under the focus of scientific and industrial communities, though mostly represented by plant-based inulins, and rarely by microbial ones. Recently, it was discovered that some extremely halophilic Archaea are also able to synthesize fructans. Here, we describe the first in-depth functional and molecular characterization of an Archaeal inulosucrase from Halomicrobium sp. IBSBa (HmcIsc). The HmcIsc enzyme was recombinantly expressed and purified in Escherichia coli and shown to synthesize inulin as proven by nuclear magnetic resonance (NMR) analysis. In accordance with the halophilic lifestyle of its native host, the enzyme showed maximum activity at very high NaCl concentrations (3.5 M), with specific adaptations for that purpose. Phylogenetic analyses suggested that Archaeal inulosucrases have been acquired from halophilic bacilli through horizontal gene transfer, with a HX(H/F)T motif evolving further into a HXHT motif, together with a unique D residue creating the onset of a specific alternative acceptor binding groove. This work uncovers a novel area in fructan research, highlighting unexplored aspects of life in hypersaline habitats, and raising questions about the general physiological relevance of inulosucrases and their products in nature.
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Affiliation(s)
- Gülbahar Abaramak
- IBSB-Industrial Biotechnology and Systems Biology Research Group, Bioengineering Department, Marmara University, Istanbul 34722, Turkey; (G.A.); (E.T.Ö.)
| | - Jaime Ricardo Porras-Domínguez
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium; (J.R.P.-D.); (H.C.J.v.R.)
| | | | - Eveline Lescrinier
- Laboratory for Medicinal Chemistry, Rega Institute for Medical Research, Herestraat 49, P.O. Box 1041, 3000 Leuven, Belgium;
| | - Ebru Toksoy Öner
- IBSB-Industrial Biotechnology and Systems Biology Research Group, Bioengineering Department, Marmara University, Istanbul 34722, Turkey; (G.A.); (E.T.Ö.)
| | - Onur Kırtel
- IBSB-Industrial Biotechnology and Systems Biology Research Group, Bioengineering Department, Marmara University, Istanbul 34722, Turkey; (G.A.); (E.T.Ö.)
- Correspondence: (O.K.); (W.V.d.E.)
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium; (J.R.P.-D.); (H.C.J.v.R.)
- Correspondence: (O.K.); (W.V.d.E.)
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20
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Kırtel O, Aydın H, Toksoy Öner E. Fructanogenic traits in halotolerant Bacillus licheniformis OK12 and their predicted functional significance. J Appl Microbiol 2021; 131:1391-1404. [PMID: 33484024 DOI: 10.1111/jam.15015] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2020] [Revised: 01/08/2021] [Accepted: 01/19/2021] [Indexed: 01/26/2023]
Abstract
AIMS Isolating a novel bacterial source of fructan from a saltern and analysis of its genome to better understand the possible roles of fructans in hypersaline environments. METHODS AND RESULTS Bacteria were isolated from crude salt samples originating from Çamaltı Saltern in Western Turkey and screened for fructanogenic traits in high-salt and sucrose-rich selective medium. Exopolysaccharide accumulated in the presence of sucrose by isolate OK12 was purified and chemically characterized via HPLC, FT-IR and NMR, which revealed that it was a levan-type fructan (β-2,6 linked homopolymer of fructose). The isolate was taxonomically classified as Bacillus licheniformis OK12 through 16S rRNA gene and whole-genome sequencing methods. Strain OK12 harbours one levansucrase and two different levanase genes, which altogether were predicted to significantly contribute to intracellular glucose and fructose pools. The isolate could withstand 15% NaCl, and thus classified as a halotolerant. CONCLUSIONS Fructanogenic traits in halotolerant B. licheniformis OK12 are significant due to predicted influx of glucose and fructose as a result of levan biosynthesis and levan hydrolysis, respectively. SIGNIFICANCE AND IMPACT OF THE STUDY Fructans from the residents of hypersaline habitats are underexplored compounds and are expected to demonstrate physicochemical properties different from their non-halophilic counterparts. Revealing fructanogenic traits in the genome of a halotolerant bacterium brings up a new perspective in physiological roles of fructans.
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Affiliation(s)
- O Kırtel
- Industrial Biotechnology and Systems Biology Research Group-IBSB, Bioengineering Department, Göztepe Campus, Marmara University, Istanbul, Turkey
| | - H Aydın
- Industrial Biotechnology and Systems Biology Research Group-IBSB, Bioengineering Department, Göztepe Campus, Marmara University, Istanbul, Turkey
| | - E Toksoy Öner
- Industrial Biotechnology and Systems Biology Research Group-IBSB, Bioengineering Department, Göztepe Campus, Marmara University, Istanbul, Turkey
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21
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Janse van Rensburg HC, Limami AM, Van den Ende W. Spermine and Spermidine Priming against Botrytis cinerea Modulates ROS Dynamics and Metabolism in Arabidopsis. Biomolecules 2021; 11:223. [PMID: 33562549 PMCID: PMC7914871 DOI: 10.3390/biom11020223] [Citation(s) in RCA: 18] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2020] [Revised: 01/27/2021] [Accepted: 02/02/2021] [Indexed: 12/31/2022] Open
Abstract
Polyamines (PAs) are ubiquitous small aliphatic polycations important for growth, development, and environmental stress responses in plants. Here, we demonstrate that exogenous application of spermine (Spm) and spermidine (Spd) induced cell death at high concentrations, but primed resistance against the necrotrophic fungus Botrytis cinerea in Arabidopsis. At low concentrations, Spm was more effective than Spd. Treatments with higher exogenous Spd and Spm concentrations resulted in a biphasic endogenous PA accumulation. Exogenous Spm induced the accumulation of H2O2 after treatment but also after infection with B. cinerea. Both Spm and Spd induced the activities of catalase, ascorbate peroxidase, and guaiacol peroxidase after treatment but also after infection with B. cinerea. The soluble sugars glucose, fructose, and sucrose accumulated after treatment with high concentrations of PAs, whereas only Spm induced sugar accumulation after infection. Total and active nitrate reductase (NR) activities were inhibited by Spm treatment, whereas Spd inhibited active NR at low concentrations but promoted active NR at high concentrations. Finally, γaminobutyric acid accumulated after treatment and infection in plants treated with high concentrations of Spm. Phenylalanine and asparagine also accumulated after infection in plants treated with a high concentration of Spm. Our data illustrate that Spm and Spd are effective in priming resistance against B. cinerea, opening the door for the development of sustainable alternatives for chemical pesticides.
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Affiliation(s)
| | - Anis M. Limami
- Univ Angers, Institut Agro, INRAE, IRHS, SFR QUASAV, F-49000 Angers, France;
| | - Wim Van den Ende
- Laboratory of Molecular Plant Biology, KU Leuven, Kasteelpark Arenberg 31, 3001 Leuven, Belgium;
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Priming with γ-Aminobutyric Acid against Botrytis cinerea Reshuffles Metabolism and Reactive Oxygen Species: Dissecting Signalling and Metabolism. Antioxidants (Basel) 2020; 9:antiox9121174. [PMID: 33255543 PMCID: PMC7759855 DOI: 10.3390/antiox9121174] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 11/21/2020] [Accepted: 11/23/2020] [Indexed: 12/12/2022] Open
Abstract
The stress-inducible non-proteinogenic amino acid γ-aminobutyric acid (GABA) is known to alleviate several (a)biotic stresses in plants. GABA forms an important link between carbon and nitrogen metabolism and has been proposed as a signalling molecule in plants. Here, we set out to establish GABA as a priming compound against Botrytis cinerea in Arabidopsis thaliana and how metabolism and reactive oxygen species (ROS) are influenced after GABA treatment and infection. We show that GABA already primes disease resistance at low concentrations (100 µM), comparable to the well-characterized priming agent β-Aminobutyric acid (BABA). Treatment with GABA reduced ROS burst in response to flg22 (bacterial peptide derived from flagellum) and oligogalacturonides (OGs). Plants treated with GABA showed reduced H2O2 accumulation after infection due to increased activity of catalase and guaiacol peroxidase. Contrary to 100 µM GABA treatments, 1 mM exogenous GABA induced endogenous GABA before and after infection. Strikingly, 1 mM GABA promoted total and active nitrate reductase activity whereas 100 µM inhibited active nitrate reductase. Sucrose accumulated after GABA treatment, whereas glucose and fructose only accumulated in treated plants after infection. We propose that extracellular GABA signalling and endogenous metabolism can be separated at low exogenous concentrations.
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