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Chamba G, Rissanen M, Barthelmeß T, Saiz-Lopez A, Rose C, Iyer S, Saint-Macary A, Rocco M, Safi K, Deppeler S, Barr N, Harvey M, Engel A, Dunne E, Law CS, Sellegri K. Evidence of nitrate-based nighttime atmospheric nucleation driven by marine microorganisms in the South Pacific. Proc Natl Acad Sci U S A 2023; 120:e2308696120. [PMID: 37991941 PMCID: PMC10691324 DOI: 10.1073/pnas.2308696120] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2023] [Accepted: 10/04/2023] [Indexed: 11/24/2023] Open
Abstract
Our understanding of ocean-cloud interactions and their effect on climate lacks insight into a key pathway: do biogenic marine emissions form new particles in the open ocean atmosphere? Using measurements collected in ship-borne air-sea interface tanks deployed in the Southwestern Pacific Ocean, we identified new particle formation (NPF) during nighttime that was related to plankton community composition. We show that nitrate ions are the only species for which abundance could support NPF rates in our semicontrolled experiments. Nitrate ions also prevailed in the natural pristine marine atmosphere and were elevated under higher sub-10 nm particle concentrations. We hypothesize that these nucleation events were fueled by complex, short-term biogeochemical cycling involving the microbial loop. These findings suggest a new perspective with a previously unidentified role of nitrate of marine biogeochemical origin in aerosol nucleation.
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Affiliation(s)
- Guillaume Chamba
- Université Clermont Auvergne, CNRS, Laboratoire de Météorologie Physique, Clermont-FerrandF-63000, France
| | - Matti Rissanen
- Aerosol Physics Laboratory, Faculty of Engineering and Natural Sciences, University of Tampere, Tampere33720, Finland
- Chemistry Department, Molecular Research Unit, University of Helsinki, Helsinki00014, Finland
| | - Theresa Barthelmeß
- Research Center for Marine Geosciences, Helmholtz Centre for Ocean Research Kiel, Kiel24105, Germany
| | - Alfonso Saiz-Lopez
- Department of Atmospheric Chemistry and Climate, Institute of Physical Chemistry Blas Cabrera, Consejo Superior de Investigaciones Científicas, Madrid28006, Spain
| | - Clémence Rose
- Université Clermont Auvergne, CNRS, Laboratoire de Météorologie Physique, Clermont-FerrandF-63000, France
| | - Siddharth Iyer
- Aerosol Physics Laboratory, Faculty of Engineering and Natural Sciences, University of Tampere, Tampere33720, Finland
| | - Alexia Saint-Macary
- National Institute of Water and Atmospheric Research, Wellington6021, New Zealand
- Department of Marine Sciences, University of Otago, Dunedin9016, New Zealand
| | - Manon Rocco
- Université Clermont Auvergne, CNRS, Laboratoire de Météorologie Physique, Clermont-FerrandF-63000, France
| | - Karl Safi
- National Institute of Water and Atmospheric Research, Hamilton3216, New Zealand
| | - Stacy Deppeler
- National Institute of Water and Atmospheric Research, Wellington6021, New Zealand
| | - Neill Barr
- National Institute of Water and Atmospheric Research, Wellington6021, New Zealand
| | - Mike Harvey
- National Institute of Water and Atmospheric Research, Wellington6021, New Zealand
| | - Anja Engel
- Research Center for Marine Geosciences, Helmholtz Centre for Ocean Research Kiel, Kiel24105, Germany
| | - Erin Dunne
- Commonwealth Scientific and Industrial Research Organisation Environment, AspendaleVIC3195, Australia
| | - Cliff S. Law
- National Institute of Water and Atmospheric Research, Wellington6021, New Zealand
- Department of Marine Sciences, University of Otago, Dunedin9016, New Zealand
| | - Karine Sellegri
- Université Clermont Auvergne, CNRS, Laboratoire de Météorologie Physique, Clermont-FerrandF-63000, France
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Characterization of Aerosol Physical and Optical Properties at the Observatoire Pérenne de l’Environnement (OPE) Site. ATMOSPHERE 2020. [DOI: 10.3390/atmos11020172] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
The Observatoire Pérenne de l’Environnement (OPE) station is a rural background site located in North-Eastern France. Besides emissions from agricultural activities, the site is located far from local emissions but at an even distance from the intense emission zones of Western Germany to the north-east and the Paris area to the south-west. In the paper, we report and analyze almost six years of measurements (1 May 2012 to 31 December 2018) of the optical and physical properties of aerosol particles. Based on aerosol optical and physical measurements combined with air mass back-trajectories, we investigate the dependence of these properties on air mass type. Two distinct equivalent black carbon (EBC) sources—origins-fossil fuel (FF) and biomass burning (BB)— were identified. FF was the dominant source of EBC (>70%) but showed a very marked seasonal variation. BB fraction is found higher during the cold seasons in the order of 35% (0.1 µg m−3) against 17% (0.05 µg m−3) during the warm seasons. The highest EBC and N0.54–1.15 (particles whose diameter ranged from 0.54 to 1.15 µm) median concentrations were observed during the night time and during the cold seasons compared to the warmer seasons, indicating primary sources trapped within a thin boundary layer (BL). A different behavior is found for N10–550 (particles whose diameter ranged from 10 to 550 nm) and coarse mode particles (N1.15–4.5, i.e., particles whose diameter ranged from 1.15 to 4.5 µm) median concentrations, which were observed during the warm seasons compared to the cold seasons, indicating rather biogenic secondary sources for the smaller particles, and potentially primary biogenic sources for the coarse mode particles. The scattering and absorption coefficients and single scattering albedo (SSA) show the same seasonal variations like the ones of N0.54–1.15 concentrations, indicating that particles larger than 500 nm seemed to contribute the most to the optical properties of the aerosol.
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New Particle Formation: A Review of Ground-Based Observations at Mountain Research Stations. ATMOSPHERE 2019. [DOI: 10.3390/atmos10090493] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
New particle formation (NPF) was predicted to contribute to a major fraction of free tropospheric particle number and cloud condensation nuclei (CCN) concentrations by global models. At high altitudes, pre-existing particle concentrations are low, leading to limited condensational sinks for nucleation precursor gases, and temperatures are cooler compared to lower altitudes, whereas radiation is higher. These factors would all be in favor of nucleation to occur with an enhanced frequency at high altitudes. In the present work, long term data from six altitude stations (and four continents) at various altitudes (from 1465 to 5240 m a.s.l) were used to derive statistically relevant NPF features (frequency, formation rates, and growth rates) and seasonal variability. The combined information together with literature data showed that the frequencies of NPF events at the two Southern hemisphere (SH) stations are some of the highest reported thus far (64% and 67%, respectively). There are indications that NPF would be favored at a preferential altitude close to the interface of the free troposphere (FT) with the planetary boundary layer (PBL) and/or at the vicinity with clouds, which otherwise inhibit the occurrence of NPF. Particle formation rates are found to be lower at high altitudes than at low altitude sites, but a higher fraction of particles are formed via the charged pathway (mainly related to positive ions) compared to boundary layer (BL) sites. Low condensational sinks (CS) are not necessarily needed at high altitudes to promote the occurrence of NPF. For stations at altitudes higher than 1000 m a.s.l., higher CSs favor NPF and are thought to be associated with precursor gases needed to initiate nucleation and early growth.
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Dommergue A, Amato P, Tignat-Perrier R, Magand O, Thollot A, Joly M, Bouvier L, Sellegri K, Vogel T, Sonke JE, Jaffrezo JL, Andrade M, Moreno I, Labuschagne C, Martin L, Zhang Q, Larose C. Methods to Investigate the Global Atmospheric Microbiome. Front Microbiol 2019; 10:243. [PMID: 30967843 PMCID: PMC6394204 DOI: 10.3389/fmicb.2019.00243] [Citation(s) in RCA: 27] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2018] [Accepted: 01/29/2019] [Indexed: 11/13/2022] Open
Abstract
The interplay between microbes and atmospheric physical and chemical conditions is an open field of research that can only be fully addressed using multidisciplinary approaches. The lack of coordinated efforts to gather data at representative temporal and spatial scales limits aerobiology to help understand large scale patterns of global microbial biodiversity and its causal relationships with the environmental context. This paper presents the sampling strategy and analytical protocols developed in order to integrate different fields of research such as microbiology, -omics biology, atmospheric chemistry, physics and meteorology to characterize atmospheric microbial life. These include control of chemical and microbial contaminations from sampling to analysis and identification of experimental procedures for characterizing airborne microbial biodiversity and its functioning from the atmospheric samples collected at remote sites from low cell density environments. We used high-volume sampling strategy to address both chemical and microbial composition of the atmosphere, because it can help overcome low aerosol and microbial cell concentrations. To account for contaminations, exposed and unexposed control filters were processed along with the samples. We present a method that allows for the extraction of chemical and biological data from the same quartz filters. We tested different sampling times, extraction kits and methods to optimize DNA yield from filters. Based on our results, we recommend supplementary sterilization steps to reduce filter contamination induced by handling and transport. These include manipulation under laminar flow hoods and UV sterilization. In terms of DNA extraction, we recommend a vortex step and a heating step to reduce binding to the quartz fibers of the filters. These steps have led to a 10-fold increase in DNA yield, allowing for downstream omics analysis of air samples. Based on our results, our method can be integrated into pre-existing long-term monitoring field protocols for the atmosphere both in terms of atmospheric chemistry and biology. We recommend using standardized air volumes and to develop standard operating protocols for field users to better control the operational quality.
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Affiliation(s)
- Aurelien Dommergue
- Institut des Géosciences de l’Environnement, Univ. Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Pierre Amato
- Institut de Chimie de Clermont-Ferrand, UMR6096 CNRS–Université Clermont Auvergne-Sigma, Clermont-Ferrand, France
| | - Romie Tignat-Perrier
- Institut des Géosciences de l’Environnement, Univ. Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
- CNRS UMR 5005, Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Ecully, France
| | - Olivier Magand
- Institut des Géosciences de l’Environnement, Univ. Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Alban Thollot
- Institut des Géosciences de l’Environnement, Univ. Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
- CNRS UMR 5005, Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Ecully, France
| | - Muriel Joly
- Institut de Chimie de Clermont-Ferrand, UMR6096 CNRS–Université Clermont Auvergne-Sigma, Clermont-Ferrand, France
| | - Laetitia Bouvier
- Laboratory for Meteorological Physics (LaMP), Université Clermont Auvergne, Clermont-Ferrand, France
| | - Karine Sellegri
- Laboratory for Meteorological Physics (LaMP), Université Clermont Auvergne, Clermont-Ferrand, France
| | - Timothy Vogel
- CNRS UMR 5005, Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Ecully, France
| | - Jeroen E. Sonke
- Géosciences Environnement Toulouse, Centre National de la Recherche Scientifique, Institut de Recherche pour le Développement, Université de Toulouse, Toulouse, France
| | - Jean-Luc Jaffrezo
- Institut des Géosciences de l’Environnement, Univ. Grenoble Alpes, CNRS, IRD, Grenoble INP, Grenoble, France
| | - Marcos Andrade
- Laboratory for Atmospheric Physics, Institute for Physics Research, Universidad Mayor de San Andrés, La Paz, Bolivia
- Department of Atmospheric and Oceanic Sciences, University of Maryland, College Park, MD, United States
| | - Isabel Moreno
- Laboratory for Atmospheric Physics, Institute for Physics Research, Universidad Mayor de San Andrés, La Paz, Bolivia
| | | | - Lynwill Martin
- South African Weather Service, Stellenbosch, South Africa
| | - Qianggong Zhang
- Key Laboratory of Tibetan Environment Changes and Land Surface Processes, Institute of Tibetan Plateau Research, Chinese Academy of Sciences, Beijing, China
| | - Catherine Larose
- CNRS UMR 5005, Environmental Microbial Genomics, Laboratoire Ampère, École Centrale de Lyon, Université de Lyon, Ecully, France
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Surface and Tropospheric Water Vapor Variability and Decadal Trends at Two Supersites of CO-PDD (Cézeaux and Puy de Dôme) in Central France. ATMOSPHERE 2018. [DOI: 10.3390/atmos9080302] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
We present an analysis of decadal in situ and remote sensing observations of water vapor over the Cézeaux and puy de Dôme, located in central France (45° N, 3° E), in order to document the variability, cycles and trends of surface and tropospheric water vapor at different time scales and the geophysical processes responsible for the water vapor distributions. We use meteorological stations, GPS (Global Positioning System), and lidar datasets, supplemented with three remote sources of water vapor (COSMIC-radio-occultation, ERA-interim-ECMWF numerical model, and AIRS-satellite). The annual cycle of water vapor is clearly established for the two sites of different altitudes and for all types of measurement. Cezeaux and puy de Dôme present almost no diurnal cycle, suggesting that the variability of surface water vapor at this site is more influenced by a sporadic meteorological system than by regular diurnal variations. The lidar dataset shows a greater monthly variability of the vertical distribution than the COSMIC and AIRS satellite products. The Cézeaux site presents a positive trend for the GPS water vapor total column (0.42 ± 0.45 g·kg−1/decade during 2006–2017) and a significant negative trend for the surface water vapor mixing ratio (−0.16 ± 0.09 mm/decade during 2002–2017). The multi-linear regression analysis shows that continental forcings (East Atlantic Pattern and East Atlantic-West Russia Pattern) have a greater influence than oceanic forcing (North Atlantic Oscillation) on the water vapor variations.
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