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Au-Yeung C, Lam KL, Choi MH, Chan KW, Cheung YS, Tsui YL, Mo WY. Impact of Prophylactic Antibiotic Use in Ornamental Fish Tanks on Microbial Communities and Pathogen Selection in Carriage Water in Hong Kong Retail Shops. Microorganisms 2024; 12:1184. [PMID: 38930567 PMCID: PMC11205468 DOI: 10.3390/microorganisms12061184] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2024] [Revised: 05/28/2024] [Accepted: 06/06/2024] [Indexed: 06/28/2024] Open
Abstract
Antibiotics are routinely added to ornamental fish tanks for treating bacterial infection or as a prophylactic measure. However, the overuse or subtherapeutical application of antibiotics could potentially facilitate the selection of antibiotic resistance in bacteria, yet no studies have investigated antibiotic use in the retail ornamental fish sector and its impact on microbial communities. The present study analyzed the concentrations of twenty antibiotics in the carriage water (which also originates from fish tanks in retail shops) collected monthly from ten local ornamental fish shops over a duration of three months. The antibiotic concentrations were correlated with the sequenced microbial community composition, and the risk of resistance selection in bacteria was assessed. Results revealed that the detected concentrations of tetracyclines were the highest among samples, followed by fluoroquinolones and macrolides. The concentrations of oxytetracycline (44.3 to 2,262,064.2 ng L-1) detected across three months demonstrated a high risk for resistance selection at most of the sampled shops. Zoonotic pathogens (species of Rhodococcus, Legionella, and Citrobacter) were positively correlated with the concentrations of oxytetracycline, tetracycline, chlortetracycline, and enrofloxacin. This suggests that antibiotic use in retail shops may increase the likelihood of selecting for zoonotic pathogens. These findings shed light on the potential for ornamental fish retail shops to create a favorable environment for the selection of pathogens with antibiotics, thereby highlighting the urgent need for enhanced antibiotic stewardship within the industry.
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Affiliation(s)
- Chun Au-Yeung
- Department of Applied Science, School of Science and Technology, Hong Kong Metropolitan University, Ho Man Tin, Kowloon, Hong Kong; (C.A.-Y.); (K.-L.L.); (M.-H.C.); (K.-W.C.); (Y.-L.T.)
- Department of Food Science and Nutrition, Faculty of Science, The Hong Kong Polytechnic University, Hung Hum, Kowloon, Hong Kong;
| | - Kit-Ling Lam
- Department of Applied Science, School of Science and Technology, Hong Kong Metropolitan University, Ho Man Tin, Kowloon, Hong Kong; (C.A.-Y.); (K.-L.L.); (M.-H.C.); (K.-W.C.); (Y.-L.T.)
| | - Man-Hay Choi
- Department of Applied Science, School of Science and Technology, Hong Kong Metropolitan University, Ho Man Tin, Kowloon, Hong Kong; (C.A.-Y.); (K.-L.L.); (M.-H.C.); (K.-W.C.); (Y.-L.T.)
| | - Ka-Wai Chan
- Department of Applied Science, School of Science and Technology, Hong Kong Metropolitan University, Ho Man Tin, Kowloon, Hong Kong; (C.A.-Y.); (K.-L.L.); (M.-H.C.); (K.-W.C.); (Y.-L.T.)
| | - Yu-Sum Cheung
- Department of Food Science and Nutrition, Faculty of Science, The Hong Kong Polytechnic University, Hung Hum, Kowloon, Hong Kong;
| | - Yat-Lai Tsui
- Department of Applied Science, School of Science and Technology, Hong Kong Metropolitan University, Ho Man Tin, Kowloon, Hong Kong; (C.A.-Y.); (K.-L.L.); (M.-H.C.); (K.-W.C.); (Y.-L.T.)
| | - Wing-Yin Mo
- Department of Applied Science, School of Science and Technology, Hong Kong Metropolitan University, Ho Man Tin, Kowloon, Hong Kong; (C.A.-Y.); (K.-L.L.); (M.-H.C.); (K.-W.C.); (Y.-L.T.)
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Thibodeau AJ, Barret M, Mouchet F, Nguyen VX, Pinelli E. The potential contribution of aquatic wildlife to antibiotic resistance dissemination in freshwater ecosystems: A review. ENVIRONMENTAL POLLUTION (BARKING, ESSEX : 1987) 2024; 350:123894. [PMID: 38599270 DOI: 10.1016/j.envpol.2024.123894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2023] [Revised: 03/26/2024] [Accepted: 03/27/2024] [Indexed: 04/12/2024]
Abstract
Antibiotic resistance (AR) is one of the major health threats of our time. The presence of antibiotics in the environment and their continuous release from sewage treatment plants, chemical manufacturing plants and animal husbandry, agriculture and aquaculture, result in constant selection pressure on microbial organisms. This presence leads to the emergence, mobilization, horizontal gene transfer and a selection of antibiotic resistance genes, resistant bacteria and mobile genetic elements. Under these circumstances, aquatic wildlife is impacted in all compartments, including freshwater organisms with partially impermeable microbiota. In this narrative review, recent advancements in terms of occurrence of antibiotics and antibiotic resistance genes in sewage treatment plant effluents source compared to freshwater have been examined, occurrence of antibiotic resistance in wildlife, as well as experiments on antibiotic exposure. Based on this current state of knowledge, we propose the hypothesis that freshwater aquatic wildlife may play a crucial role in the dissemination of antibiotic resistance within the environment. Specifically, we suggest that organisms with high bacterial density tissues, which are partially isolated from the external environment, such as fishes and amphibians, could potentially be reservoirs and amplifiers of antibiotic resistance in the environment, potentially favoring the increase of the abundance of antibiotic resistance genes and resistant bacteria. Potential avenues for further research (trophic transfer, innovative exposure experiment) and action (biodiversity eco-engineering) are finally proposed.
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Affiliation(s)
- Alexandre J Thibodeau
- CRBE, Centre de Recherche sur la Biodiversité et l'Environnement, UMR5300, 31326 Auzeville-Tolosane, Av. de l'Agrobiopole, France.
| | - Maialen Barret
- CRBE, Centre de Recherche sur la Biodiversité et l'Environnement, UMR5300, 31326 Auzeville-Tolosane, Av. de l'Agrobiopole, France
| | - Florence Mouchet
- CRBE, Centre de Recherche sur la Biodiversité et l'Environnement, UMR5300, 31326 Auzeville-Tolosane, Av. de l'Agrobiopole, France
| | - Van Xuan Nguyen
- CRBE, Centre de Recherche sur la Biodiversité et l'Environnement, UMR5300, 31326 Auzeville-Tolosane, Av. de l'Agrobiopole, France
| | - Eric Pinelli
- CRBE, Centre de Recherche sur la Biodiversité et l'Environnement, UMR5300, 31326 Auzeville-Tolosane, Av. de l'Agrobiopole, France
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Yanestria SM, Effendi MH, Tyasningsih W, Moses IB, Khairullah AR, Kurniawan SC, Dameanti FNAEP, Ikaratri R, Pratama JWA, Sigit M, Hasib A, Silaen OSM. Antimicrobial resistance patterns and genes of Campylobacter jejuni isolated from chickens in Pasuruan, Indonesia. Open Vet J 2024; 14:759-768. [PMID: 38682147 PMCID: PMC11052610 DOI: 10.5455/ovj.2024.v14.i3.2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2023] [Accepted: 02/14/2024] [Indexed: 05/01/2024] Open
Abstract
Background Poultry is one of the most prominent sources of Campylobacter jejuni, which is also a major means of transmission to people. Campylobacter jejuni contamination in chicken meat comes from chicken feces because it naturally exists in the intestines of chickens. Aim The purpose of this study is to identify the antibiotic resistance patterns and genes of C. jejuni, which was found in chickens in Pasuruan, Indonesia. Methods The samples used in this study were 200 contents of the small intestine of broiler chickens from 40 farms in Pasuruan Regency. The enriched sample was streaked on the selective media of modified charcoal cefoperazone deoxycholate agar containing the CCDA selective supplement. Antimicrobial susceptibility test utilizing the Kirby-Bauer diffusion test method in accordance with Clinical and Laboratory Standards Institute standards. The polymerase chain reaction (PCR) method was used to detect the (hipO), which encodes the C. jejuni strain, fluoroquinolone resistance (gyrA), beta-lactam resistance (blaOXA-61), and tetracycline resistance (tetO) genes. Results The findings revealed a 14% (28/200) prevalence of C. jejuni in the small intestine of broiler chickens. These isolates showed high resistance to enrofloxacin (92.9%). All isolates (100%) were susceptible to amoxicillin-clavulanate. The PCR results showed all C. jejuni isolates (100%) detected the gyrA gene, 96.4% detected the blaOXA-61 gene, and 50% detected the tetO gene. Conclusion The findings of antimicrobial resistance at a high level from the small intestine of broiler chickens illustrate the potential threat to human health. To lessen the effects now and in the future, coordinated and suitable action is needed, as well as steps to guarantee the poultry industry's economic survival and public health insurance.
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Affiliation(s)
- Sheila Marty Yanestria
- Doctoral Program in Veterinary Science, Faculty of Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia
| | - Mustofa Helmi Effendi
- Division of Veterinary Public Health, Faculty of Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia
| | - Wiwiek Tyasningsih
- Division of Veterinary Microbiology, Faculty of Veterinary Medicine, Universitas Airlangga, Surabaya, Indonesia
| | - Ikechukwu Benjamin Moses
- Department of Applied Microbiology, Faculty of Science, Ebonyi State University, Abakaliki, Nigeria
| | - Aswin Rafif Khairullah
- Research Center for Veterinary Science, National Research and Innovation Agency (BRIN), Bogor, Indonesia
| | - Shendy Canadya Kurniawan
- Master Program of Animal Sciences, Department of Animal Sciences, Specialisation in Molecule, Cell and Organ Functioning, Wageningen University and Research, Wageningen, The Netherlands
| | | | - Rosmita Ikaratri
- Bacteriology Laboratory, Balai Besar Veteriner Wates, Yogyakarta, Indonesia
| | - Junianto Wika Adi Pratama
- Doctoral Program in Veterinary Science, Faculty of Veterinary Medicine, Universitas Gadjah Mada, Yogyakarta, Indonesia
| | - Miarsono Sigit
- Division of Animal Husbandry, Faculty of Veterinary Medicine, Universitas Wijaya Kusuma Surabaya, Surabaya, Indonesia
| | - Abdullah Hasib
- School of Agriculture and Food Sustainability, The University of Queensland, Gatton, Australia
| | - Otto Sahat Martua Silaen
- Doctoral Program in Biomedical Science, Faculty of Medicine, Universitas Indonesia, Jakarta, Indonesia
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Bakiyev S, Smekenov I, Zharkova I, Kobegenova S, Sergaliyev N, Absatirov G, Bissenbaev A. Characterization of atypical pathogenic Aeromonas salmonicida isolated from a diseased Siberian sturgeon ( Acipenser baerii). Heliyon 2023; 9:e17775. [PMID: 37483743 PMCID: PMC10359828 DOI: 10.1016/j.heliyon.2023.e17775] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/07/2023] [Revised: 06/12/2023] [Accepted: 06/28/2023] [Indexed: 07/25/2023] Open
Abstract
Acipenser baerii (Siberian sturgeon) is native to Kazakhstan and is currently endangered and is listed within the first class of protected animals. Sturgeon aquaculture is becoming an important tool for the recovery of this endangered species. Nonetheless, diseases involving typical symptoms of skin ulceration and systemic bacterial hemorrhagic septicemia have occurred in cultured A. baerii on a fish farm located in Western Kazakhstan. In this study, an infectious strain of bacteria isolated from an ulcer of diseased A. baerii was identified as Aeromonas salmonicida (strain AB001). This identification involved analyses of 16S rRNA, gyrB, rpoD, and flaA genes' sequences. Even though strain AB001 belongs to A. salmonicida, it exhibited noticeable mobility and growth at temperatures of ≥37 °C. Profiling of virulence genes uncovered the presence of seven such genes related to pathogenicity. Antibiotic sensitivity testing showed that the strain is sensitive to aminoglycosides, amphenicols, nitrofurans, quinolones, and tetracyclines. Half-lethal doses (LD50) of strain AB001 for Oreochromis mossambicus and A. baerii were determined: respectively 1.7 × 108 and 7.2 × 107 colony-forming units per mL. The experimentally induced infection revealed that strain AB001 causes considerable histological lesions in O. mossambicus, including tissue degeneration, necrosis, and hemorrhages of varied severity.
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Affiliation(s)
- Serik Bakiyev
- Department of Molecular Biology and Genetics, Faculty of Biology and Biotechnology, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Scientific Research Institute of Biology and Biotechnology Problems, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Izat Smekenov
- Department of Molecular Biology and Genetics, Faculty of Biology and Biotechnology, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Scientific Research Institute of Biology and Biotechnology Problems, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Irina Zharkova
- Department of Biodiversity and Bioresources, Faculty of Biology and Biotechnology, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Saidina Kobegenova
- Department of Biodiversity and Bioresources, Faculty of Biology and Biotechnology, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
| | - Nurlan Sergaliyev
- Makhambet Utemisov West Kazakhstan University, Uralsk 090000, Kazakhstan
| | - Gaisa Absatirov
- West Kazakhstan Innovation and Technological University, Uralsk 090000, Kazakhstan
| | - Amangeldy Bissenbaev
- Department of Molecular Biology and Genetics, Faculty of Biology and Biotechnology, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
- Scientific Research Institute of Biology and Biotechnology Problems, al-Farabi Kazakh National University, Almaty 050040, Kazakhstan
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Caioni G, Benedetti E, Perugini M, Amorena M, Merola C. Personal Care Products as a Contributing Factor to Antimicrobial Resistance: Current State and Novel Approach to Investigation. Antibiotics (Basel) 2023; 12:724. [PMID: 37107085 PMCID: PMC10135053 DOI: 10.3390/antibiotics12040724] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/18/2023] [Revised: 03/31/2023] [Accepted: 04/07/2023] [Indexed: 04/29/2023] Open
Abstract
Antimicrobial resistance (AMR) is one of the world's industrialized nations' biggest issues. It has a significant influence on the ecosystem and negatively affects human health. The overuse of antibiotics in the healthcare and agri-food industries has historically been defined as a leading factor, although the use of antimicrobial-containing personal care products plays a significant role in the spread of AMR. Lotions, creams, shampoos, soaps, shower gels, toothpaste, fragrances, and other items are used for everyday grooming and hygiene. However, in addition to the primary ingredients, additives are included to help preserve the product by lowering its microbial load and provide disinfection properties. These same substances are released into the environment, escaping traditional wastewater treatment methods and remaining in ecosystems where they contact microbial communities and promote the spread of resistance. The study of antimicrobial compounds, which are often solely researched from a toxicological point of view, must be resumed considering the recent discoveries, to highlight their contribution to AMR. Parabens, triclocarban, and triclosan are among the most worrying chemicals. To investigate this issue, more effective models must be chosen. Among them, zebrafish is a crucial study system because it allows for the assessment of both the risks associated with exposure to these substances as well as environmental monitoring. Furthermore, artificial intelligence-based computer systems are useful in simplifying the handling of antibiotic resistance data and speeding up drug discovery processes.
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Affiliation(s)
- Giulia Caioni
- Department of Life, Health and Environmental Sciences, University of L’Aquila, 67100 L’Aquila, Italy;
| | - Elisabetta Benedetti
- Department of Life, Health and Environmental Sciences, University of L’Aquila, 67100 L’Aquila, Italy;
| | - Monia Perugini
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Via Balzarini 1, 64100 Teramo, Italy; (M.P.); (M.A.); (C.M.)
| | - Michele Amorena
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Via Balzarini 1, 64100 Teramo, Italy; (M.P.); (M.A.); (C.M.)
| | - Carmine Merola
- Department of Bioscience and Technology for Food, Agriculture and Environment, University of Teramo, Via Balzarini 1, 64100 Teramo, Italy; (M.P.); (M.A.); (C.M.)
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Antibiotic Susceptibility of Bacterial Pathogens That Infect Olive Flounder (Paralichthys olivaceus) Cultivated in Korea. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:ijerph19138110. [PMID: 35805768 PMCID: PMC9265876 DOI: 10.3390/ijerph19138110] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 06/18/2022] [Accepted: 06/28/2022] [Indexed: 01/27/2023]
Abstract
Paralichthys olivaceus (olive flounder) is widely cultivated in Korea. However, data on the antibiotic susceptibility of bacterial pathogens that infect olive flounders in Korea are limited. The susceptibility of 84 strains of 3 pathogenic bacteria (Streptococcus spp., Vibrio spp., and Edwardsiella piscicida) to 18 antibiotics was tested using the minimum inhibitory concentration (MIC) panels, and the distribution of the MIC values for each species was confirmed. Among the panel antibiotics, nine commonly used antibiotics were selected, and the multiple antibiotic resistance (MAR) index and antibiotic resistance pattern were indicated using the disk diffusion method. It was confirmed that most of the isolates had a MAR index greater than 0.2, indicating a high-risk source. The distribution patterns of the MIC values and resistance pattern between gram-positive and gram-negative bacteria showed slightly different results. Ampicillin, erythromycin, and clindamycin were more effective against gram-positive bacteria than gram-negative bacteria. However, the MIC values of flumequine for gram-positive bacteria were higher than those of gram-negative bacteria. Through the distribution patterns of the MIC values and resistance patterns presented in this study, the need for monitoring the multidrug-resistant bacteria in aquaculture is emphasised.
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Qiu W, Liu T, Liu X, Chen H, Luo S, Chen Q, Magnuson JT, Zheng C, Xu EG, Schlenk D. Enrofloxacin Induces Intestinal Microbiota-Mediated Immunosuppression in Zebrafish. ENVIRONMENTAL SCIENCE & TECHNOLOGY 2022; 56:8428-8437. [PMID: 35545936 PMCID: PMC9228068 DOI: 10.1021/acs.est.1c08712] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Revised: 03/15/2022] [Accepted: 05/03/2022] [Indexed: 05/19/2023]
Abstract
The immunosuppressive effects of antibiotics and the potential associations with the intestinal microbiota of the host have been increasingly recognized in recent years. However, the detailed underlying mechanisms of immune interference of antibiotics in environmental organisms remain unclear, particularly at the early life stage of high sensitivity. To better understand the gut microbiome and immune function interactions, the vertebrate model, zebrafish, was treated with environmentally relevant concentrations of a frequently detected antibiotic, enrofloxacin (ENR), ranging from 0.01 to 100 μg/L. 16S ribosomal RNA sequencing indicated diminished diversity, richness, and evenness of intestinal flora following ENR treatment. Twenty-two taxa of gut bacteria including Rickettsiales, Pseudomonadales, and Flavobacteriales were significantly correlated with immunosuppressive biomarkers, including a significant decrease in the abundance of macrophages and neutrophils. To validate the immunomodulatory effects due to altered intestinal microbial populations, zebrafish reared under sterile and non-sterile husbandry conditions were compared after ENR treatment. A significant inhibitory effect was induced by ENR treatment under non-sterile conditions, while the number of macrophages and neutrophils, as well as biomarkers of immunosuppressive effects, were significantly salved in zebrafish under sterile conditions, confirming for the first time that immunosuppression by ENR was closely mediated through alterations of the intestinal microbiome in fish.
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Affiliation(s)
- Wenhui Qiu
- School
of Public Health and Emergency Management, Southern University of Science and Technology, Shenzhen 518055, China
- State
Environmental Protection Key Laboratory of Integrated Surface Water-Groundwater
Pollution Control, Guangdong Provincial Key Laboratory of Soil and
Groundwater Pollution Control, School of Environmental Science and
Engineering, Southern University of Science
and Technology, Shenzhen 518055, China
| | - Tang Liu
- State
Environmental Protection Key Laboratory of Integrated Surface Water-Groundwater
Pollution Control, Guangdong Provincial Key Laboratory of Soil and
Groundwater Pollution Control, School of Environmental Science and
Engineering, Southern University of Science
and Technology, Shenzhen 518055, China
| | - Xinjie Liu
- State
Environmental Protection Key Laboratory of Integrated Surface Water-Groundwater
Pollution Control, Guangdong Provincial Key Laboratory of Soil and
Groundwater Pollution Control, School of Environmental Science and
Engineering, Southern University of Science
and Technology, Shenzhen 518055, China
| | - Honghong Chen
- State
Environmental Protection Key Laboratory of Integrated Surface Water-Groundwater
Pollution Control, Guangdong Provincial Key Laboratory of Soil and
Groundwater Pollution Control, School of Environmental Science and
Engineering, Southern University of Science
and Technology, Shenzhen 518055, China
| | - Shusheng Luo
- State
Environmental Protection Key Laboratory of Integrated Surface Water-Groundwater
Pollution Control, Guangdong Provincial Key Laboratory of Soil and
Groundwater Pollution Control, School of Environmental Science and
Engineering, Southern University of Science
and Technology, Shenzhen 518055, China
| | - Qiqing Chen
- State
Key Laboratory of Estuarine and Coastal Research, East China Normal University, Shanghai 200241, China
| | - Jason T. Magnuson
- Department
of Chemistry, Bioscience and Environmental Engineering, University of Stavanger, Stavanger 4021, Norway
| | - Chunmiao Zheng
- State
Environmental Protection Key Laboratory of Integrated Surface Water-Groundwater
Pollution Control, Guangdong Provincial Key Laboratory of Soil and
Groundwater Pollution Control, School of Environmental Science and
Engineering, Southern University of Science
and Technology, Shenzhen 518055, China
| | - Elvis Genbo Xu
- Department
of Biology, University of Southern Denmark, Odense 5230, Denmark
| | - Daniel Schlenk
- Department
of Environmental Sciences, University of
California, Riverside, California 92521, United States
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Distribution and Transfer of Antibiotic Resistance Genes in Coastal Aquatic Ecosystems of Bohai Bay. WATER 2022. [DOI: 10.3390/w14060938] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/27/2023]
Abstract
Antibiotic resistance genes (ARGs) are abundant in diverse ecosystems and the resistome may constitute a health threat for humans and animals. It is necessary to uncover ARGs and the accumulation mechanisms from different environmental sources. Various habitats, such as soil, seawater and fish intestines, could overflow a considerable amount of ARGs and the horizontal transfer of ARGs may occur in these environments. Thus, we assessed the composition and abundance of ARGs in seawater, soil and intestinal tracts of Cynoglossus semilaevis collected from different sites in Bohai Bay (China), including a natural area and three fish farms, through a high-throughput qPCR array. In total, 243 ARGs were uncovered, governing the resistance to aminoglycoside, multidrug, beta-lactamase, macrolide lincosamide streptomycin B (MLSB), chloramphenicol, sulfonamide, tetracycline, vancomycin and other antibiotics. The action mechanisms of these ARGs were mainly antibiotic deactivation, efflux pump and cellular protection. Importantly, similar ARGs were detected in different samples but show dissimilar enrichment levels. ARGs were highly enriched in the fish farms compared to the natural sea area, with more genes detected, while some ARGs were detected only in the natural sea area samples, such as bacA-02, tetL-01 and ampC-06. Regarding sample types, water samples from all locations shared more ARGs in common and held the highest average level of ARGs detected than in the soil and fish samples. Mobile genetic elements (MGEs) were also detected in three sample types, in the same trend as ARGs. This is the first study comparing the resistome of different samples of seawater, soil and intestines of C. semilaevis. This study contributes to a better understanding of ARG dissemination in water sources and could facilitate the effective control of ARG contamination in the aquatic environment.
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