Functional Characterization of a Cucumber (Cucumis sativus L.) Vacuolar Invertase, CsVI1, Involved in Hexose Accumulation and Response to Low Temperature Stress

Genome-wide identification of invertase genes in sweetpotato and its response to nitrogen and planting densities

BACKGROUND

Invertases (INVs) included CWIN, CIN and VIN, are key enzymes in sucrose hydrolysis into glucose and fructose and essential for plant root development. Yet the effects of nitrogen and planting density on IbINVs expression remains unexplored in sweetpotato.

RESULTS

This study identified 22 invertase (IbINV) genes in the sweetpotato genome and conducted comprehensive analyses of their subcellular localization, gene structure, and conserved motifs and domains. Gene Ontology functional and protein interaction network analysis suggested that IbCWIN1/2/5/6 potentially interact with HKL1/3, HXK2/3/4, and other proteins, significantly influencing carbohydrate metabolic functions and biological processes in sweetpotato. Transcriptome data revealed that IbCIN2 and IbVIN3 were highly expressed in fibrous root (FR) and potential storage root (PSR), while IbVIN4 exhibited high expression levels in storage roots (SR), and IbCWIN2 was highly expressed in both FR and SR. Moreover, the field experiments demonstrated that, compared with EN (180 kg N ha-1) combined with LD (50,000 plant ha- 1), MN (120 kg N ha- 1) combined with MD (62,500 plant ha- 1) enhanced storage roots number and weight. Notably, compared with LDEN treatment, IbCIN2, IbCWIN2, IbVIN3 and IbVIN4 under MDMN treatment were significantly upregulated, extremely significant differences at 15DAP, of which IbCIN2 showed a maximum of 23.24-fold change, showing a positive correlation with increased INV enzyme activity, glucose (GLc), and fructose (FRc) content. Additionally, screening of homologous genes showed that IbCIN2 is homologous to AtA/N-INVI and AtA/N-INVG, IbCWIN2, IbVIN3 and IbVIN4 are homologous to VACUOLAR, INVERTASE1 and BFRUCT4, with similar functions, further supporting their involvement in storage root formation and development.

CONCLUSION

These observations underscore the expansion of IbINVs in sweetpotato and provide a theoretical basis for optimizing the interaction between nitrogen application and planting density in sweetpotato, allowing for more efficient nitrogen use and improved growth.

Metabolite analysis of peach (Prunus persica L. Batsch) branches in response to freezing stress

Cold resistance in fruit trees has a direct impact on food production and scientific studies. 'Donghe No.1' is an excellent cold-tolerant peach variety. Metabolomic changes under freezing stress were examined to understand the mechanisms of cold adaptation. The UPLC-MS/MS system was used to identify differentially expressed metabolites (DEMs) in branches of 'Donghe No.1' under freezing stress for 12 h at -5°C, -20°C, -25°C, or -30°C. In total, 1096 metabolites and 196 DEMs were obtained at -5°C vs -20°C, -25°C, and - 30°C, while 179 DEMs and eight shared DEMs obtained at -5°C vs -20°C, -20°C vs -25°C, and -25°C vs -30°C. KEGG enrichment identified 196 DEMs associated with amino acid metabolism, linoleic acid metabolism, alpha-linolenic acid metabolism, phenylpropanoid biosynthesis, and flavonoid biosynthesis under freezing stress. A metabolic network in 1-year-old peach branches under freezing stress is proposed. Moreover, these results enhance understanding of metabolite responses and mechanisms to freezing stress in peach and will help in future breeding of freezing-tolerant varieties and investigating tolerance mechanisms.

Exogenous glucose irrigation alleviates cold stress by regulating soluble sugars, ABA and photosynthesis in melon seedlings

Melon (Cucumis melo L.) is an important economic crop and widely planted around the world. Cold stress severely limits its development and yield. Carbohydrates play multiple roles in plant cold tolerance. However, little is known in melon. Based on the metabolome analysis, a total of 635 metabolites were identified upon cold stress in melon seedlings. KEGG analysis shows that differential metabolites were mainly enriched in the glycolysis/gluconeogenesis pathway and pentose phosphate pathway, with glucose being one of the most prominent metabolites. To further investigate the role of glucose in cold tolerance of melon seedlings. We found that root irrigation was more effective than foliar spraying for exogenous glucose application, with optimal concentrations of 0.5% and 1% for cold-tolerant and cold-sensitive genotypes, respectively. Glucose irrigation mainly promoted soluble sugar accumulation to reduce cold damage in melon seedlings. For cold-sensitive genotype, only the sucrose content could be increased, while for cold-tolerant genotype, sucrose, fructose and glucose content could be simultaneously increased. Meanwhile, glucose irrigation recruited ABA not antioxidant enzyme system to cope with cold stress. Hence, glucose watering could improve the maximum photochemical efficiency of seedling photosystem II (Fv/Fm), alleviate physiological drought, reduce the accumulation of malondialdehyde, and accelerated the photosynthetic efficiency of melon seedlings. Based on coefficient of variation and principal component analysis, it was confirmed again that glucose irrigation did alter the strategies for withstanding cold stress and enhance the cold tolerance of melon seedlings. Thus, the results would provide a theoretical basis and feasible measures to protect melon seedings from cold damage.

Genome-Wide Identification and Expression Patterns of Cucumber Invertases and Their Inhibitor Genes

Invertases and their inhibitors play important roles in sucrose metabolism, growth and development, signal transduction, and biotic and abiotic stress tolerance in many plant species. However, in cucumber, both the gene members and functions of invertase and its inhibitor families remain largely unclear. In this study, in comparison with the orthologues of Citrullus lanatus (watermelon), Cucumis melo (melon), and Arabidopsis thaliana (Arabidopsis), 12 invertase genes and 12 invertase inhibitor genes were identified from the genome of Cucumis sativus (cucumber). Among them, the 12 invertase genes were classified as 4 cell wall invertases, 6 cytoplasmic invertases, and 2 vacuolar invertases. Most invertase genes were conserved in cucumber, melon, and watermelon, with several duplicate genes in melon and watermelon. Transcriptome analysis distinguished these genes into various expression patterns, which included genes CsaV3_2G025540 and CsaV3_2G007220, which were significantly expressed in different tissues, organs, and development stages, and genes CsaV3_7G034730 and CsaV3_5G005910, which might be involved in biotic and abiotic stress. Six genes were further validated in cucumber based on quantitative real-time PCR (qRT-PCR), and three of them showed consistent expression patterns as revealed in the transcriptome. These results provide important information for further studies on the physiological functions of cucumber invertases (CSINVs) and their inhibitors (CSINHs).

Multiscale QM/MM Simulations Identify the Roles of Asp239 and 1-OH···Nucleophile in Transition State Stabilization in Arabidopsis thaliana Cell-Wall Invertase 1

Arabidopsis thaliana cell-wall invertase 1 (AtCWIN1), a key enzyme in sucrose metabolism in plants, catalyzes the hydrolysis of sucrose into fructose and glucose. AtCWIN1 belongs to the glycoside hydrolase GH-J clan, where two carboxylate residues (Asp23 and Glu203 in AtCWIN1) are well documented as a nucleophile and an acid/base catalyst. However, details at the atomic level about the role of neighboring residues and enzyme-substrate interactions during catalysis are not fully understood. Here, quantum mechanical/molecular mechanical (QM/MM) free-energy simulations were carried out to clarify the origin of the observed decreased rates in Asp239Ala, Asp239Asn, and Asp239Phe in AtCWIN1 compared to the wild type and delineate the role of Asp239 in catalysis. The glycosylation and deglycosylation steps were considered in both wild type and mutants. Deglycosylation is predicted to be the rate-determining step in the reaction, with a calculated overall free-energy barrier of 15.9 kcal/mol, consistent with the experimental barrier (15.3 kcal/mol). During the reaction, the -1 furanosyl ring underwent a conformational change corresponding to 3E ↔ [E2]⧧ ↔ 1E according to the nomenclature of saccharide structures along the full catalytic reaction. Asp239 was found to stabilize not only the transition state but also the fructosyl-enzyme intermediate, which explains findings from previous structural and mutagenesis experiments. The 1-OH···nucleophile interaction has been found to provide an important contribution to the transition state stabilization, with a contribution of ∼7 kcal/mol, and affected glycosylation more significantly than deglycosylation. This study provides molecular insights that improve the current understanding of sucrose binding and hydrolysis in members of clan GH-J, which may benefit protein engineering research. Finally, a rationale on the sucrose inhibitor configuration in chicory 1-FEH IIa, proposed a long time ago in the literature, is also provided based on the QM/MM calculations.

IbInvInh2, a novel invertase inhibitor in sweet potato, regulates starch content through post-translational regulation of vacuolar invertase IbβFRUCT2

As a key enzyme in the starch and sugar metabolic pathways in sweet potato (Ipomoea batatas (L.) Lam.), the vacuolar invertase (EC 3.2.1.26) IbβFRUCT2 is involved in partitioning and modulating the starch and sugar components of the storage root. However, the post-translational regulation of its invertase activity remains unclear. In this study, we identified three invertase inhibitors, IbInvInh1, IbInvInh2, and IbInvInh3, as potential interaction partners of IbβFRUCT2. All were found to act as vacuolar invertase inhibitors (VIFs) and belonged to the plant invertase/pectin methyl esterase inhibitor superfamily. Among the three VIFs, IbInvInh2 is a novel VIF in sweet potato and was confirmed to be an inhibitor of IbβFRUCT2. The N-terminal domain of IbβFRUCT2 and the Thr39 and Leu198 sites of IbInvInh2 were predicted to be engaged in their interactions. The transgenic expression of IbInvInh2 in Arabidopsis thaliana plants reduced the starch content of leaves, while its expression in the Ibβfruct2-expressing Arabidopsis plants increased the starch content of leaves, suggesting that the post-translational inhibition of IbβFRUCT2 activity by IbInvInh2 contributes to the regulation of the plant starch content. Taken together, our findings reveal a novel VIF in sweet potato and provide insights into the potential regulatory roles of the VIFs and invertase-VIF interaction in starch metabolism. These insights lay the foundation for using VIFs to improve the starch properties of crops.

Integrated analysis of transcriptomics and metabolomics of peach under cold stress

Low temperature is one of the environmental factors that restrict the growth and geographical distribution of peach (Prunus persica L. Batsch). To explore the molecular mechanisms of peach brunches in response to cold, we analyzed the metabolomics and transcriptomics of 'Donghe No.1' (cold-tolerant, CT) and '21^st Century' (cold-sensitive, CS) treated by different temperatures (-5 to -30°C) for 12 h. Some cold-responsive metabolites (e.g., saccharides, phenolic acids and flavones) were identified with upregulation only in CT. Further, we identified 1991 cold tolerance associated genes in these samples and they were significantly enriched in the pathways of 'galactose metabolism', 'phenylpropanoid biosynthesis' and 'flavonoids biosynthesis'. Weighted gene correlation network analysis showed that soluble sugar, flavone, and lignin biosynthetic associated genes might play a key role in the cold tolerance of peach. In addition, several key genes (e.g., COMT, CCR, CAD, PER and F3'H) were substantially expressed more in CT than CS under cold stress, indicating that they might be major factors during the adaptation of peach to low temperature. This study will not only improve our understanding towards the molecular mechanisms of peach trees under cold stress but also contribute to the screening and breeding program of peach in the future.

Modulations in protein phosphorylation explain the physiological responses of barley (Hordeum vulgare) to nanoplastics and ZnO nanoparticles

To address the knowledge gap on the effects of the co-existence of nanomaterials on plant growth, barley (Hordeum vulgare L.) plants were irrigated with zinc oxide nanoparticles (0.5 g L^-1), nanoplastics (1 g L^-1), and the combination of these two nanomaterials for 10 days. The co-existence of nanoplastics and ZnO nanoparticles increased H₂O₂ concentration by 12.76% and 38.30%, compared with the ZnO nanoparticles and nanoplastics exposure. The concentration of abscisic acid (ABA) in plants under the co-existence of nanoplastics and ZnO nanoparticles was 29.53% and 10.42% higher than that in ZnO nanoparticles treated plants and nanoplastics treated plants. The global analysis of phosphoproteomics identified 132 phosphorylated proteins and 173 phosphorylation sites in barley leaves exposed to the nanomaterial combination, which were related to photosynthesis, carbon fixation, nitrogen metabolism, and arginine and proline metabolisms. Further physiological analysis indicated that the combination of ZnO nanoparticles and nanoplastics caused larger damage to the systems of antioxidant and carbohydrate metabolisms as exemplified by decreased activities of apoplastic peroxidases (25.10%-48.60%), glutathione reductase (91.07%-94.94%), and sucrose synthase (53.59%-61.19%) in roots and increased cell wall invertase activity (12.97%-17.61%) in leaves, compared with the single nanomaterial treatments. These results indicate that the modulations in protein phosphorylation were closely related to the physiological responses to nanomaterial exposure, suggesting that the co-existence of nanomaterials may lead to greater impacts than single ones.

A Vacuolar Invertase CsVI2 Regulates Sucrose Metabolism and Increases Drought Tolerance in Cucumis sativus L

Vacuolar invertase (VI) can irreversibly degrade sucrose into glucose and fructose and involve in plants abiotic-stress-tolerance. Cucumber (Cucumis sativus L.) is susceptible to drought stress, especially during the seedling stage. To date, the involvement of VI in drought tolerance in cucumber seedlings is in urgent need of exploration. In the present study, a cucumber vacuolar invertase gene, CsVI2, was isolated and functionally characterized. The results showed that (1) CsVI2 showed vacuolar invertase activity both in vivo and in vitro; (2) the transcript level of CsVI2, along with VI activity, was significantly induced by drought stress. Moreover, the expression of sucrose synthase 3 (CsSUS3) was increased and that of sucrose phosphate synthase 1 (CsSPS1) was decreased after exposure to drought stress, which was followed by an increase in sucrose synthase activity and a decrease in sucrose phosphate synthase activity; (3) CsVI2-overexpressing transformed cucumber seedlings showed enhanced vacuolar invertase activity and drought tolerance and 4) protein-protein interaction modelling indicated that a cucumber invertase inhibitor, CsINVINH3, can interact with CsVI2. In summary, the results indicate that CsVI2 as an invertase can regulate sucrose metabolism and enhance drought stress in cucumber seedlings.