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Carnegie L, Raghwani J, Fournié G, Hill SC. Phylodynamic approaches to studying avian influenza virus. Avian Pathol 2023; 52:289-308. [PMID: 37565466 DOI: 10.1080/03079457.2023.2236568] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 06/23/2023] [Accepted: 07/07/2023] [Indexed: 08/12/2023]
Abstract
Avian influenza viruses can cause severe disease in domestic and wild birds and are a pandemic threat. Phylodynamics is the study of how epidemiological, evolutionary, and immunological processes can interact to shape viral phylogenies. This review summarizes how phylodynamic methods have and could contribute to the study of avian influenza viruses. Specifically, we assess how phylodynamics can be used to examine viral spread within and between wild or domestic bird populations at various geographical scales, identify factors associated with virus dispersal, and determine the order and timing of virus lineage movement between geographic regions or poultry production systems. We discuss factors that can complicate the interpretation of phylodynamic results and identify how future methodological developments could contribute to improved control of the virus.
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Affiliation(s)
- L Carnegie
- Department of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, UK
| | - J Raghwani
- Department of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, UK
| | - G Fournié
- Department of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, UK
- Université de Lyon, INRAE, VetAgro Sup, UMR EPIA, Marcy l'Etoile, France
- Université Clermont Auvergne, INRAE, VetAgro Sup, UMR EPIA, Saint Genes Champanelle, France
| | - S C Hill
- Department of Pathobiology and Population Sciences, Royal Veterinary College (RVC), Hatfield, UK
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Petherbridge G, Gadzhiev AA, Shestopalov АМ, Alekseev AY, Sharshov KA, Daudova MG. An early warning system for highly pathogenic viruses borne by waterbird species and related dynamics of climate change in the Caspian Sea region: Outlines of a concept. SOUTH OF RUSSIA: ECOLOGY, DEVELOPMENT 2022. [DOI: 10.18470/1992-1098-2022-2-233-263] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Aim. Formulation of the outlines of the concept of ViEW (Viral Early Warning) which is intended as a long term system of multidisciplinary transboundary cooperation between specialist institutions of all five Caspian region states to research, regularly monitor and share data about the generation, transmission and epidemiology of avian‐borne pathogens and their vectors in the region, and the ways climate change may affect these processes.Material and Methods. The concept is based on the multidisciplinary experience of the authors in researching the processes incorporated in the ViEW concept and on an in‐depth survey of the literature involved.Results. The outlines of the ViEW concept are presented in this study for review and comment by interested parties and stakeholders.Conclusion. Review of activities and opinions of specialists and organizations with remits relating to the development, establishment and maintenance of ViEW, indicates that such a system is a necessity for global animal and human health because of the role that the Caspian region plays in the mass migration of species of waterbird known as vectors for avian influenza and the already evident impacts of climate change on their phenologies. Waterbirds frequenting the Caspian Sea littorals and their habitats together constitute a major potential global hotspot or High Risk region for the generation and transmission of highly pathogenic avian influenza viruses and other dangerous zoonotic diseases.
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Affiliation(s)
| | | | - А. М. Shestopalov
- Research Institute of Virology, Federal Research Centre of Fundamental and Translational Medicine, Siberian Branch, Russian Academy of Sciences
| | - A. Yu. Alekseev
- Research Institute of Virology, Federal Research Centre of Fundamental and Translational Medicine, Siberian Branch, Russian Academy of Sciences
| | - K. A. Sharshov
- Research Institute of Virology, Federal Research Centre of Fundamental and Translational Medicine, Siberian Branch, Russian Academy of Sciences
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Gulyaeva M, Badmaeva E, Yurchenko K, Sharshov K, Sobolev I, Bi Y, Chen J, Shi W, Diulin I, Dorzhiev T, Shestopalov A. Monitoring of Potentially Emerging Pathogens in Wild Birds at Baikal Lake Basin in 2019. ECOHEALTH 2022; 19:335-341. [PMID: 36018399 DOI: 10.1007/s10393-022-01614-7] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/02/2020] [Accepted: 06/24/2022] [Indexed: 06/15/2023]
Affiliation(s)
- Marina Gulyaeva
- FSBSI "The Federal Research Center of Fundamental and Translational Medicine", Timakova str., 2, Novosibirsk, Russia, 630060.
- Novosibirsk State University, Pirogova St., 2, Novosibirsk, Russia, 630090.
| | | | - Kseniya Yurchenko
- FSBSI "The Federal Research Center of Fundamental and Translational Medicine", Timakova str., 2, Novosibirsk, Russia, 630060
| | - Kirill Sharshov
- FSBSI "The Federal Research Center of Fundamental and Translational Medicine", Timakova str., 2, Novosibirsk, Russia, 630060
| | - Ivan Sobolev
- FSBSI "The Federal Research Center of Fundamental and Translational Medicine", Timakova str., 2, Novosibirsk, Russia, 630060
| | - Yuhai Bi
- CAS Key Laboratory of Pathogenic Microbiology and Immunology, Institute of Microbiology, Center for Influenza Research and Early-Warning (CASCIRE), Chinese Academy of Sciences, Beijing, 100101, People's Republic of China
| | - Jianjun Chen
- Wuhan Institute of Virology, Chinese Academy of Sciences, 44 Xiaohongshan, Wuhan, 430071, Hubei, People's Republic of China
| | - Weifeng Shi
- Shandong First Medical University & Shandong Academy of Medical Sciences, Taian, 271016, People's Republic of China
| | - Iliya Diulin
- FSBSI "The Federal Research Center of Fundamental and Translational Medicine", Timakova str., 2, Novosibirsk, Russia, 630060
| | | | - Alexander Shestopalov
- FSBSI "The Federal Research Center of Fundamental and Translational Medicine", Timakova str., 2, Novosibirsk, Russia, 630060
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Wu Q, Li Q, Lu J. A One Health strategy for emerging infectious diseases based on the COVID-19 outbreak. JOURNAL OF BIOSAFETY AND BIOSECURITY 2021; 4:5-11. [PMID: 34729464 PMCID: PMC8552662 DOI: 10.1016/j.jobb.2021.09.003] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2021] [Accepted: 09/26/2021] [Indexed: 11/13/2022] Open
Abstract
Coronavirus disease 2019 (COVID-19) is as an emerging infectious disease (EID) that has caused the worst public health catastrophe of the 21st century thus far. In terms of impact, the COVID-19 pandemic is second only to the Spanish Flu pandemic of 1918 in modern world history. As of 7 September 2021, there have been 220 million confirmed cases of COVID-19 and more than 4.5 million deaths. EIDs pose serious public health and socio-economic risks, and 70% of EIDs originate from wildlife. Preventing development of EIDs such as COVID-19 is a pressing concern. Here, taking the COVID-19 pandemic as an example, we illustrate the disastrous effects of EIDs and assess their emergence and evolution from a One Health perspective. We propose a One Health strategy, centered on ‘moving the gates forward’, for EID prevention and control at the human–animal–environment interface. This strategy may be instructive and provide early warnings of EIDs in the future.
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Affiliation(s)
- Qin Wu
- School of Public Health, Sun Yat-sen University, Guangzhou, China.,Key Laboratory for Tropical Disease Control, Sun Yat-sen University, Ministry of Education, Guangzhou, China.,One Health Center of Excellence for Research and Training, Guangzhou, China.,State Key Laboratory for Surveillance and Evaluation of Vaccines and Biological Products, Guangzhou, China
| | - Qianlin Li
- School of Public Health, Sun Yat-sen University, Guangzhou, China.,Key Laboratory for Tropical Disease Control, Sun Yat-sen University, Ministry of Education, Guangzhou, China.,One Health Center of Excellence for Research and Training, Guangzhou, China.,State Key Laboratory for Surveillance and Evaluation of Vaccines and Biological Products, Guangzhou, China
| | - Jiahai Lu
- School of Public Health, Sun Yat-sen University, Guangzhou, China.,Key Laboratory for Tropical Disease Control, Sun Yat-sen University, Ministry of Education, Guangzhou, China.,One Health Center of Excellence for Research and Training, Guangzhou, China.,State Key Laboratory for Surveillance and Evaluation of Vaccines and Biological Products, Guangzhou, China
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