Metrics of Lidar-Derived 3D Vegetation Structure Reveal Contrasting Effects of Horizontal and Vertical Forest Heterogeneity on Bird Species Richness

Three-Dimensional Habitat Structure Drives Avian Functional and Trait Diversity Across North America

Understanding how three-dimensional (3D) habitat structure drives biodiversity patterns is key to predicting how habitat alteration and loss will affect species and community-level patterns in the future. To date, few studies have contrasted the effects of 3D habitat composition with those of 3D habitat configuration on biodiversity, with existing investigations often limited to measures of taxonomic diversity (i.e., species richness). Here, we examined the influence of Light Detecting and Ranging (LiDAR)-derived 3D habitat structure-both its composition and configuration-on multiple facets of bird diversity. Specifically, we used data from the National Ecological Observatory Network (NEON) to test the associations between 11 measures of 3D habitat structure and avian species richness, functional and trait diversity, and phylogenetic diversity. We found that 3D habitat structure was the most consistent predictor of avian functional and trait diversity, with little to no effect on species richness or phylogenetic diversity. Functional diversity and individual trait characteristics were strongly associated with both 3D habitat composition and configuration, but the magnitude and the direction of the effects varied across the canopy, subcanopy, midstory, and understory vertical strata. Our findings suggest that 3D habitat structure influences avian diversity through its effects on traits. By examining the effects of multiple aspects of habitat structure on multiple facets of avian diversity, we provide a broader framework for future investigations on habitat structure.

Unraveling the Influence of Structural Complexity, Environmental, and Geographic Factors on Multi-Trophic Biodiversity in Forested Landscapes

Multi-trophic diversity is often overlooked in land management decisions due to the absence of cost- and time-effective assessment methods. Here, we introduce a new method to calculate a combined terrain and canopy structural complexity metric using LiDAR data, enabling the prediction of multi-trophic diversity-a combined diversity metric that integrates diversity across trophic levels. We selected 34 forested sites of the National Ecological Observatory Network to test the model by using observed data on plant presence, beetle pitfall trap, and bird count to calculate multi-trophic diversity. Our results show that multi-trophic diversity increases with increasing structural complexity, but this relationship differs across different forest types. The environmental and geographic factors account for about 40% variability in multi-trophic diversity, which further increases to about 60% when combined with structural complexity. This research offers a powerful approach to evaluate biodiversity at a landscape scale using remotely sensed data and highlights the importance of considering multi-trophic diversity in land management decisions.

Artificial light at night is a top predictor of bird migration stopover density

As billions of nocturnal avian migrants traverse North America, twice a year they must contend with landscape changes driven by natural and anthropogenic forces, including the rapid growth of the artificial glow of the night sky. While airspaces facilitate migrant passage, terrestrial landscapes serve as essential areas to restore energy reserves and often act as refugia-making it critical to holistically identify stopover locations and understand drivers of use. Here, we leverage over 10 million remote sensing observations to develop seasonal contiguous United States layers of bird migrant stopover density. In over 70% of our models, we identify skyglow as a highly influential and consistently positive predictor of bird migration stopover density across the United States. This finding points to the potential of an expanding threat to avian migrants: peri-urban illuminated areas may act as ecological traps at macroscales that increase the mortality of birds during migration.

Using satellite data to assess spatial drivers of bird diversity

Birds are useful indicators of overall biodiversity, which continues to decline globally, despite targets to reduce its loss. The aim of this paper is to understand the importance of different spatial drivers for modelling bird distributions. Specifically, it assesses the importance of satellite-derived measures of habitat productivity, heterogeneity and landscape structure for modelling bird diversity across Great Britain. Random forest (RF) regression is used to assess the extent to which a combination of satellite-derived covariates explain woodland and farmland bird diversity and richness. Feature contribution analysis is then applied to assess the relationships between the response variable and the covariates in the final RF models. We show that much of the variation in farmland and woodland bird distributions is explained (R 2 0.64-0.77) using monthly habitat-specific productivity values and landscape structure (FRAGSTATS) metrics. The analysis highlights important spatial drivers of bird species richness and diversity, including high productivity grassland during spring for farmland birds and woodland patch edge length for woodland birds. The feature contribution provides insight into the form of the relationship between the spatial drivers and bird richness and diversity, including when a particular spatial driver affects bird richness positively or negatively. For example, for woodland bird diversity, the May 80th percentile Normalized Difference Vegetation Index (NDVI) for broadleaved woodland has a strong positive effect on bird richness when NDVI is >0.7 and a strong negative effect below. If relationships such as these are stable over time, they offer a useful analytical tool for understanding and comparing the influence of different spatial drivers.

Harmonizing spatial scales and ecological theories to predict avian richness and functional diversity within forest ecosystems

Classic ecological theory has proven that temperature, precipitation and productivity organize ecosystems at broad scales and are generalized drivers of biodiversity within different biomes. At local scales, the strength of these predictors is not consistent across different biomes. To better translate these theories to localized scales, it is essential to determine the links between drivers of biodiversity. Here we harmonize existing ecological theories to increase the predictive power for species richness and functional diversity. We test the relative importance of three-dimensional habitat structure as a link between local and broad-scale patterns of avian richness and functional diversity. Our results indicate that habitat structure is more important than precipitation, temperature and elevation gradients for predicting avian species richness and functional diversity across different forest ecosystems in North America. We conclude that forest structure, influenced by climatic drivers, is essential for predicting the response of biodiversity with future shifts in climatic regimes.

The relative influence of history, climate, topography and vegetation structure on local animal richness varies among taxa and spatial grains

1. Understanding the spatial scales at which environmental factors drive species richness patterns is a major challenge in ecology. Due to the trade-off between spatial grain and extent, studies tend to focus on a single spatial scale, and the effects of multiple environmental variables operating across spatial scales on the pattern of local species richness have rarely been investigated. 2. Here, we related variation in local species richness of ground beetles, landbirds, and small mammals to variation in vegetation structure and topography, regional climate, biome diversity, and glaciation history for 27 sites across the USA at two different spatial grains. 3. We studied the relative influence of broad-scale (landscape) environmental conditions using variables estimated at the site level (climate, productivity, biome diversity, and glacial era ice cover) and fine-scale (local) environmental conditions using variables estimated at the plot level (topography and vegetation structure) to explain local species richness. We also examined whether plot-level factors scale up to drive continental scale richness patterns. We used Bayesian hierarchical models and quantified the amount of variance in observed richness that was explained by environmental factors at different spatial scales. 4. For all three animal groups, our models explained much of the variation in local species richness (85-89%), but site-level variables explained a greater proportion of richness variance than plot-level variables. Temperature was the most important site-level predictor for explaining variance in landbirds and ground beetles richness. Some aspects of vegetation structure were the main plot-level predictors of landbird richness. Environmental predictors generally had poor explanatory power for small mammal richness, while glacial era ice cover was the most important site-level predictor. 5. Relationships between plot-level factors and richness varied greatly among geographical regions and spatial grains, and most relationships did not hold when predictors were scaled up to continental scale. Our results suggest that the factors that determine richness may be highly dependent on spatial grain, geography, and animal group. We demonstrate that instead of artificially manipulating the resolution to study multi-scale effects, a hierarchical approach that uses fine grain data at broad extents could help solve the issue of scale selection in environment-richness studies.

Animal tracking moves community ecology: Opportunities and challenges

1. Individual decisions regarding how, why, and when organisms interact with one another and with their environment scale up to shape patterns and processes in communities. Recent evidence has firmly established the prevalence of intraspecific variation in nature and its relevance in community ecology, yet challenges associated with collecting data on large numbers of individual conspecifics and heterospecifics has hampered integration of individual variation into community ecology. 2. Nevertheless, recent technological and statistical advances in GPS-tracking, remote sensing, and behavioral ecology offer a toolbox for integrating intraspecific variation into community processes. More than simply describing where organisms go, movement data provide unique information about interactions and environmental associations from which a true individual-to-community framework can be built. 3. By linking the movement paths of both conspecifics and heterospecifics with environmental data, ecologists can now simultaneously quantify intra- and interspecific variation regarding the Eltonian (biotic interactions) and Grinnellian (environmental conditions) factors underpinning community assemblage and dynamics, yet substantial logistical and analytical challenges must be addressed for these approaches to realize their full potential. 4. Across communities, empirical integration of Eltonian and Grinnellian factors can support conservation applications and reveal metacommunity dynamics via tracking-based dispersal data. As the logistical and analytical challenges associated with multi-species tracking are surmounted, we envision a future where individual movements and their ecological and environmental signatures will bring resolution to many enduring issues in community ecology.

Mapping Plant Diversity Based on Combined SENTINEL-1/2 Data—Opportunities for Subtropical Mountainous Forests

Plant diversity is an important parameter in maintaining forest ecosystem services, functions and stability. Timely and accurate monitoring and evaluation of large-area wall-to-wall maps on plant diversity and its spatial heterogeneity are crucial for the conservation and management of forest resources. However, traditional botanical field surveys designed to estimate plant diversity are usually limited in their spatiotemporal resolutions. Using Sentinel-1 (S-1) and Sentinel-2 (S-2) data at high spatiotemporal scales, combined with and referenced to botanical field surveys, may be the best choice to provide accurate plant diversity distribution information over a large area. In this paper, we predicted and mapped plant diversity in a subtropical forest using 24 months of freely and openly available S-1 and S-2 images (10 m × 10 m) data over a large study area (15,290 km2). A total of 448 quadrats (10 m × 10 m) of forestry field surveys were captured in a subtropical evergreen-deciduous broad-leaved mixed forest to validate a machine learning algorithm. The objective was to link the fine Sentinel spectral and radar data to several ground-truthing plant diversity indices in the forests. The results showed that: (1) The Simpson and Shannon-Wiener diversity indices were the best predicted indices using random forest regression, with ȓ2 of around 0.65; (2) The use of S-1 radar data can enhance the accuracy of the predicted heterogeneity indices in the forests by approximately 0.2; (3) As for the mapping of Simpson and Shannon-Wiener, the overall accuracy was 67.4% and 64.2% respectively, while the texture diversity’s overall accuracy was merely 56.8%; (4) From the evaluation and prediction map information, the Simpson, Shannon-Wiener and texture diversity values (and its confidence interval values) indicate spatial heterogeneity in pixel level. The large-area forest plant diversity indices maps add spatially explicit information to the ground-truthing data. Based on the results, we conclude that using the time-series of S-1 and S-2 radar and spectral characteristics, when coupled with limited ground-truthing data, can provide reasonable assessments of plant spatial heterogeneity and diversity across wide areas. It could also help promote forest ecosystem and resource conservation activities in the forestry sector.

Three-dimensional stratification pattern in an old-growth lowland forest: How does height in canopy and season influence temperate bat activity?

The study of animal-habitat interactions is of primary importance for the formulation of conservation recommendations. Flying, gliding, and climbing animals have the ability to exploit their habitat in a three-dimensional way, and the vertical canopy structure in forests plays an essential role for habitat suitability. Forest bats as flying mammals may seasonally shift their microhabitat use due to differing energy demands or changing prey availability, but the patterns are not well understood. We investigated three-dimensional and seasonal habitat use by insectivorous bats in a temperate lowland old-growth forest, the Belovezhskaya Pushcha in Belarus. We acoustically sampled broadleaved and mixed coniferous plots in the forest interior and in gaps in three heights during two reproductive periods (pregnancy/lactation vs. postlactation). In canopy gaps, vertical stratification in bat activity was less pronounced than in the forest interior. Vertical activity patterns differed among species. The upper canopy levels were important foraging habitats for the open-space forager guild and for some edge-space foragers like the Barbastelle bat Barbastella barbastellus and the soprano pipistrelle Pipistrellus pygmaeus. Myotis species had highest activity levels near the ground in forest gaps. Moreover, we found species-dependent seasonal microhabitat shifts. Generally, all species and species groups considered except Myotis species showed higher activity levels during postlactation. Myotis species tended toward higher activity in the forest interior during postlactation. P. pygmaeus switched from high activity levels in the upper canopy during pregnancy and lactation to high activity levels near the ground during postlactation. We conclude that a full comprehension of forest bat habitat use is only possible when height in canopy and seasonal patterns are considered.

Disentangling LiDAR Contribution in Modelling Species–Habitat Structure Relationships in Terrestrial Ecosystems Worldwide. A Systematic Review and Future Directions

Global biodiversity is threatened by unprecedented and increasing anthropogenic pressures, including habitat loss and fragmentation. LiDAR can become a decisive technology by providing accurate information about the linkages between biodiversity and ecosystem structure. Here, we review the current use of LiDAR metrics in ecological studies regarding birds, mammals, reptiles, amphibians, invertebrates, bryophytes, lichens, and fungi (BLF). We quantify the types of research (ecosystem and LiDAR sources) and describe the LiDAR platforms and data that are currently available. We also categorize and harmonize LiDAR metrics into five LiDAR morphological traits (canopy cover, height and vertical distribution, understory and shrubland, and topographic traits) and quantify their current use and effectiveness across taxonomic groups and ecosystems. The literature review returned 173 papers that met our criteria. Europe and North America held most of the studies, and birds were the most studied group, whereas temperate forest was by far the most represented ecosystem. Globally, canopy height was the most used LiDAR trait, especially in forest ecosystems, whereas canopy cover and terrain topography traits performed better in those ecosystems where they were mapped. Understory structure and shrubland traits together with terrain topography showed high effectiveness for less studied groups such as BLF and invertebrates and in open landscapes. Our results show how LiDAR technology has greatly contributed to habitat mapping, including organisms poorly studied until recently, such as BLF. Finally, we discuss the forthcoming opportunities for biodiversity mapping with different LiDAR platforms in combination with spectral information. We advocate (i) for the integration of spaceborne LiDAR data with the already available airborne (airplane, drones) and terrestrial technology, and (ii) the coupling of it with multispectral/hyperspectral information, which will allow for the exploration and analyses of new species and ecosystems.

Estimating Terrain Slope from ICESat-2 Data in Forest Environments

The global digital elevation measurement (DEM) products such as SRTM DEM and GDEM have been widely used for terrain slope retrieval in forests. However, the slope estimation accuracy is generally limited due to the DEMs’ low vertical accuracy over complex forest environments. The Ice, Cloud, and land Elevation Satellite-2 (ICESat-2) mission shows excellent potential for slope estimation because of the high elevation accuracy and unique design of beam pairs. This study aimed to explore the possibility of ICESat-2 data for terrain slope retrieval in the United States forests. First, raw ICESat-2 data were processed to obtain accurate ground surfaces. Second, two different methods based on beam pairs were proposed to derive terrain slopes from the ground surfaces. Third, the estimated slopes were validated by airborne LiDAR-derived slopes and compared with SRTM-derived slopes and GDEM-derived slopes. Finally, we further explored the influence of surface topography and ground elevation error on slope estimation from ICESat-2 data. The results show that the ground surface can be accurately extracted from all scenarios of ICESat-2 data, even weak beams in the daytime, which provides the basis for terrain slope retrieval from ICESat-2 beam pairs. The estimated slope has a strong correlation with airborne LiDAR-derived slopes regardless of slope estimation methods, which demonstrates that the ICESat-2 data are appropriate for terrain slope estimation in complex forest environments. Compared with the method based on along- and across-track analysis (method 1), the method based on plane fitting of beam pairs (method 2) has a high estimation accuracy of terrain slopes, which indicates that method 2 is more suitable for slope estimation because it takes full advantage of more ground surface information. Additionally, the results also indicate that ICESat-2 performs much better than SRTM DEMs and GDEMs in estimating terrain slopes. Both ground elevation error and surface topography have a significant impact on terrain slope retrieval from ICESat-2 data, and ground surface extraction should be improved to ensure the accuracy of terrain slope retrieval over extremely complex environments. This study demonstrates for the first time that ICESat-2 has a strong capability in terrain slope retrieval. Additionally, this paper also provides effective solutions to accurately estimate terrain slopes from ICESat-2 data. The ICESat-2 slopes have many potential applications, including the generation of global slope products, the improvement of terrain slopes derived from the existing global DEM products, and the correction of vegetation biophysical parameters retrieved from space-borne LiDAR waveform data.