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For: Ghelis T. Signal processing by protein tyrosine phosphorylation in plants. Plant Signal Behav 2011;6:942-51. [PMID: 21628997 PMCID: PMC3257767 DOI: 10.4161/psb.6.7.15261] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/22/2011] [Accepted: 02/22/2011] [Indexed: 05/05/2023]
Number Cited by Other Article(s)
1
Choi JH, Oh MH. Role of Tyrosine Phosphorylation in PEP1 Receptor 1(PEPR1) in Arabidopsis thaliana. PLANTS (BASEL, SWITZERLAND) 2025;14:1515. [PMID: 40431080 PMCID: PMC12115080 DOI: 10.3390/plants14101515] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/21/2025] [Revised: 05/09/2025] [Accepted: 05/13/2025] [Indexed: 05/29/2025]
2
Zhang H, Yang Q, Wang L, Liu H, Zhang D, Duan CG, Li X. Moss-pathogen interactions: a review of the current status and future opportunities. Front Genet 2025;16:1539311. [PMID: 40008229 PMCID: PMC11850516 DOI: 10.3389/fgene.2025.1539311] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/04/2024] [Accepted: 01/21/2025] [Indexed: 02/27/2025]  Open
3
Tavakolian S, Eshkiki ZS, Akbari A, Faghihloo E, Tabaeian SP. PTEN regulation in virus-associated cancers. Pathol Res Pract 2025;266:155749. [PMID: 39642806 DOI: 10.1016/j.prp.2024.155749] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Revised: 11/10/2024] [Accepted: 11/29/2024] [Indexed: 12/09/2024]
4
Xin J, Li C, Liu X, Shi X, Sun Y, Shang JX. Emerging Functions of Protein Tyrosine Phosphatases in Plants. Int J Mol Sci 2024;25:12050. [PMID: 39596119 PMCID: PMC11593807 DOI: 10.3390/ijms252212050] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Revised: 10/31/2024] [Accepted: 11/07/2024] [Indexed: 11/28/2024]  Open
5
Poretsky E, Andorf CM, Sen TZ. PhosBoost: Improved phosphorylation prediction recall using gradient boosting and protein language models. PLANT DIRECT 2023;7:e554. [PMID: 38124705 PMCID: PMC10732782 DOI: 10.1002/pld3.554] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Revised: 11/20/2023] [Accepted: 11/26/2023] [Indexed: 12/23/2023]
6
Ventimiglia M, Marturano G, Vangelisti A, Usai G, Simoni S, Cavallini A, Giordani T, Natali L, Zuccolo A, Mascagni F. Genome-wide identification and characterization of exapted transposable elements in the large genome of sunflower (Helianthus annuus L.). THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023;113:734-748. [PMID: 36573648 DOI: 10.1111/tpj.16078] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/10/2022] [Revised: 12/07/2022] [Accepted: 12/21/2022] [Indexed: 06/17/2023]
7
Zhang G, Yan Y, Zeng X, Wang Y, Zhang Y. Quantitative Proteomics Analysis Reveals Proteins Associated with High Melatonin Content in Barley Seeds under NaCl-Induced Salt Stress. JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY 2022;70:8492-8510. [PMID: 35759742 DOI: 10.1021/acs.jafc.2c00466] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
8
Wu L, Meng X, Huang H, Liu Y, Jiang W, Su X, Wang Z, Meng F, Wang L, Peng D, Xing S. Comparative Proteome and Phosphoproteome Analyses Reveal Different Molecular Mechanism Between Stone Planting Under the Forest and Greenhouse Planting of Dendrobium huoshanense. FRONTIERS IN PLANT SCIENCE 2022;13:937392. [PMID: 35873990 PMCID: PMC9301318 DOI: 10.3389/fpls.2022.937392] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/06/2022] [Accepted: 06/20/2022] [Indexed: 06/15/2023]
9
Song W, Hu L, Ma Z, Yang L, Li J. Importance of Tyrosine Phosphorylation in Hormone-Regulated Plant Growth and Development. Int J Mol Sci 2022;23:ijms23126603. [PMID: 35743047 PMCID: PMC9224382 DOI: 10.3390/ijms23126603] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Revised: 06/07/2022] [Accepted: 06/11/2022] [Indexed: 02/01/2023]  Open
10
Khalili E, Ramazi S, Ghanati F, Kouchaki S. Predicting protein phosphorylation sites in soybean using interpretable deep tabular learning network. Brief Bioinform 2022;23:bbac015. [PMID: 35152280 DOI: 10.1093/bib/bbac015] [Citation(s) in RCA: 14] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/28/2021] [Revised: 12/17/2021] [Accepted: 01/12/2022] [Indexed: 12/17/2023]  Open
11
Faraji S, Heidari P, Amouei H, Filiz E, Abdullah, Poczai P. Investigation and Computational Analysis of the Sulfotransferase (SOT) Gene Family in Potato (Solanum tuberosum): Insights into Sulfur Adjustment for Proper Development and Stimuli Responses. PLANTS (BASEL, SWITZERLAND) 2021;10:2597. [PMID: 34961068 PMCID: PMC8707064 DOI: 10.3390/plants10122597] [Citation(s) in RCA: 26] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2021] [Revised: 11/22/2021] [Accepted: 11/24/2021] [Indexed: 07/20/2023]
12
Abulfaraj AA, Hirt H, Rayapuram N. G3BPs in Plant Stress. FRONTIERS IN PLANT SCIENCE 2021;12:680710. [PMID: 34177995 PMCID: PMC8222905 DOI: 10.3389/fpls.2021.680710] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/15/2021] [Accepted: 05/14/2021] [Indexed: 05/24/2023]
13
Avalbaev A, Yuldashev R, Fedorova K, Petrova N, Fedina E, Gilmanova R, Karimova F, Shakirova F. 24-epibrassinolide-induced growth promotion of wheat seedlings is associated with changes in the proteome and tyrosine phosphoproteome. PLANT BIOLOGY (STUTTGART, GERMANY) 2021;23:456-463. [PMID: 33369832 DOI: 10.1111/plb.13233] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/24/2020] [Accepted: 12/14/2020] [Indexed: 06/12/2023]
14
Bheri M, Mahiwal S, Sanyal SK, Pandey GK. Plant protein phosphatases: What do we know about their mechanism of action? FEBS J 2020;288:756-785. [PMID: 32542989 DOI: 10.1111/febs.15454] [Citation(s) in RCA: 41] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2020] [Revised: 05/27/2020] [Accepted: 06/09/2020] [Indexed: 12/30/2022]
15
Characterization of Atypical Protein Tyrosine Kinase (PTK) Genes and Their Role in Abiotic Stress Response in Rice. PLANTS 2020;9:plants9050664. [PMID: 32456239 PMCID: PMC7284356 DOI: 10.3390/plants9050664] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/04/2020] [Revised: 05/14/2020] [Accepted: 05/14/2020] [Indexed: 02/02/2023]
16
Ahsan N, Wilson RS, Rao RSP, Salvato F, Sabila M, Ullah H, Miernyk JA. Mass Spectrometry-Based Identification of Phospho-Tyr in Plant Proteomics. J Proteome Res 2020;19:561-571. [PMID: 31967836 DOI: 10.1021/acs.jproteome.9b00550] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
17
A key gene bHLH115 in iron homeostasis: comprehensive bioinformatics analyses in Arabidopsis, tomato, rice, and maize. Biometals 2019;32:641-656. [DOI: 10.1007/s10534-019-00199-z] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/13/2019] [Accepted: 04/30/2019] [Indexed: 10/26/2022]
18
Sugano S, Maeda S, Hayashi N, Kajiwara H, Inoue H, Jiang CJ, Takatsuji H, Mori M. Tyrosine phosphorylation of a receptor-like cytoplasmic kinase, BSR1, plays a crucial role in resistance to multiple pathogens in rice. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2018;96:1137-1147. [PMID: 30222251 DOI: 10.1111/tpj.14093] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/16/2018] [Revised: 08/29/2018] [Accepted: 09/06/2018] [Indexed: 06/08/2023]
19
Tong K, Wang Y, Su Z. Phosphotyrosine signalling and the origin of animal multicellularity. Proc Biol Sci 2018;284:rspb.2017.0681. [PMID: 28768887 DOI: 10.1098/rspb.2017.0681] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Accepted: 06/26/2017] [Indexed: 12/21/2022]  Open
20
Kost MA, Perales HR, Wijeratne S, Wijeratne AJ, Stockinger E, Mercer KL. Differentiated transcriptional signatures in the maize landraces of Chiapas, Mexico. BMC Genomics 2017;18:707. [PMID: 28886704 PMCID: PMC5591509 DOI: 10.1186/s12864-017-4005-y] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/29/2016] [Accepted: 08/02/2017] [Indexed: 12/22/2022]  Open
21
Evolutionary expansion and structural functionalism of the ancient family of profilin proteins. Gene 2017;626:70-86. [PMID: 28501628 DOI: 10.1016/j.gene.2017.05.024] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2016] [Revised: 05/02/2017] [Accepted: 05/09/2017] [Indexed: 02/07/2023]
22
Tyrosine phosphorylation and protein degradation control the transcriptional activity of WRKY involved in benzylisoquinoline alkaloid biosynthesis. Sci Rep 2016;6:31988. [PMID: 27552928 PMCID: PMC4995487 DOI: 10.1038/srep31988] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/30/2016] [Accepted: 08/01/2016] [Indexed: 11/12/2022]  Open
23
Plattner H. Signalling in ciliates: long- and short-range signals and molecular determinants for cellular dynamics. Biol Rev Camb Philos Soc 2015;92:60-107. [PMID: 26487631 DOI: 10.1111/brv.12218] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2015] [Revised: 07/28/2015] [Accepted: 08/21/2015] [Indexed: 12/30/2022]
24
Shankar A, Agrawal N, Sharma M, Pandey A, Pandey GK. Role of Protein Tyrosine Phosphatases in Plants. Curr Genomics 2015;16:224-36. [PMID: 26962298 PMCID: PMC4765517 DOI: 10.2174/1389202916666150424234300] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Revised: 04/19/2015] [Accepted: 04/24/2015] [Indexed: 01/01/2023]  Open
25
Aryal UK, Ross ARS, Krochko JE. Enrichment and Analysis of Intact Phosphoproteins in Arabidopsis Seedlings. PLoS One 2015;10:e0130763. [PMID: 26158488 PMCID: PMC4497735 DOI: 10.1371/journal.pone.0130763] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2015] [Accepted: 05/23/2015] [Indexed: 12/19/2022]  Open
26
Nemoto K, Takemori N, Seki M, Shinozaki K, Sawasaki T. Members of the Plant CRK Superfamily Are Capable of Trans- and Autophosphorylation of Tyrosine Residues. J Biol Chem 2015;290:16665-77. [PMID: 25969537 DOI: 10.1074/jbc.m114.617274] [Citation(s) in RCA: 36] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2014] [Indexed: 11/06/2022]  Open
27
Walton A, Stes E, De Smet I, Goormachtig S, Gevaert K. Plant hormone signalling through the eye of the mass spectrometer. Proteomics 2015;15:1113-26. [DOI: 10.1002/pmic.201400403] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2014] [Revised: 10/01/2014] [Accepted: 11/13/2014] [Indexed: 12/23/2022]
28
Chen JG. Phosphorylation of RACK1 in plants. PLANT SIGNALING & BEHAVIOR 2015;10:e1022013. [PMID: 26322575 PMCID: PMC4622689 DOI: 10.1080/15592324.2015.1022013] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/12/2015] [Accepted: 02/17/2015] [Indexed: 06/04/2023]
29
Hindle MM, Martin SF, Noordally ZB, van Ooijen G, Barrios-Llerena ME, Simpson TI, Le Bihan T, Millar AJ. The reduced kinome of Ostreococcus tauri: core eukaryotic signalling components in a tractable model species. BMC Genomics 2014;15:640. [PMID: 25085202 PMCID: PMC4143559 DOI: 10.1186/1471-2164-15-640] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/24/2014] [Accepted: 07/08/2014] [Indexed: 02/07/2023]  Open
30
van Wijk KJ, Friso G, Walther D, Schulze WX. Meta-Analysis of Arabidopsis thaliana Phospho-Proteomics Data Reveals Compartmentalization of Phosphorylation Motifs. THE PLANT CELL 2014;26:2367-2389. [PMID: 24894044 PMCID: PMC4114939 DOI: 10.1105/tpc.114.125815] [Citation(s) in RCA: 141] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2014] [Revised: 03/27/2014] [Accepted: 05/09/2014] [Indexed: 05/18/2023]
31
Klecker M, Gasch P, Peisker H, Dörmann P, Schlicke H, Grimm B, Mustroph A. A Shoot-Specific Hypoxic Response of Arabidopsis Sheds Light on the Role of the Phosphate-Responsive Transcription Factor PHOSPHATE STARVATION RESPONSE1. PLANT PHYSIOLOGY 2014;165:774-790. [PMID: 24753539 PMCID: PMC4044847 DOI: 10.1104/pp.114.237990] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/17/2014] [Accepted: 04/17/2014] [Indexed: 05/05/2023]
32
Lv DW, Li X, Zhang M, Gu AQ, Zhen SM, Wang C, Li XH, Yan YM. Large-scale phosphoproteome analysis in seedling leaves of Brachypodium distachyon L. BMC Genomics 2014;15:375. [PMID: 24885693 PMCID: PMC4079959 DOI: 10.1186/1471-2164-15-375] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2014] [Accepted: 05/06/2014] [Indexed: 01/03/2023]  Open
33
Parrotta L, Cresti M, Cai G. Accumulation and post-translational modifications of plant tubulins. PLANT BIOLOGY (STUTTGART, GERMANY) 2014;16:521-7. [PMID: 24112714 DOI: 10.1111/plb.12104] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/21/2013] [Accepted: 08/08/2013] [Indexed: 05/03/2023]
34
Xue Y, Warburton ML, Sawkins M, Zhang X, Setter T, Xu Y, Grudloyma P, Gethi J, Ribaut JM, Li W, Zhang X, Zheng Y, Yan J. Genome-wide association analysis for nine agronomic traits in maize under well-watered and water-stressed conditions. TAG. THEORETICAL AND APPLIED GENETICS. THEORETISCHE UND ANGEWANDTE GENETIK 2013;126:2587-96. [PMID: 23884600 DOI: 10.1007/s00122-013-2158-x] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2013] [Accepted: 07/12/2013] [Indexed: 05/03/2023]
35
Liu DR, Huang WX, Cai XL. Oligomerization of rice granule-bound starch synthase 1 modulates its activity regulation. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2013;210:141-50. [PMID: 23849121 DOI: 10.1016/j.plantsci.2013.05.019] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/20/2013] [Revised: 05/16/2013] [Accepted: 05/17/2013] [Indexed: 05/23/2023]
36
Park CJ, Caddell DF, Ronald PC. Protein phosphorylation in plant immunity: insights into the regulation of pattern recognition receptor-mediated signaling. FRONTIERS IN PLANT SCIENCE 2012;3:177. [PMID: 22876255 PMCID: PMC3411088 DOI: 10.3389/fpls.2012.00177] [Citation(s) in RCA: 52] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/08/2012] [Accepted: 07/18/2012] [Indexed: 05/03/2023]
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