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For: Paaby AB, White AG, Riccardi DD, Gunsalus KC, Piano F, Rockman MV. Wild worm embryogenesis harbors ubiquitous polygenic modifier variation. eLife 2015;4. [PMID: 26297805 PMCID: PMC4569889 DOI: 10.7554/elife.09178] [Citation(s) in RCA: 52] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/03/2015] [Accepted: 08/21/2015] [Indexed: 12/28/2022]  Open
Number Cited by Other Article(s)
1
Gąsienica P, Toch K, Zając-Garlacz KS, Labocha-Derkowska M. Genetic Background and Gene Essentiality. Genes (Basel) 2025;16:570. [PMID: 40428392 PMCID: PMC12111165 DOI: 10.3390/genes16050570] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2025] [Revised: 05/01/2025] [Accepted: 05/07/2025] [Indexed: 05/29/2025]  Open
2
Zdraljevic S, Walter-McNeill L, Lee A, Bloom J, Kruglyak L. Faster genetic mapping of complex traits in C. elegans. MICROPUBLICATION BIOLOGY 2025;2025:10.17912/micropub.biology.001544. [PMID: 40342920 PMCID: PMC12059802 DOI: 10.17912/micropub.biology.001544] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 02/13/2025] [Revised: 03/11/2025] [Accepted: 04/17/2025] [Indexed: 05/11/2025]
3
Zhang G, Félix MA, Andersen EC. Transposon-mediated genic rearrangements underlie variation in small RNA pathways. SCIENCE ADVANCES 2024;10:eado9461. [PMID: 39303031 DOI: 10.1126/sciadv.ado9461] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2024] [Accepted: 08/13/2024] [Indexed: 09/22/2024]
4
Schmidlin K, Apodaca S, Newell D, Sastokas A, Kinsler G, Geiler-Samerotte K. Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs. eLife 2024;13:RP94144. [PMID: 39255191 PMCID: PMC11386965 DOI: 10.7554/elife.94144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/12/2024]  Open
5
Schmidlin, Apodaca, Newell, Sastokas, Kinsler, Geiler-Samerotte. Distinguishing mutants that resist drugs via different mechanisms by examining fitness tradeoffs. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.10.17.562616. [PMID: 37905147 PMCID: PMC10614906 DOI: 10.1101/2023.10.17.562616] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/02/2023]
6
Hale JJ, Matsui T, Goldstein I, Mullis MN, Roy KR, Ville CN, Miller D, Wang C, Reynolds T, Steinmetz LM, Levy SF, Ehrenreich IM. Genome-scale analysis of interactions between genetic perturbations and natural variation. Nat Commun 2024;15:4234. [PMID: 38762544 PMCID: PMC11102447 DOI: 10.1038/s41467-024-48626-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Accepted: 04/30/2024] [Indexed: 05/20/2024]  Open
7
Hale JJ, Matsui T, Goldstein I, Mullis MN, Roy KR, Ville CN, Miller D, Wang C, Reynolds T, Steinmetz LM, Levy SF, Ehrenreich IM. Genome-scale analysis of interactions between genetic perturbations and natural variation. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.05.06.539663. [PMID: 38293072 PMCID: PMC10827069 DOI: 10.1101/2023.05.06.539663] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/01/2024]
8
Chou HT, Valencia F, Alexander JC, Bell AD, Deb D, Pollard DA, Paaby AB. Diversification of small RNA pathways underlies germline RNA interference incompetence in wild Caenorhabditis elegans strains. Genetics 2024;226:iyad191. [PMID: 37865119 PMCID: PMC10763538 DOI: 10.1093/genetics/iyad191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2023] [Revised: 07/09/2023] [Accepted: 08/12/2023] [Indexed: 10/23/2023]  Open
9
Tsouris A, Fournier T, Friedrich A, Hou J, Dunham MJ, Schacherer J. Species-wide survey of the expressivity and complexity spectrum of traits in yeast. PLoS Genet 2024;20:e1011119. [PMID: 38236897 PMCID: PMC10826966 DOI: 10.1371/journal.pgen.1011119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Revised: 01/30/2024] [Accepted: 01/02/2024] [Indexed: 01/31/2024]  Open
10
Frézal L, Saglio M, Zhang G, Noble L, Richaud A, Félix MA. Genome-wide association and environmental suppression of the mortal germline phenotype of wild C. elegans. EMBO Rep 2023;24:e58116. [PMID: 37983674 PMCID: PMC10702804 DOI: 10.15252/embr.202358116] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2023] [Revised: 10/19/2023] [Accepted: 10/27/2023] [Indexed: 11/22/2023]  Open
11
Bell AD, Chou HT, Valencia F, Paaby AB. Beyond the reference: gene expression variation and transcriptional response to RNA interference in Caenorhabditis elegans. G3 (BETHESDA, MD.) 2023;13:jkad112. [PMID: 37221008 PMCID: PMC10411595 DOI: 10.1093/g3journal/jkad112] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Revised: 05/11/2023] [Accepted: 05/15/2023] [Indexed: 05/25/2023]
12
Sun YH, Wu YL, Liao BY. Phenotypic heterogeneity in human genetic diseases: ultrasensitivity-mediated threshold effects as a unifying molecular mechanism. J Biomed Sci 2023;30:58. [PMID: 37525275 PMCID: PMC10388531 DOI: 10.1186/s12929-023-00959-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/01/2023] [Accepted: 07/26/2023] [Indexed: 08/02/2023]  Open
13
Fausett SR, Sandjak A, Billard B, Braendle C. Higher-order epistasis shapes natural variation in germ stem cell niche activity. Nat Commun 2023;14:2824. [PMID: 37198172 DOI: 10.1038/s41467-023-38527-0] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/12/2022] [Accepted: 05/05/2023] [Indexed: 05/19/2023]  Open
14
Bell AD, Chou HT, Paaby AB. Beyond the reference: gene expression variation and transcriptional response to RNAi in C. elegans. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.03.24.533964. [PMID: 36993640 PMCID: PMC10055391 DOI: 10.1101/2023.03.24.533964] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
15
Loss-of-function mutation survey revealed that genes with background-dependent fitness are rare and functionally related in yeast. Proc Natl Acad Sci U S A 2022;119:e2204206119. [PMID: 36067306 PMCID: PMC9478683 DOI: 10.1073/pnas.2204206119] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]  Open
16
Kaul S, Chou HT, Charles S, Aubry G, Lu H, Paaby AB. Single-molecule FISH in C. elegans embryos reveals early embryonic expression dynamics of par-2 , lgl-1 and chin-1 and possible differences between hyper-diverged strains. MICROPUBLICATION BIOLOGY 2022;2022:10.17912/micropub.biology.000609. [PMID: 35903776 PMCID: PMC9315406 DOI: 10.17912/micropub.biology.000609] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Grants] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 06/05/2022] [Revised: 07/03/2022] [Accepted: 07/19/2022] [Indexed: 11/04/2022]
17
Sun S, Roth C, Floyd Averette A, Magwene PM, Heitman J. Epistatic genetic interactions govern morphogenesis during sexual reproduction and infection in a global human fungal pathogen. Proc Natl Acad Sci U S A 2022;119:e2122293119. [PMID: 35169080 PMCID: PMC8872808 DOI: 10.1073/pnas.2122293119] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 01/11/2022] [Indexed: 12/12/2022]  Open
18
Schell R, Hale JJ, Mullis MN, Matsui T, Foree R, Ehrenreich IM. Genetic basis of a spontaneous mutation’s expressivity. Genetics 2022;220:6515283. [PMID: 35078232 PMCID: PMC8893249 DOI: 10.1093/genetics/iyac013] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/08/2021] [Accepted: 01/19/2022] [Indexed: 11/12/2022]  Open
19
Andersen EC, Rockman MV. Natural genetic variation as a tool for discovery in Caenorhabditis nematodes. Genetics 2022;220:iyab156. [PMID: 35134197 PMCID: PMC8733454 DOI: 10.1093/genetics/iyab156] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/20/2021] [Accepted: 09/11/2021] [Indexed: 11/12/2022]  Open
20
Koneru SL, Hintze M, Katsanos D, Barkoulas M. Cryptic genetic variation in a heat shock protein modifies the outcome of a mutation affecting epidermal stem cell development in C. elegans. Nat Commun 2021;12:3263. [PMID: 34059684 PMCID: PMC8166903 DOI: 10.1038/s41467-021-23567-1] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2020] [Accepted: 04/29/2021] [Indexed: 12/13/2022]  Open
21
Goldstein I, Ehrenreich IM. The complex role of genetic background in shaping the effects of spontaneous and induced mutations. Yeast 2020;38:187-196. [PMID: 33125810 PMCID: PMC7984271 DOI: 10.1002/yea.3530] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/27/2020] [Revised: 10/09/2020] [Accepted: 10/24/2020] [Indexed: 12/27/2022]  Open
22
Kinsler G, Geiler-Samerotte K, Petrov DA. Fitness variation across subtle environmental perturbations reveals local modularity and global pleiotropy of adaptation. eLife 2020;9:e61271. [PMID: 33263280 PMCID: PMC7880691 DOI: 10.7554/elife.61271] [Citation(s) in RCA: 64] [Impact Index Per Article: 12.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2020] [Accepted: 12/02/2020] [Indexed: 02/07/2023]  Open
23
Genetic Variation in Complex Traits in Transgenic α-Synuclein Strains of Caenorhabditis elegans. Genes (Basel) 2020;11:genes11070778. [PMID: 32664512 PMCID: PMC7397059 DOI: 10.3390/genes11070778] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/22/2020] [Revised: 07/07/2020] [Accepted: 07/08/2020] [Indexed: 11/16/2022]  Open
24
Candida albicans Genetic Background Influences Mean and Heterogeneity of Drug Responses and Genome Stability during Evolution in Fluconazole. mSphere 2020;5:5/3/e00480-20. [PMID: 32581072 PMCID: PMC7316494 DOI: 10.1128/msphere.00480-20] [Citation(s) in RCA: 29] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/09/2023]  Open
25
Pesevski M, Dworkin I. Genetic and environmental canalization are not associated among altitudinally varying populations of Drosophila melanogaster. Evolution 2020;74:1755-1771. [PMID: 32562566 DOI: 10.1111/evo.14039] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2019] [Revised: 05/19/2020] [Accepted: 05/30/2020] [Indexed: 01/23/2023]
26
Natural cryptic variation in epigenetic modulation of an embryonic gene regulatory network. Proc Natl Acad Sci U S A 2020;117:13637-13646. [PMID: 32482879 DOI: 10.1073/pnas.1920343117] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]  Open
27
Hintze M, Koneru SL, Gilbert SPR, Katsanos D, Lambert J, Barkoulas M. A Cell Fate Switch in the Caenorhabditis elegans Seam Cell Lineage Occurs Through Modulation of the Wnt Asymmetry Pathway in Response to Temperature Increase. Genetics 2020;214:927-939. [PMID: 31988193 PMCID: PMC7153939 DOI: 10.1534/genetics.119.302896] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/18/2019] [Accepted: 01/24/2020] [Indexed: 12/20/2022]  Open
28
Ewe CK, Torres Cleuren YN, Rothman JH. Evolution and Developmental System Drift in the Endoderm Gene Regulatory Network of Caenorhabditis and Other Nematodes. Front Cell Dev Biol 2020;8:170. [PMID: 32258041 PMCID: PMC7093329 DOI: 10.3389/fcell.2020.00170] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2020] [Accepted: 03/02/2020] [Indexed: 01/17/2023]  Open
29
Irvine SQ. Embryonic canalization and its limits-A view from temperature. JOURNAL OF EXPERIMENTAL ZOOLOGY PART B-MOLECULAR AND DEVELOPMENTAL EVOLUTION 2020;334:128-144. [PMID: 32011096 DOI: 10.1002/jez.b.22930] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 01/17/2020] [Accepted: 01/21/2020] [Indexed: 02/06/2023]
30
Snoek BL, Sterken MG, Hartanto M, van Zuilichem AJ, Kammenga JE, de Ridder D, Nijveen H. WormQTL2: an interactive platform for systems genetics in Caenorhabditis elegans. Database (Oxford) 2020;2020:baz149. [PMID: 31960906 PMCID: PMC6971878 DOI: 10.1093/database/baz149] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2019] [Revised: 11/30/2019] [Accepted: 12/13/2019] [Indexed: 12/19/2022]
31
Vertical transmission in Caenorhabditis nematodes of RNA molecules encoding a viral RNA-dependent RNA polymerase. Proc Natl Acad Sci U S A 2019;116:24738-24747. [PMID: 31740606 PMCID: PMC6900638 DOI: 10.1073/pnas.1903903116] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]  Open
32
Eguchi Y, Bilolikar G, Geiler-Samerotte K. Why and how to study genetic changes with context-dependent effects. Curr Opin Genet Dev 2019;58-59:95-102. [PMID: 31593884 DOI: 10.1016/j.gde.2019.08.003] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2019] [Revised: 08/21/2019] [Accepted: 08/29/2019] [Indexed: 01/18/2023]
33
Bernstein MR, Zdraljevic S, Andersen EC, Rockman MV. Tightly linked antagonistic-effect loci underlie polygenic phenotypic variation in C. elegans. Evol Lett 2019;3:462-473. [PMID: 31636939 PMCID: PMC6791183 DOI: 10.1002/evl3.139] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2018] [Accepted: 08/23/2019] [Indexed: 12/31/2022]  Open
34
Torres Cleuren YN, Ewe CK, Chipman KC, Mears ER, Wood CG, Al-Alami CEA, Alcorn MR, Turner TL, Joshi PM, Snell RG, Rothman JH. Extensive intraspecies cryptic variation in an ancient embryonic gene regulatory network. eLife 2019;8:48220. [PMID: 31414984 PMCID: PMC6754231 DOI: 10.7554/elife.48220] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/06/2019] [Accepted: 08/15/2019] [Indexed: 12/13/2022]  Open
35
Hughes S, Vrinds I, de Roo J, Francke C, Shimeld SM, Woollard A, Sato A. DnaJ chaperones contribute to canalization. JOURNAL OF EXPERIMENTAL ZOOLOGY. PART A, ECOLOGICAL AND INTEGRATIVE PHYSIOLOGY 2019;331:201-212. [PMID: 30653842 DOI: 10.1002/jez.2254] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2018] [Revised: 12/17/2018] [Accepted: 12/18/2018] [Indexed: 01/04/2023]
36
Complex modifier landscape underlying genetic background effects. Proc Natl Acad Sci U S A 2019;116:5045-5054. [PMID: 30804202 PMCID: PMC6421401 DOI: 10.1073/pnas.1820915116] [Citation(s) in RCA: 32] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/28/2023]  Open
37
Sato A. Chaperones, Canalization, and Evolution of Animal Forms. Int J Mol Sci 2018;19:E3029. [PMID: 30287767 PMCID: PMC6213012 DOI: 10.3390/ijms19103029] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2018] [Revised: 10/02/2018] [Accepted: 10/03/2018] [Indexed: 12/18/2022]  Open
38
Haag ES, Fitch DHA, Delattre M. From "the Worm" to "the Worms" and Back Again: The Evolutionary Developmental Biology of Nematodes. Genetics 2018;210:397-433. [PMID: 30287515 PMCID: PMC6216592 DOI: 10.1534/genetics.118.300243] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2017] [Accepted: 08/03/2018] [Indexed: 12/13/2022]  Open
39
Mullis MN, Matsui T, Schell R, Foree R, Ehrenreich IM. The complex underpinnings of genetic background effects. Nat Commun 2018;9:3548. [PMID: 30224702 PMCID: PMC6141565 DOI: 10.1038/s41467-018-06023-5] [Citation(s) in RCA: 49] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2017] [Accepted: 08/09/2018] [Indexed: 12/01/2022]  Open
40
Genetic Network Complexity Shapes Background-Dependent Phenotypic Expression. Trends Genet 2018;34:578-586. [PMID: 29903533 DOI: 10.1016/j.tig.2018.05.006] [Citation(s) in RCA: 30] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2017] [Revised: 05/09/2018] [Accepted: 05/17/2018] [Indexed: 11/22/2022]
41
Fournier T, Schacherer J. Genetic backgrounds and hidden trait complexity in natural populations. Curr Opin Genet Dev 2017;47:48-53. [PMID: 28915487 PMCID: PMC5716861 DOI: 10.1016/j.gde.2017.08.009] [Citation(s) in RCA: 23] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2017] [Revised: 08/09/2017] [Accepted: 08/31/2017] [Indexed: 11/29/2022]
42
Noble LM, Chelo I, Guzella T, Afonso B, Riccardi DD, Ammerman P, Dayarian A, Carvalho S, Crist A, Pino-Querido A, Shraiman B, Rockman MV, Teotónio H. Polygenicity and Epistasis Underlie Fitness-Proximal Traits in the Caenorhabditis elegans Multiparental Experimental Evolution (CeMEE) Panel. Genetics 2017;207:1663-1685. [PMID: 29066469 PMCID: PMC5714472 DOI: 10.1534/genetics.117.300406] [Citation(s) in RCA: 48] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2017] [Accepted: 10/10/2017] [Indexed: 01/27/2023]  Open
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Chandler CH, Chari S, Kowalski A, Choi L, Tack D, DeNieu M, Pitchers W, Sonnenschein A, Marvin L, Hummel K, Marier C, Victory A, Porter C, Mammel A, Holms J, Sivaratnam G, Dworkin I. How well do you know your mutation? Complex effects of genetic background on expressivity, complementation, and ordering of allelic effects. PLoS Genet 2017;13:e1007075. [PMID: 29166655 PMCID: PMC5718557 DOI: 10.1371/journal.pgen.1007075] [Citation(s) in RCA: 38] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/20/2016] [Revised: 12/06/2017] [Accepted: 10/15/2017] [Indexed: 12/16/2022]  Open
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Ras/MAPK Modifier Loci Revealed by eQTL in Caenorhabditis elegans. G3-GENES GENOMES GENETICS 2017;7:3185-3193. [PMID: 28751501 PMCID: PMC5592943 DOI: 10.1534/g3.117.1120] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/05/2023]
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Ehrenreich IM. Epistasis: Searching for Interacting Genetic Variants Using Crosses. G3 (BETHESDA, MD.) 2017;7:1619-1622. [PMID: 28592644 PMCID: PMC5473743 DOI: 10.1534/g3.117.042770] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
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Ehrenreich IM. Epistasis: Searching for Interacting Genetic Variants Using Crosses. Genetics 2017;206:531-535. [PMID: 28592494 PMCID: PMC5499170 DOI: 10.1534/genetics.117.203059] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]  Open
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Kammenga JE. The background puzzle: how identical mutations in the same gene lead to different disease symptoms. FEBS J 2017;284:3362-3373. [PMID: 28390082 DOI: 10.1111/febs.14080] [Citation(s) in RCA: 56] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2017] [Revised: 03/31/2017] [Accepted: 04/05/2017] [Indexed: 01/05/2023]
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Matsui T, Lee JT, Ehrenreich IM. Genetic suppression: Extending our knowledge from lab experiments to natural populations. Bioessays 2017;39. [PMID: 28471485 DOI: 10.1002/bies.201700023] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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Nam YJ, Herman D, Blomme J, Chae E, Kojima M, Coppens F, Storme V, Van Daele T, Dhondt S, Sakakibara H, Weigel D, Inzé D, Gonzalez N. Natural Variation of Molecular and Morphological Gibberellin Responses. PLANT PHYSIOLOGY 2017;173:703-714. [PMID: 27879393 PMCID: PMC5210761 DOI: 10.1104/pp.16.01626] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/20/2016] [Accepted: 11/18/2016] [Indexed: 05/18/2023]
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Considerations when choosing a genetic model organism for metabolomics studies. Curr Opin Chem Biol 2016;36:7-14. [PMID: 28025166 DOI: 10.1016/j.cbpa.2016.12.005] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2016] [Revised: 12/01/2016] [Accepted: 12/05/2016] [Indexed: 01/16/2023]
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